Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,784,005 |
T→C |
46.4% |
G359G (GGT→GGC) |
yjbB → |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,784,005 | 0 | T | C | 46.4%
| 11.2
/ 107.2
| 123 | G359G (GGT→GGC) | yjbB | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base T (40/26); new base C (29/28); total (69/54) |
| Fisher's exact test for biased strand distribution p-value = 3.62e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.22e-01 |
Only 100 of 123 total aligned reads displayed.
TGCGCATTGGCGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAGATGATATCAACGTTCTCTACACCGCC > minE/2783947‑2784068
|
tGCGCATTGGCGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGc > 1:2052988/1‑69 (MQ=255)
tGCGCATTGGCGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGc > 1:406689/1‑69 (MQ=255)
ggCGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGgaga > 1:3016212/1‑67 (MQ=255)
ggCGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGgaga > 1:2703075/1‑67 (MQ=255)
ggCGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGgaga > 1:1904561/1‑67 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:2671603/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:1768273/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:1656215/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:3204831/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:3246363/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:3281306/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:1945565/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:3374259/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:2861411/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:2316230/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:2442475/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:607964/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAaga > 1:2806577/1‑69 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGCGAGCCACGGCAGGAGAAag > 1:2803248/1‑68 (MQ=255)
cGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGAACGGCGAGCCACGGCAGGAGAAaga > 1:1934661/1‑69 (MQ=255)
gCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGc > 1:3104749/1‑49 (MQ=255)
gCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGc > 1:2858108/1‑49 (MQ=255)
gCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGc > 1:1017246/1‑49 (MQ=255)
gCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGc > 1:3182339/1‑49 (MQ=255)
gCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGc > 1:1162732/1‑49 (MQ=255)
gCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGc > 1:2454187/1‑49 (MQ=255)
gCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGc > 1:590801/1‑49 (MQ=255)
ggAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTaa > 1:1878713/1‑69 (MQ=255)
ggAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTaa > 1:1494664/1‑69 (MQ=255)
gAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAg > 1:2781316/1‑69 (MQ=255)
gAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAg > 1:1952970/1‑69 (MQ=255)
gAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAg > 1:10120/1‑69 (MQ=255)
gAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAg > 1:1652052/1‑69 (MQ=255)
cAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCt < 1:194600/68‑1 (MQ=255)
gatgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCt > 1:2411270/1‑54 (MQ=255)
gatgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAg > 1:2640849/1‑68 (MQ=255)
gatgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAg > 1:860648/1‑68 (MQ=255)
atgGAAGGTTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:2952630/69‑1 (MQ=255)
atgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:1690110/69‑1 (MQ=255)
atgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:1479816/69‑1 (MQ=255)
atgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:3349422/69‑1 (MQ=255)
atgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:2090541/69‑1 (MQ=255)
atgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:538622/69‑1 (MQ=255)
tgGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:684827/68‑1 (MQ=255)
ttGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:3141601/60‑1 (MQ=255)
ttGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:1088116/60‑1 (MQ=255)
ttGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:1147817/60‑1 (MQ=255)
ttGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:747652/60‑1 (MQ=255)
ttGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:1271774/60‑1 (MQ=255)
ttGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:2237428/60‑1 (MQ=255)
ttGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat > 1:1620055/1‑60 (MQ=255)
tGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgat < 1:2810312/59‑1 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:601003/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:342637/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:2919725/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:3417822/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:3125235/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:862378/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1013319/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1733073/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1834567/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1846991/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1498445/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1459657/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1372181/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:2191388/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1301031/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:2354822/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:2481027/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1170552/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1148610/53‑2 (MQ=255)
aTAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:2602781/53‑2 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:439524/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:3402541/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:1423860/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:1098427/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:2605233/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:1565660/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:267707/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:1717894/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:2532784/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:1614744/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:3014786/1‑68 (MQ=255)
tAAAGTGATGCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCTGATGACATCAACGTtc > 1:2062083/1‑68 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCt < 1:374262/46‑1 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCt < 1:2736724/46‑1 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCt < 1:1351949/46‑1 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCt < 1:3070061/46‑1 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCt < 1:3239747/46‑1 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGTCAGATGATATCAACGTtctc > 1:3300407/1‑68 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgattat < 1:1872340/56‑1 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAgatgat < 1:1227130/56‑1 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAGATGATATCAACGTtctc > 1:222515/1‑68 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAGATGATATCAACGTtctc > 1:1250453/1‑68 (MQ=255)
aaGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAGATGATATCAACGTtctc > 1:2784118/1‑68 (MQ=255)
tGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCt < 1:1301790/40‑1 (MQ=255)
gCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:2104976/43‑2 (MQ=255)
gCACGGCGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGct < 1:1351780/43‑2 (MQ=255)
cACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAGATGATATCAACGTTCTCTACACCGcc > 1:283356/1‑69 (MQ=255)
cACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAGATGATATCAACGTTCTCTACACCGcc > 1:3274937/1‑69 (MQ=255)
|
TGCGCATTGGCGACGCCATGGAACAGATGATGGAAGGGTTGAATAAAGTGATGCACGGTGAGCCACGGCAGGAGAAAGAGCTGCGTAAGCTGGCAGATGATATCAACGTTCTCTACACCGCC > minE/2783947‑2784068
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
