mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 4,850 | T→G | 29.2% | F373V (TTC→GTC) | thrC → | threonine synthase |
| RA | 14,173 | T→C | 19.6% | A2A (GCT→GCC) | dnaJ → | chaperone Hsp40, co‑chaperone with DnaK |
| RA | 57,363 | T→C | 10.2% | intergenic (‑254/‑1) | imp ← / → djlA | exported protein required for envelope biosynthesis and integrity/DnaJ‑like protein, membrane anchored |
| RA | 58,390 | C→T | 11.4% | intergenic (+211/‑84) | djlA → / → yabP | DnaJ‑like protein, membrane anchored/hypothetical protein |
| RA | 70,434 | C→T | 91.2% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 84.3% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 90.3% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 83.4% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 84.5% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 84.1% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 78.5% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 85.7% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 78.0% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 75,677 | A→C | 23.9% | F541L (TTT→TTG) | sgrR ← | DNA‑binding transcriptional regulator |
| RA | 86,762 | T→C | 13.9% | I378T (ATC→ACC) | ilvI → | acetolactate synthase III, large subunit |
| RA | 131,249 | A→G | 14.3% | T4T (ACT→ACC) | yacH ← | hypothetical protein |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 192,898 | T→C | 23.8% | A9A (GCT→GCC) | frr → | ribosome recycling factor |
| RA | 199,072 | T→C | 58.7% | V382A (GTC→GCC) | yaeT → | conserved hypothetical protein |
| RA | 236,101 | A→C | 88.1% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 88.4% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 237,726 | A→G | 15.1% | N131S (AAC→AGC) | yafT → | predicted aminopeptidase |
| RA | 250,268 | C→T | 33.3% | pseudogene (197/756 nt) | mbhA → | ECK0231:JW5812:b0230; flagellar system protein, promoterless fragment |
| RA | 286,496 | T→C | 27.8% | F162L (TTT→CTT) | yagH → | predicted xylosidase/arabinosidase |
| RA | 301,283 | A→C | 21.6% | V172G (GTG→GGG) | yagT ← | predicted xanthine dehydrogenase, 2Fe‑2S subunit |
| RA | 306,593 | T→C | 44.7% | N655S (AAC→AGC) | yagX ← | predicted aromatic compound dioxygenase |
| RA | 330,966 | T→G | 13.7% | intergenic (+246/‑629) | betT → / → yahA | choline transporter of high affinity/predicted DNA‑binding transcriptional regulator |
| RA | 338,000 | A→G | 14.8% | H151R (CAC→CGC) | yahG → | conserved hypothetical protein |
| RA | 342,943 | T→C | 47.1% | V279A (GTT→GCT) | yahK → | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| RA | 346,362 | C→T | 11.5% | E436K (GAA→AAA) | prpR ← | DNA‑binding transcriptional regulator |
| RA | 352,300 | C→T | 56.0% | T124I (ACT→ATT) | prpE → | predicted propionyl‑CoA synthetase with ATPase domain |
| RA | 379,608 | G→A | 23.7% | I153I (ATC→ATT) | yaiO ← | hypothetical protein |
| RA | 405,632 | A→G | 19.4% | T2A (ACA→GCA) | aroL → | shikimate kinase II |
| RA | 412,184 | G→A | 14.3% | L932L (CTG→TTG) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 422,530 | T→C | 17.9% | N264N (AAT→AAC) | malZ → | maltodextrin glucosidase |
| RA | 430,031 | G→A | 14.3% | C68Y (TGC→TAC) | yajD → | conserved hypothetical protein |
| RA | 483,191 | T→C | 27.8% | D146G (GAT→GGT) | acrB ← | multidrug efflux system protein |
| RA | 500,029 | G→A | 47.2% | L227L (CTG→CTA) | gsk → | inosine/guanosine kinase |
| RA | 516,807 | C→T | 36.6% | E233K (GAA→AAA) | ybbN ← | predicted thioredoxin domain‑containing protein |
| RA | 517,941 | A→G | 23.1% | S145P (TCA→CCA) | ybbO ← | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| RA | 542,820 | C→T | 28.9% | A151T (GCC→ACC) | ylbA ← | conserved hypothetical protein |
| RA | 546,484 | G→T | 27.4% | G194V (GGC→GTC) | fdrA → | predicted acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 594,454 | T→C | 33.3% | K71K (AAA→AAG) | cusR ← | DNA‑binding response regulator in two‑component regulatory system with CusS |
| RA | 599,692 | G→A | 20.0% | A586T (GCG→ACG) | cusA → | copper/silver efflux system, membrane component |
| RA | 633,015 | G→T | 51.5% | V69V (GTG→GTT) | ybdL → | methionine aminotransferase, PLP‑dependent |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 664,084 | C→T | 35.3% | G101D (GGC→GAC) | dacA ← | D‑alanyl‑D‑alanine carboxypeptidase |
| RA | 682,913 | C→T | 18.5% | V301V (GTG→GTA) | hscC ← | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| RA | 686,526 | A→G | 9.6% | I189T (ATC→ACC) | gltJ ← | glutamate and aspartate transporter subunit |
| RA | 690,095 | A→G | 47.1% | D403D (GAT→GAC) | lnt ← | apolipoprotein N‑acyltransferase |
| RA | 707,271 | C→T | 16.1% | H253Y (CAC→TAC) | glnS → | glutamyl‑tRNA synthetase |
| RA | 712,019 | G→A | 13.5% | intergenic (‑132/+8) | fldA ← / ← ybfE | flavodoxin 1/LexA regulated protein |
| RA | 726,253 | A→G | 13.6% | R402R (CGT→CGC) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 767,363 | T→C | 26.5% | L320L (TTG→CTG) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzyme IIABC components |
| RA | 809,043 | T→C | 13.0% | I213V (ATT→GTT) | bioA ← | 7,8‑diaminopelargonic acid synthase, PLP‑dependent |
| RA | 812,334 | C→A | 25.0% | R131S (CGC→AGC) | bioC → | predicted methltransferase, enzyme of biotin synthesis |
| RA | 823,380 | G→A | 41.2% | P261L (CCG→CTG) | ybhO ← | cardiolipin synthase 2 |
| RA | 847,104 | A→G | 17.2% | R146R (CGT→CGC) | glnP ← | glutamine transporter subunit |
| RA | 848,718 | A→G | 34.8% | intergenic (‑292/+112) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein |
| RA | 865,658 | A→G | 9.1% | F377L (TTT→CTT) | moeA ← | molybdopterin biosynthesis protein |
| RA | 867,056 | C→T | 10.5% | Q23* (CAA→TAA) | iaaA → | L‑asparaginase |
| RA | 897,644 | T→G | 19.1% | W47G (TGG→GGG) | potI → | putrescine transporter subunit |
| RA | 905,152 | Δ1 bp | 10.9% | coding (138/324 nt) | ybjQ → | conserved hypothetical protein |
| RA | 922,060 | C→T | 18.3% | A431V (GCC→GTC) | macB → | fused macrolide transporter subunits and ATP‑binding component and membrane component of ABC superfamily |
| RA | 940,557 | A→G | 14.6% | P236P (CCA→CCG) | serS → | seryl‑tRNA synthetase, also charges selenocysteinyl‑tRNA with serine |
| RA | 1,006,848 | A→T | 12.8% | K159* (AAA→TAA) | ycbW → | hypothetical protein |
| RA | 1,023,649 | G→A | 24.2% | L219L (CTC→CTT) | yccS ← | predicted inner membrane protein |
| RA | 1,029,877 | C→G | 22.2% | G143A (GGC→GCC) | yccW ← | predicted methyltransferase |
| RA | 1,042,843 | Δ1 bp | 27.1% | coding (1790/2181 nt) | yccC ← | cryptic autophosphorylating protein tyrosine kinase Etk |
| RA | 1,044,904 | T→C | 38.7% | E65E (GAA→GAG) | etp ← | phosphotyrosine‑protein phosphatase |
| RA | 1,051,238 | T→C | 9.7% | intergenic (+286/+147) | insB → / ← cspH | IS1 transposase InsAB'/stress protein, member of the CspA‑family |
| RA | 1,082,168 | G→A | 15.6% | pseudogene (391/830 nt) pseudogene (293/732 nt) |
ycdN → ycdN → |
ECK1007:JW5141+JW1002:b4490; predicted membrane protein ECK1007:JW1002:b1017; hypothetical protein, C‑ter fragment |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,207,066 | A→G | 20.6% | E440E (GAA→GAG) | ymfN → | predicted DNA‑binding transcriptional regulator |
| RA | 1,224,639 | A→G | 11.9% | intergenic (‑143/‑403) | ymgG ← / → ymgH | hypothetical protein/hypothetical protein |
| RA | 1,237,778 | C→T | 9.7% | R347R (CGG→CGA) | ycgB ← | conserved hypothetical protein |
| RA | 1,249,123 | G→A | 12.8% | intergenic (‑170/+150) | treA ← / ← dhaH | periplasmic trehalase/fused predicted dihydroxyacetone‑specific PTS enzyme HPr component and EI component |
| RA | 1,275,296 | A→G | 12.5% | intergenic (‑120/‑206) | ychN ← / → ychP | conserved hypothetical protein/predicted invasin |
| RA | 1,280,527 | A→G | 24.2% | S332G (AGC→GGC) | narK → | nitrate/nitrite transporter |
| RA | 1,282,409 | A→G | 20.0% | P323P (CCA→CCG) | narG → | nitrate reductase 1, alpha subunit |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,309,136 | C→T | 12.7% | V408V (GTG→GTA) | cls ← | cardiolipin synthase 1 |
| RA | 1,336,529 | C→T | 32.3% | L321L (CTG→TTG) | cysB → | DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
| RA | 1,366,654 | T→C | 20.0% | Y237H (TAT→CAT) | puuB → | gamma‑Glu‑putrescine oxidase, FAD/NAD(P)‑binding |
| RA | 1,367,159 | C→T | 31.4% | T405M (ACG→ATG) | puuB → | gamma‑Glu‑putrescine oxidase, FAD/NAD(P)‑binding |
| RA | 1,389,988 | C→T | 32.3% | intergenic (+13/+31) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| RA | 1,413,273 | G→T | 23.1% | R130R (CGC→CGA) | ydaO ← | predicted C32 tRNA thiolase |
| RA | 1,460,224 | T→C | 12.2% | S83P (TCA→CCA) | paaG → | acyl‑CoA hydratase |
| RA | 1,475,513 | A→G | 37.5% | pseudogene (8408/8622 nt) pseudogene (3110/3324 nt) |
ydbA → ydbA → |
ECK1398:JW5802+JW1402:b4492; predicted outer membrane protein ECK1398:JW1402:b1405; predicted outer membrane protein, C‑ter fragment |
| RA | 1,477,861 | C→T | 15.0% | P335L (CCG→CTG) | ydbD → | hypothetical protein |
| RA | 1,482,053 | A→G | 14.6% | D401G (GAT→GGT) | ynbC → | predicted hydrolase |
| RA | 1,487,609 | C→T | 21.4% | R926R (CGC→CGT) | hrpA → | ATP‑dependent helicase |
| RA | 1,489,179 | T→C | 26.1% | F77F (TTT→TTC) | ydcF → | conserved hypothetical protein |
| RA | 1,507,250 | A→G | 21.9% | I182T (ATC→ACC) | ydcO ← | predicted benzoate transporter |
| RA | 1,545,084 | C→T | 16.0% | G231R (GGG→AGG) | narU ← | nitrate/nitrite transporter |
| RA | 1,557,824 | C→T | 21.1% | Q57Q (CAG→CAA) | bdm ← | biofilm‑dependent modulation protein |
| RA | 1,594,973 | A→G | 10.2% | pseudogene (807/1401 nt) | ydeU ← | ECK1502:JW1502:b1509; conserved hypothetical protein |
| RA | 1,600,711 | A→G | 20.5% | S405P (TCA→CCA) | ydeV ← | predicted sugar kinase |
| RA | 1,608,013 | G→A | 25.0% | G67E (GGA→GAA) | lsrF → | predicted aldolase |
| RA | 1,621,163 | A→G | 22.9% | Q110Q (CAA→CAG) | marR → | DNA‑binding transcriptional repressor |
| RA | 1,639,860 | T→C | 30.9% | intergenic (‑37/+309) | ynfN ← / ← cspI | hypothetical protein/cold shock protein |
| RA | 1,649,687 | T→C | 43.1% | Y14H (TAT→CAT) | dicA → | predicted regulator for DicB |
| RA | 1,656,712 | C→A | 19.5% | Q48H (CAG→CAT) | rspA ← | predicted dehydratase |
| RA | 1,662,320 | A→G | 13.9% | R17R (AGA→AGG) | ynfF → | oxidoreductase subunit |
| RA | 1,672,743 | A→G | 36.0% | intergenic (+77/‑347) | ynfM → / → asr | predicted transporter/acid shock‑inducible periplasmic protein |
| RA | 1,682,197 | Δ1 bp | 33.3% | coding (927/1383 nt) | ydgI → | predicted arginine/ornithine antiporter transporter |
| RA | 1,696,825 | T→C | 19.6% | I321V (ATT→GTT) | uidA ← | beta‑D‑glucuronidase |
| RA | 1,698,594 | A→G | 26.0% | L58S (TTG→TCG) | uidR ← | DNA‑binding transcriptional repressor |
| RA | 1,701,562:1 | +C | 28.9% | coding (494/1593 nt) | malX → | fused maltose and glucose‑specific PTS enzyme IIBC components |
| RA | 1,713,297 | A→G | 12.8% | T21A (ACC→GCC) | nth → | DNA glycosylase and apyrimidinic (AP) lyase |
| RA | 1,769,899 | C→T | 8.3% | S167S (TCG→TCA) | ydiJ ← | predicted FAD‑linked oxidoreductase |
| RA | 1,796,665 | C→T | 41.2% | A68T (GCG→ACG) | btuC ← | vitamin B12 transporter subunit |
| RA | 1,800,301 | A→C | 25.0% | F119C (TTC→TGC) | pheS ← | phenylalanine tRNA synthetase, alpha subunit |
| RA | 1,803,912 | G→T | 27.2% | H125N (CAT→AAT) | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,804,377 | A→G | 21.0% | intergenic (‑93/‑431) | thrS ← / → arpB | threonyl‑tRNA synthetase/ECK1718:JW5278:b1720; hypothetical protein, N‑ter fragment |
| RA | 1,816,575:1 | +G | 28.6% | coding (995/2262 nt) | katE → | hydroperoxidase HPII(III) |
| RA | 1,824,257 | T→C | 40.4% | F29S (TTT→TCT) | nadE → | NAD synthetase, NH3/glutamine‑dependent |
| RA | 1,832,787 | T→C | 16.3% | M304V (ATG→GTG) | astC ← | succinylornithine transaminase, PLP‑dependent |
| RA | 1,849,589 | C→T | 16.3% | G45D (GGT→GAT) | selD ← | selenophosphate synthase |
| RA | 1,861,208 | C→T | 12.7% | G246S (GGT→AGT) | ydjK ← | predicted transporter |
| RA | 1,871,291 | A→G | 8.8% | E208G (GAA→GGA) | yeaH → | conserved hypothetical protein |
| RA | 1,885,888 | A→G | 13.0% | T329T (ACA→ACG) | yeaV → | predicted transporter |
| RA | 1,910,338 | C→T | 8.3% | *48* (TGA→TAA) | yobG ← | hypothetical protein |
| RA | 1,915,303 | A→G | 48.5% | F410L (TTT→CTT) | prc ← | carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,989,605 | G→A | 16.0% | intergenic (+40/+39) | yecI → / ← yecJ | predicted ferritin‑like protein/hypothetical protein |
| RA | 2,002,183 | G→A | 36.8% | R114C (CGC→TGC) | fliY ← | cystine transporter subunit |
| RA | 2,045,238 | A→G | 25.0% | intergenic (+203/+367) | yodB → / ← serU | predicted cytochrome/tRNA‑Ser |
| RA | 2,081,459 | A→G | 25.4% | F36L (TTT→CTT) | yeeX ← | conserved hypothetical protein |
| RA | 2,096,084 | G→A | 17.5% | E160E (GAG→GAA) | hisB → | fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,117,348 | C→T | 41.5% | G229D (GGC→GAC) | wcaM ← | predicted colanic acid biosynthesis protein |
| RA | 2,142,075 | T→C | 32.6% | T559A (ACG→GCG) | asmA ← | predicted assembly protein |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,178,242 | G→A | 15.5% | P48S (CCT→TCT) | gatA ← | galactitol‑specific enzyme IIA component of PTS |
| RA | 2,183,814 | T→A | 27.1% | V129E (GTG→GAG) | yegU → | predicted hydrolase |
| RA | 2,213,335 | A→G | 34.0% | N301S (AAT→AGT) | yehQ → | hypothetical protein |
| RA | 2,215,186 | A→G | 25.0% | V115V (GTT→GTC) | yehS ← | conserved hypothetical protein |
| RA | 2,221,135 | T→C | 15.4% | T253A (ACC→GCC) | yehY ← | predicted transporter subunit |
| RA | 2,257,455 | C→T | 10.2% | G9R (GGA→AGA) | yeiJ ← | predicted nucleoside transporter |
| RA | 2,274,249 | A→G | 23.5% | T64A (ACT→GCT) | rtn → | conserved hypothetical protein |
| RA | 2,291,258 | C→T | 22.1% | G326D (GGC→GAC) | yejO ← | predicted autotransporter outer membrane protein |
| RA | 2,295,693 | C→T | 14.3% | A18T (GCG→ACG) | ccmH ← | heme lyase, CcmH subunit |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,335,995 | C→T | 25.0% | pseudogene (3078/4605 nt) pseudogene (3078/4104 nt) |
yfaS ← yfaS ← |
ECK2220:JW2222+JW2221:b4500; hypothetical protein ECK2220:JW2222:b2228; hypothetical protein, N‑ter fragment |
| RA | 2,393,339 | A→G | 10.1% | N30S (AAT→AGT) | yfbO → | hypothetical protein |
| RA | 2,394,072 | A→G | 23.5% | D97G (GAT→GGT) | yfbP → | hypothetical protein |
| RA | 2,405,008 | C→T | 27.8% | E406E (GAG→GAA) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,413,837 | T→C | 37.5% | C277C (TGT→TGC) | yfbQ → | predicted aminotransferase |
| RA | 2,426,403 | G→A | 29.7% | G113R (GGG→AGG) | yfcG → | predicted glutathione S‑transferase |
| RA | 2,449,567 | C→T | 23.1% | V17I (GTT→ATT) | yfcL ← | hypothetical protein |
| RA | 2,457,604 | A→G | 8.7% | L60P (CTG→CCG) | yfcS ← | predicted periplasmic pilus chaperone |
| RA | 2,461,423 | G→A | 22.2% | intergenic (‑331/+350) | yfcV ← / ← sixA | predicted fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| RA | 2,472,806 | C→T | 32.1% | D272D (GAC→GAT) | intS → | predicted prophage CPS‑53 integrase |
| RA | 2,497,222 | A→G | 25.0% | Y59H (TAT→CAT) | oxc ← | predicted oxalyl‑CoA decarboxylase |
| RA | 2,508,088 | C→A | 30.1% | G615V (GGC→GTC) | ypdD ← | fused predicted PTS enzymes Hpr component, enzyme I component, and enzyme IIA component |
| RA | 2,521,463 | C→T | 48.5% | A606T (GCG→ACG) | yfeA ← | predicted diguanylate cyclase |
| RA | 2,526,348 | T→C | 9.7% | intergenic (‑230/‑29) | gltX ← / → valU | glutamyl‑tRNA synthetase/tRNA‑Val |
| RA | 2,550,560 | A→G | 33.3% | C166R (TGC→CGC) | yfeT ← | predicted DNA‑binding transcriptional regulator |
| RA | 2,562,915 | T→C | 17.1% | Y404C (TAC→TGC) | eutB ← | ethanolamine ammonia‑lyase, large subunit, heavy chain |
| RA | 2,574,782 | A→C | 18.5% | V751G (GTG→GGG) | maeB ← | fused malic enzyme predicted oxidoreductase and predicted phosphotransacetylase |
| RA | 2,611,108 | T→C | 20.0% | F185L (TTC→CTC) | hyfR → | DNA‑binding transcriptional activator, formate sensing |
| RA | 2,620,788 | A→G | 18.2% | E312E (GAA→GAG) | purM → | phosphoribosylaminoimidazole synthetase |
| RA | 2,629,792 | T→C | 41.5% | D467G (GAC→GGC) | guaA ← | GMP synthetase |
| RA | 2,655,114 | C→T | 28.0% | intergenic (‑100/+78) | pepB ← / ← yfhJ | aminopeptidase B/conserved hypothetical protein |
| RA | 2,655,568 | C→T | 12.9% | G58S (GGT→AGT) | fdx ← | [2Fe‑2S] ferredoxin |
| RA | 2,663,570 | Δ1 bp | 30.9% | coding (552/882 nt) | yfhR → | predicted peptidase |
| RA | 2,729,684 | T→C | 23.7% | noncoding (130/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 2,750,169 | C→T | 38.4% | T228M (ACG→ATG) | yfjB → | NAD kinase |
| RA | 2,788,749 | C→T | 31.8% | P38S (CCG→TCG) | ygaF → | hypothetical protein |
| RA | 2,791,255 | G→A | 45.1% | G443S (GGC→AGC) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| RA | 2,809,581 | G→A | 87.4% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,829,103 | T→C | 23.7% | V212A (GTG→GCG) | gutQ → | predicted phosphosugar‑binding protein |
| RA | 2,860,149 | G→T | 33.3% | A22S (GCA→TCA) | ygbJ → | predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain |
| RA | 2,863,108 | T→C | 28.6% | L73L (TTA→CTA) | ygbM → | conserved hypothetical protein |
| RA | 2,865,292 | G→A | 11.8% | Q267* (CAG→TAG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,886,205 | A→G | 40.6% | intergenic (‑330/+29) | ygcB ← / ← cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| RA | 2,892,483 | A→G | 39.5% | K391E (AAA→GAA) | ygcN → | predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| RA | 2,894,340 | C→T | 25.0% | W32* (TGG→TGA) | ygcQ ← | predicted flavoprotein |
| RA | 2,902,330 | A→T | 27.3% | intergenic (+300/+1073) | ygcE → / ← ygcF | predicted kinase/conserved hypothetical protein |
| RA | 2,927,326 | G→A | 17.0% | V148M (GTG→ATG) | sdaC → | predicted serine transporter |
| RA | 2,939,281 | C→T | 45.5% | E207K (GAA→AAA) | ygdE ← | predicted methyltransferase |
| RA | 2,953,831 | T→C | 22.5% | T277A (ACA→GCA) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,960,805 | T→C | 37.5% | K94E (AAA→GAA) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,971,531 | G→T | 22.2% | L330I (CTA→ATA) | ygeD ← | predicted inner membrane protein |
| RA | 2,978,961 | C→T | 10.6% | A111T (GCA→ACA) | ygeA ← | predicted racemase |
| RA | 2,983,818 | A→G | 33.6% | V144A (GTG→GCG) | yqeF ← | predicted acyltransferase |
| RA | 2,989,682 | C→T | 21.4% | intergenic (+26/‑242) | ygeF → / → ygeG | hypothetical protein/predicted chaperone |
| RA | 2,989,906 | A→G | 30.4% | intergenic (+250/‑18) | ygeF → / → ygeG | hypothetical protein/predicted chaperone |
| RA | 2,992,923 | C→T | 25.6% | pseudogene (227/375 nt) | pbl → | ECK2852:JW5457:b2854; predicted peptidoglycan‑binding enzyme |
| RA | 2,993,568 | C→A | 25.4% | intergenic (‑9/+25) | ygeK ← / ← ygeL | predicted DNA‑binding transcriptional regulator/hypothetical protein |
| RA | 3,031,910 | A→G | 29.2% | N64D (AAC→GAC) | idi → | isopentenyl diphosphate isomerase |
| RA | 3,053,087 | T→A | 29.7% | Y137F (TAT→TTT) | pepP ← | proline aminopeptidase P II |
| RA | 3,062,130 | A→C | 38.7% | E163A (GAA→GCA) | argK → | membrane ATPase/protein kinase |
| RA | 3,065,306 | A→G | 24.1% | V175A (GTT→GCT) | ygfI ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,093,680 | G→A | 23.2% | H19H (CAC→CAT) | yggR ← | predicted transporter |
| RA | 3,100,981 | A→G | 27.8% | H176H (CAT→CAC) | yggH ← | tRNA (m7G46) methyltransferase, SAM‑dependent |
| RA | 3,104,160 | C→T | 29.0% | R358C (CGC→TGC) | mltC → | membrane‑bound lytic murein transglycosylase C |
| RA | 3,128,408 | T→C | 33.4% | D155G (GAC→GGC) | yghO ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,140,619 | C→T | 39.6% | A343T (GCA→ACA) | hybC ← | hydrogenase 2, large subunit |
| RA | 3,141,409 | C→T | 28.6% | A79A (GCG→GCA) | hybC ← | hydrogenase 2, large subunit |
| RA | 3,163,647 | T→A | 35.7% | N328I (AAC→ATC) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,179,239 | C→T | 16.2% | L55L (CTG→TTG) | ygiC → | hypothetical protein |
| RA | 3,204,990 | T→C | 45.0% | intergenic (‑78/‑129) | ygiP ← / → ttdA | predicted DNA‑binding transcriptional regulator/L‑tartrate dehydratase, alpha subunit |
| RA | 3,211,677 | C→T | 41.2% | intergenic (+169/‑26) | dnaG → / → rpoD | DNA primase/RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,222,206 | C→T | 8.8% | N306N (AAC→AAT) | ebgA → | cryptic beta‑D‑galactosidase, alpha subunit |
| RA | 3,230,217 | A→G | 36.0% | intergenic (+322/‑104) | ygjK → / → fadH | predicted glycosyl hydrolase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,232,470 | A→G | 16.0% | L111L (TTG→CTG) | ygjM ← | predicted DNA‑binding transcriptional regulator |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,272,348 | C→T | 24.4% | G89S (GGT→AGT) | garR ← | tartronate semialdehyde reductase |
| RA | 3,277,106 | A→G | 14.6% | T84A (ACT→GCT) | sohA → | predicted regulator |
| RA | 3,321,282 | C→T | 6.3% | V63I (GTT→ATT) | yhbX ← | predicted hydrolase, inner membrane |
| RA | 3,331,819 | A→G | 17.1% | F258L (TTT→CTT) | yhbE ← | conserved inner membrane protein |
| RA | 3,343,341 | T→C | 23.1% | I36T (ATC→ACC) | yhbN → | predicted transporter subunit |
| RA | 3,348,085 | G→A | 31.7% | E89K (GAA→AAA) | npr → | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr) |
| RA | 3,359,906 | T→C | 31.1% | M285T (ATG→ACG) | gltD → | glutamate synthase, 4Fe‑4S protein, small subunit |
| RA | 3,360,083 | T→C | 40.0% | F344S (TTC→TCC) | gltD → | glutamate synthase, 4Fe‑4S protein, small subunit |
| RA | 3,383,928 | C→T | 17.5% | A66T (GCG→ACG) | mdh ← | malate dehydrogenase, NAD(P)‑binding |
| RA | 3,404,628 | A→C | 36.0% | intergenic (+315/‑663) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| RA | 3,404,737 | C→T | 16.1% | intergenic (+424/‑554) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| RA | 3,404,829 | C→G | 31.3% | intergenic (+516/‑462) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| RA | 3,442,070 | A→G | 18.4% | T497A (ACG→GCG) | thiC → | thiamin (pyrimidine moiety) biosynthesis protein |
| RA | 3,449,319 | A→G | 35.7% | G671G (GGT→GGC) | rpoC ← | RNA polymerase, beta prime subunit |
| RA | 3,488,502 | C→T | 41.3% | L47L (CTG→TTG) | yijO → | predicted DNA‑binding transcriptional regulator |
| RA | 3,497,705 | T→G | 7.9% | R20R (CGT→CGG) | gldA → | glycerol dehydrogenase, NAD |
| RA | 3,515,054 | A→G | 15.0% | N41D (AAC→GAC) | hslU → | molecular chaperone and ATPase component of HslUV protease |
| RA | 3,519,938 | A→G | 29.2% | E160E (GAA→GAG) | glpK → | glycerol kinase |
| RA | 3,538,437 | G→A | 43.4% | A170V (GCA→GTA) | rhaS ← | DNA‑binding transcriptional activator, L‑rhamnose‑binding |
| RA | 3,560,351 | G→A | 19.1% | P62L (CCC→CTC) | rbn ← | tRNA processing exoribonuclease BN |
| RA | 3,560,998 | A→G | 21.0% | F44S (TTT→TCT) | yihX ← | predicted hydrolase |
| RA | 3,566,219 | A→G | 40.0% | intergenic (+53/‑61) | yihS → / → yihR | predicted glucosamine isomerase/predicted aldose‑1‑epimerase |
| RA | 3,591,039 | G→A | 25.0% | intergenic (+28/+13) | yihG → / ← yihF | predicted endonuclease/conserved hypothetical protein |
| RA | 3,594,183 | A→G | 20.5% | D28D (GAT→GAC) | yihE ← | predicted kinase |
| RA | 3,602,757 | T→A | 31.3% | L260F (TTA→TTT) | trkH ← | potassium transporter |
| RA | 3,608,041 | C→T | 23.3% | L45L (CTG→TTG) | fadA → | 3‑ketoacyl‑CoA thiolase |
| RA | 3,633,778 | T→C | 22.2% | C97C (TGT→TGC) | yigG → | predicted inner membrane protein |
| RA | 3,671,661 | G→A | 29.1% | R204Q (CGG→CAG) | rhlB → | ATP‑dependent RNA helicase |
| RA | 3,701,075 | T→C | 35.3% | L107L (TTA→TTG) | rbsC ← | D‑ribose transporter subunit |
| RA | 3,712,033 | G→A | 31.8% | M328I (ATG→ATA) | gidA → | glucose‑inhibited cell‑division protein |
| RA | 3,714,423 | C→T | 14.3% | H61Y (CAC→TAC) | atpI → | ATP synthase, membrane‑bound accesory subunit |
| RA | 3,718,376 | G→A | 36.7% | intergenic (+9/‑42) | atpA → / → atpG | F1 sector of membrane‑bound ATP synthase, alpha subunit/F1 sector of membrane‑bound ATP synthase, gamma subunit |
| RA | 3,730,340 | C→T | 7.9% | T75T (ACC→ACT) | bglG → | transcriptional antiterminator of the bgl operon |
| MC JC | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,913 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| RA | 3,748,215 | G→A | 31.7% | S256S (AGC→AGT) | tnaB ← | tryptophan transporter of low affinity |
| MC JC | 3,750,593 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,769,914 | G→A | 14.3% | A410T (GCC→ACC) | dgoT → | D‑galactonate transporter |
| RA | 3,824,280 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,533:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,867,919 | C→T | 14.6% | G73D (GGC→GAC) | mtlA ← | fused mannitol‑specific PTS enzyme IIABC components |
| RA | 3,903,549 | T→C | 19.1% | S104P (TCA→CCA) | bax → | conserved hypothetical protein |
| RA | 3,958,682 | C→T | 40.4% | A69V (GCC→GTC) | yhjJ → | predicted zinc‑dependent peptidase |
| RA | 3,960,751 | C→T | 51.1% | R83H (CGT→CAT) | kdgK ← | ketodeoxygluconokinase |
| RA | 3,998,196 | A→G | 35.1% | Y454H (TAT→CAT) | yhiP ← | predicted transporter |
| RA | 4,000,806 | A→T | 25.1% | D37V (GAT→GTT) | yhiO → | predicted universal stress (ethanol tolerance) protein B |
| RA | 4,007,539 | G→A | 19.1% | pseudogene (367/393 nt) | yhiK → | ECK3474:JW5674:b3489; hypothetical protein |
| RA | 4,046,323 | G→A | 46.5% | G38D (GGC→GAC) | livG → | leucine/isoleucine/valine transporter subunit |
| RA | 4,068,392 | T→C | 33.3% | M493T (ATG→ACG) | glgB → | 1,4‑alpha‑glucan branching enzyme |
| RA | 4,074,022 | G→A | 20.4% | A63T (GCC→ACC) | glgP → | glycogen phosphorylase |
| RA | 4,085,470 | G→A | 20.0% | R622C (CGT→TGT) | malT ← | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding |
| RA | 4,092,715 | G→A | 33.5% | A382V (GCG→GTG) | gntT ← | gluconate transporter, high‑affinity GNT I system |
| RA | 4,103,846 | T→C | 22.7% | Y5H (TAC→CAC) | ompR → | DNA‑binding response regulator in two‑component regulatory system with EnvZ |
| RA | 4,125,813 | C→T | 35.3% | P152L (CCT→CTT) | rpe → | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 4,130,879:1 | +A | 15.4% | coding (275/1227 nt) | yhfW → | predicted mutase |
| RA | 4,184,035 | C→A | 25.5% | G3* (GGA→TGA) R269M (AGG→ATG) |
gspD ← gspC ← |
general secretory pathway component, cryptic general secretory pathway component, cryptic |
| RA | 4,208,832 | A→G | 32.9% | H126R (CAC→CGC) | yrdD → | predicted DNA topoisomerase |
| RA | 4,225,730 | G→A | 31.1% | T117I (ACT→ATT) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,249,681 | A→C | 26.5% | F111V (TTC→GTC) | malE ← | maltose transporter subunit |
| RA | 4,280,356 | C→T | 6.3% | H432Y (CAT→TAT) | yjcC → | predicted signal transduction protein |
| RA | 4,295,216 | G→A | 54.4% | G38D (GGC→GAC) | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| MC JC | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,326,669 | A→G | 41.2% | L145S (TTA→TCA) | phnF ← | transcriptional regulator of phosphonate uptake and biodegradation |
| RA | 4,354,061 | C→T | 24.6% | G218G (GGG→GGA) | dcuR ← | DNA‑binding response regulator in two‑component regulatory system with DcuS |
| RA | 4,361,585 | C→T | 36.1% | P571P (CCG→CCA) | cadA ← | lysine decarboxylase 1 |
| RA | 4,362,267 | T→G | 42.7% | E344A (GAA→GCA) | cadA ← | lysine decarboxylase 1 |
| RA | 4,371,273 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,405,345 | G→A | 27.6% | intergenic (+67/‑9) | hfq → / → hflX | HF‑I, host factor for RNA phage Q beta replication/predicted GTPase |
| RA | 4,445,264 | C→T | 10.3% | V212I (GTT→ATT) | ytfL ← | predicted inner membrane protein |
| RA | 4,453,455 | G→A | 10.8% | A28T (GCT→ACT) | chpB → | toxin of the ChpB‑ChpS toxin‑antitoxin system |
| RA | 4,464,055 | A→T | 25.0% | intergenic (+62/‑180) | pmbA → / → cybC | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17/ECK4231:JW4195:b4236; cytochrome b562, truncated |
| RA | 4,482,473 | A→G | 35.5% | L174P (CTC→CCC) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,487,895 | T→C | 21.4% | K209E (AAA→GAA) | valS ← | valyl‑tRNA synthetase |
| RA | 4,509,018 | A→G | 6.5% | G93G (GGA→GGG) | yjhB → | predicted transporter |
| RA | 4,511,217 | T→C | 8.3% | intergenic (+130/+91) | yjhC → / ← yjhD | predicted oxidoreductase/ECK4271:JW5770:b4281; KpLE2 phage‑like element; hypothetical protein |
| RA | 4,525,729 | A→G | 6.0% | V325A (GTT→GCT) | yjhF ← | predicted transporter |
| RA | 4,527,342 | C→T | 26.4% | E479K (GAG→AAG) | yjhG ← | predicted dehydratase |
| RA | 4,544,281 | T→C | 24.2% | intergenic (‑98/‑1358) | yjhA ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,546,724 | T→C | 41.4% | S2S (AGT→AGC) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,547,129 | G→A | 12.6% | M137I (ATG→ATA) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,549,752 | C→T | 19.0% | intergenic (+41/‑26) | fimC → / → fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
| RA | 4,549,754 | G→A | 46.5% | intergenic (+43/‑24) | fimC → / → fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
| RA | 4,549,768 | C→T | 13.0% | intergenic (+57/‑10) | fimC → / → fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
| RA | 4,563,589 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,581,599 | T→C | 31.4% | K348E (AAA→GAA) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| RA | 4,591,162 | C→A | 28.4% | V112V (GTG→GTT) | hsdR ← | endonuclease R |
| RA | 4,605,956 | C→T | 33.3% | V82I (GTT→ATT) | dnaT ← | DNA biosynthesis protein |
| RA | 4,616,051 | T→C | 9.7% | intergenic (+366/‑27) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
| RA | 4,635,047 | G→A | 31.4% | A53V (GCG→GTG) | yjjK ← | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 4,641,490:1 | +G | 40.7% | coding (113/1425 nt) | creC → | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 288484 | 288498 | 15 | 5 [2] | [3] 7 | yagI/argF | predicted DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F |
| * | * | ÷ | W3110S.gb | 422761 | 422786 | 26 | 5 [3] | [2] 5 | malZ | maltodextrin glucosidase |
| * | * | ÷ | W3110S.gb | 573861–575008 | 575999 | 992–2139 | 8 [4] | [0] 107 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 721524 | 721540 | 17 | 6 [4] | [3] 5 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | W3110S.gb | 907998 | 908013 | 16 | 5 [4] | [4] 5 | ybjT | conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain |
| * | * | ÷ | W3110S.gb | 1173184 | 1173214 | 31 | 6 [4] | [0] 5 | mfd | transcription‑repair coupling factor |
| * | * | ÷ | W3110S.gb | 1328310 | 1328345 | 36 | 8 [3] | [4] 5 | yciQ | predicted inner membrane protein |
| * | * | ÷ | W3110S.gb | 1371169 | 1371226 | 58 | 5 [4] | [4] 5 | pspD | peripheral inner membrane phage‑shock protein |
| * | * | ÷ | W3110S.gb | 2041777 | 2041811 | 35 | 6 [3] | [2] 6 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2569110 | 2569138 | 29 | 5 [4] | [2] 5 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 2827383 | 2827445 | 63 | 5 [4] | [4] 7 | gutM | DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 3124852 | 3124890 | 39 | 6 [4] | [3] 6 | glcE | glycolate oxidase FAD binding subunit |
| * | * | ÷ | W3110S.gb | 3799033 | 3799078 | 46 | 5 [4] | [4] 5 | yicM | predicted transporter |
| * | * | ÷ | W3110S.gb | 4213622–4215889 | 4216706–4215891 | 3–3085 | 5 [4] | [4] 6 | rrlE–[rrfE] | rrlE,[rrfE] |
| * | * | ÷ | W3110S.gb | 4329950 | 4329975 | 26 | 6 [4] | [4] 5 | phnC/phnB | phosphonate/organophosphate ester transporter subunit/conserved hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 57 (1.360) | 251 (7.720) +CGCGTACAACT |
51/78 | NT | 84.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 65 (1.550) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | W3110S.gb | = 71265 | 41 (0.980) | 119 (3.970) +AGGGTCCCTAAGTC |
39/72 | NT | 87.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 6 (0.140) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | W3110S.gb | 205097 = | 33 (0.790) | 41 (1.170) +TTATAACA |
10/84 | NT | 64.9% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | W3110S.gb | = 467579 | 20 (0.480) | intergenic (+125/‑28) | cof/ybaO | thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | = 236798 | 15 (0.360) | 120 (6.370) +27 bp |
31/46 | NT | 86.4% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 69 (1.640) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 47 (1.120) | 17/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | W3110S.gb | 314453 = | 30 (0.720) | 39 (0.970) +TC |
22/96 | NT | 73.1% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 51 (1.220) | 19/100 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 63 (1.500) | 29/100 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 713380 = | 51 (1.220) | 230 (5.970) | 50/92 | NT | 85.5% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 31 (0.800) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 713954 | 65 (1.550) | 365 (8.700) | 66/100 | NT | 83.6% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 78 (1.860) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | 1209367 = | 13 (0.310) | 15 (0.530) | 10/68 | NT | 71.8% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 3 (0.110) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1209382 | 15 (0.360) | 22 (0.780) | 11/68 | NT | 77.1% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 3 (0.110) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | 2018571 = | 1 (0.020) | 32 (0.810) | 17/94 | NT | 97.1% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 4 (0.100) | 32 (0.800) | 14/96 | NT | 89.3% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 64 (1.560) | 31/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 47 (1.140) | 21/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 36 (0.860) | 19/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 76 (1.810) | 31/100 | NT | 77.6% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 22 (0.520) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | 3748799 = | 3 (0.070) | 70 (1.670) | 26/100 | NT | 95.9% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | 4547364 = | 6 (0.140) | 19 (0.550) | 13/82 | NT | 79.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 5 (0.150) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | W3110S.gb | = 4547372 | 6 (0.140) | 20 (0.580) | 15/82 | NT | 80.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 5 (0.150) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||