Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F8 I0 R1
|
311 |
50.1 |
4085234 |
95.9% |
3917739 |
60.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,507,250 |
A→G |
21.9% |
I182T (ATC→ACC) |
ydcO ← |
predicted benzoate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,507,250 | 0 | A | G | 21.9%
| 165.4
/ 45.6
| 82 | I182T (ATC→ACC) | ydcO | predicted benzoate transporter |
| Reads supporting (aligned to +/- strand): ref base A (44/20); new base G (14/4); total (58/24) |
| Fisher's exact test for biased strand distribution p-value = 5.66e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCAGGGGTAATATAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTT > W3110S.gb/1507181‑1507315
|
tCAGGGGTAATATAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGAt < 1:343455/71‑1 (MQ=255)
atatAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGGTGacgatcac < 1:3896686/71‑1 (MQ=255)
atatAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGGTGacgatcac < 1:3646752/71‑1 (MQ=255)
atatAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcac > 1:2539158/1‑71 (MQ=255)
atatAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcac > 1:1278281/1‑71 (MQ=255)
atatAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcac > 1:260303/1‑71 (MQ=255)
atatAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcac > 1:3606781/1‑71 (MQ=255)
tataAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGGTGacg < 1:1118899/65‑1 (MQ=255)
ataAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcacga > 1:160476/1‑71 (MQ=255)
ataAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcacga > 1:3005231/1‑71 (MQ=255)
ataAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcacga > 1:1371220/1‑71 (MQ=255)
taAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGacgatcacgat > 1:2435965/1‑71 (MQ=255)
gagaACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaataa < 1:3511245/71‑1 (MQ=255)
gagaACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaataa < 1:389204/71‑1 (MQ=255)
gagaACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaataa < 1:2370622/71‑1 (MQ=255)
cGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatcatc > 1:1789898/1‑71 (MQ=255)
ttAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCgg > 1:2047840/1‑70 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGc < 1:82978/70‑1 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaataat > 1:950562/1‑61 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaataat > 1:346023/1‑61 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCgg > 1:2579881/1‑69 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCgg > 1:2593402/1‑69 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGc < 1:2718855/70‑1 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGc < 1:579093/70‑1 (MQ=255)
tAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGc > 1:1628420/1‑70 (MQ=255)
aaaGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCa < 1:2786816/70‑1 (MQ=255)
aaGACAACATCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCaa > 1:2608898/1‑70 (MQ=255)
acaacaTCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTAc > 1:3877240/1‑71 (MQ=255)
acaacaTCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTAc > 1:364686/1‑71 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCaa > 1:1091012/1‑65 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCaa > 1:2332547/1‑65 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCaa > 1:3996331/1‑65 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCaa > 1:1204942/1‑65 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGAT‑CCAATAATCATCGCGGCaa > 1:2916143/1‑64 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATcc < 1:2687425/47‑1 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATcc < 1:3814340/47‑1 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCg > 1:4021915/1‑71 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCg < 1:425641/71‑1 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCg > 1:660937/1‑71 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCg > 1:1735137/1‑71 (MQ=255)
aacaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCg > 1:2551298/1‑71 (MQ=255)
acaTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGc < 1:2079300/71‑1 (MQ=255)
aTCAGTTGTGACAACGTCACCTTGCGCTATGACGATCACGATCCCAATAATCATCGCGGCaa > 1:3472277/1‑62 (MQ=255)
aTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCaa > 1:1949732/1‑62 (MQ=255)
aTCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCaa > 1:1294286/1‑62 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGacgatca > 1:2064556/1‑37 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGacgatca > 1:2358851/1‑37 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGacgatca > 1:3030749/1‑37 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGacgatc > 1:3765904/1‑36 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaata < 1:2682096/48‑1 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaata < 1:931475/48‑1 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaata < 1:331247/48‑1 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatca < 1:3534107/52‑1 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatca < 1:4037962/52‑1 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatca < 1:3529444/52‑1 (MQ=255)
tCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatca < 1:2818216/52‑1 (MQ=255)
cAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatcat > 1:514296/1‑52 (MQ=255)
cAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatcat > 1:1314246/1‑52 (MQ=255)
aGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCAt > 1:512715/1‑68 (MQ=255)
aGTTGTGACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCAt > 1:3361664/1‑68 (MQ=255)
aGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatcatc > 1:2651722/1‑52 (MQ=255)
aGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatcatc > 1:1878728/1‑52 (MQ=255)
aGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAatcatc > 1:1846759/1‑52 (MQ=255)
ttGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCaataat < 1:1569425/46‑1 (MQ=255)
tgtgACAACGTCACCTTGCCCGATGACGATCACGATCCCAATAatca > 1:3853361/1‑47 (MQ=255)
gtgACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGcgcg > 1:2598085/1‑70 (MQ=255)
gtgACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCgcgg > 1:1476006/1‑71 (MQ=255)
gtgACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCgcgg > 1:3157997/1‑71 (MQ=255)
gtgACAACGTCACCTTGCGCGGTGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCgcgg > 1:3924443/1‑71 (MQ=255)
gtgACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCgcgg > 1:405176/1‑71 (MQ=255)
gtgACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCgcgg > 1:2132210/1‑71 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCgg > 1:247002/1‑41 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGc > 1:1168447/1‑51 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCa > 1:2086870/1‑52 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCa > 1:3507716/1‑52 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCa > 1:3213885/1‑52 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCa > 1:1774738/1‑52 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCt > 1:2388825/1‑71 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCt > 1:3570402/1‑71 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCt > 1:2216671/1‑71 (MQ=255)
aCCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCt > 1:2665109/1‑71 (MQ=255)
cgcgATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGtt < 1:3626362/70‑1 (MQ=255)
|
TCAGGGGTAATATAAGTGGGGAGAACGGGTTTAAAGACAACATCAGTTGTGACAACGTCACCTTGCGCGATGACGATCACGATCCCAATAATCATCGCGGCAATTACCGCATAGCGCGGCGCAACGGCCTTGGTT > W3110S.gb/1507181‑1507315
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
