Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,287,831 |
C→T |
41.6% |
L98L (CTG→TTG) |
argE → |
acetylornithine deacetylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,287,831 | 0 | C | T | 41.6%
| 49.6
/ 87.3
| 120 | L98L (CTG→TTG) | argE | acetylornithine deacetylase |
| Reads supporting (aligned to +/- strand): ref base C (35/35); new base T (30/20); total (65/55) |
| Fisher's exact test for biased strand distribution p-value = 3.53e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
Only 100 of 121 total aligned reads displayed.
GGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGTTTATCC > minE/2287774‑2287900
|
gggCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:3257407/69‑1 (MQ=255)
gggCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:2116588/69‑1 (MQ=255)
aTACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg < 1:96267/62‑1 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:591909/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:290533/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:282035/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2786214/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2657080/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:389125/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2314431/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:1939200/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:744708/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:770817/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:795270/1‑69 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:3336505/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:271395/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1935473/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2995223/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:3298319/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2598903/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:368109/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:559167/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:658918/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:710851/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:967607/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1297888/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1100472/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1210523/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGAAGGAGCATGACGGCAAGCtt < 1:2093092/69‑1 (MQ=255)
gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:2486725/1‑49 (MQ=255)
gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:2996019/1‑49 (MQ=255)
gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:1234201/1‑49 (MQ=255)
ccATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGc < 1:1706786/69‑1 (MQ=255)
ccATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGc < 1:2464681/69‑1 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAg > 1:816020/1‑44 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:635958/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:533846/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:507934/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:507753/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1235976/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:3319377/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:3196043/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1049989/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2829201/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2688668/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1022743/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1710545/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1709977/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1778256/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2102945/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2476565/1‑68 (MQ=255)
tgatgaCGGTCGCTGGCCGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:337147/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCGGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:1644540/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAGGCTTTACGGCTTAgg > 1:1960267/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:3255798/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:3033238/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:1388528/1‑69 (MQ=255)
gatgaCGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1251860/57‑1 (MQ=255)
gaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAcc < 1:3336398/69‑1 (MQ=255)
gaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAcc < 1:2224640/69‑1 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1664908/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1271417/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:3077656/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1107842/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:703527/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:2585773/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:2367339/1‑68 (MQ=255)
tCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGa < 1:1804441/69‑1 (MQ=255)
cTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1070510/46‑1 (MQ=255)
tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:1583236/69‑1 (MQ=255)
tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:478430/69‑1 (MQ=255)
tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:1104770/69‑1 (MQ=255)
tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:773036/69‑1 (MQ=255)
tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:2689933/69‑1 (MQ=255)
tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:1372866/69‑1 (MQ=255)
cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATTAAAGGc < 1:1450628/69‑1 (MQ=255)
cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2765179/69‑1 (MQ=255)
cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:1239639/69‑1 (MQ=255)
cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2405244/69‑1 (MQ=255)
cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2977992/69‑1 (MQ=255)
cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2074862/69‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2673158/68‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:900709/68‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:932949/68‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2276782/68‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2677160/68‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCt < 1:1992074/69‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCt < 1:1983589/69‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCt < 1:3121518/69‑1 (MQ=255)
gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTGTACGGCTTAGGCACCGCCGa < 1:1088301/58‑1 (MQ=255)
gATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCttt < 1:1622201/69‑1 (MQ=255)
gATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCttt < 1:1510214/69‑1 (MQ=255)
tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCgct > 1:2801907/1‑67 (MQ=255)
tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:1059002/1‑69 (MQ=255)
tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:2188600/1‑69 (MQ=255)
tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:833432/1‑69 (MQ=255)
tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:1475408/1‑69 (MQ=255)
tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:2070389/1‑69 (MQ=255)
tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:380282/1‑69 (MQ=255)
cTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTT‑CGTTTATcc > 1:2528984/1‑69 (MQ=255)
|
GGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGTTTATCC > minE/2287774‑2287900
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
