Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F17 I0 R2
|
276 |
45.3 |
3729697 |
93.0% |
3468618 |
60.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
3,261,134 |
Δ1,199 bp |
100% |
|
insH–[tdcD] |
insH, [tdcD] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
3261134–3262331 |
3262332 |
2–1199 |
72 [0] |
[0] 68 |
insH–[tdcD] |
insH,[tdcD] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 3261133 | 0 (0.000) | 51 (1.500) |
24/92 |
NT |
100% |
intergenic (‑59/‑69) |
tdcE/insH |
pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | W3110S.gb |
3262333 = |
0 (0.000) | coding (1183/1296 nt) |
tdcD |
propionate kinase/acetate kinase C, anaerobic |
GATK/CNVnator alignment
N/A
