Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F52 I0 R1 129 152.3 7640533 93.0% 7105695 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,057,140 A→G 15.5% intergenic (‑191/+38) ibsC ← / ← serA toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,057,1400AG15.5% 494.2 / 69.9 204intergenic (‑191/+38)ibsC/serAtoxic membrane protein/D‑3‑phosphoglycerate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (85/87);  new base G (13/19);  total (98/106)
Fisher's exact test for biased strand distribution p-value = 4.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01

Only 100 of 206 total aligned reads displayed.

CAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTT  >  NC_000913/3057041‑3057239
                                                                                                    |                                                                                                   
caACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCaa                                                                                                     >  2:1904430/1‑100 (MQ=255)
 aaCGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAg                                                                                                    <  2:916043/100‑1 (MQ=255)
 aaCGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAg                                                                                                    <  2:577616/100‑1 (MQ=255)
  aCGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGt                                                                                                   >  2:487301/1‑100 (MQ=255)
     cATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAg                                                                                                >  1:481256/1‑100 (MQ=255)
     cATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAg                                                                                                >  1:3743005/1‑100 (MQ=255)
      aTTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGt                                                                                               <  2:2174276/100‑1 (MQ=255)
        tGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGa                                                                                             >  1:592738/1‑100 (MQ=255)
         gATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCGAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGAc                                                                                            >  2:2692636/1‑100 (MQ=255)
         gATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGAc                                                                                            >  2:742835/1‑100 (MQ=255)
         gATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGAc                                                                                            >  2:141881/1‑100 (MQ=255)
          aTCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGTGCAACGCGGCACCGGTGTGGAGAAGGGAT‑AAAAAAACGGGGAAGTCAGTGAc                                                                                            >  1:761665/1‑99 (MQ=255)
          aTCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGAcc                                                                                           <  1:1088567/100‑1 (MQ=255)
          aTCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGAcc                                                                                           <  1:1360729/100‑1 (MQ=255)
           tCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCt                                                                                          <  2:1999430/100‑1 (MQ=255)
            cTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTg                                                                                         >  2:1299934/1‑100 (MQ=255)
              gACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGcc                                                                                       <  2:3184292/100‑1 (MQ=255)
              gACTTTGATTTAGTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGcc                                                                                       <  1:1970852/100‑1 (MQ=255)
                cTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGagatcggaa                                                                                     >  1:3433369/1‑92 (MQ=255)
                cTTTGATTTATTTTCTGAAGCAGACACGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCg                                                                                     <  1:3591435/100‑1 (MQ=255)
                 tttGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGt                                                                                    <  1:3796474/100‑1 (MQ=39)
                    gATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGGGCAACGCGGCAACGGTCTGGAGAAGGGAT‑AAATCAACGGGCAAGTCAGTGACCTGCCCGTTGa                                                                                 <  1:650437/100‑1 (MQ=255)
                    gATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGa                                                                                 >  1:2986905/1‑100 (MQ=255)
                    gATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGa                                                                                 >  2:3449122/1‑100 (MQ=255)
                    gATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGa                                                                                 <  2:3686323/100‑1 (MQ=255)
                    gATTCATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGa                                                                                 <  2:2454340/100‑1 (MQ=255)
                     atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAt                                                                                >  1:2656940/1‑100 (MQ=255)
                     atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAt                                                                                >  2:500907/1‑100 (MQ=255)
                     atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGCCAGTGACCTGCCCGTTGa                                                                                 >  1:2555775/1‑99 (MQ=255)
                     atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACCGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAt                                                                                >  1:460425/1‑100 (MQ=255)
                     agttatttTCTGGAGAAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGttttt                                                                                <  1:79723/98‑4 (MQ=37)
                      tttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGtttttt                                                                               <  2:2338706/100‑5 (MQ=38)
                      tttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGtttttt                                                                               <  2:207077/100‑5 (MQ=38)
                      tttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAtt                                                                               <  1:2322926/100‑1 (MQ=255)
                       ttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGttttttt                                                                              <  2:3033289/100‑6 (MQ=37)
                       ttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGttttttt                                                                              <  1:3357659/100‑6 (MQ=37)
                       ttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAttt                                                                              <  2:3101760/100‑1 (MQ=255)
                       ttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAttt                                                                              <  2:3743054/100‑1 (MQ=255)
                         atttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTc                                                                            >  2:250991/1‑100 (MQ=255)
                         atttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTc                                                                            <  2:1037093/100‑1 (MQ=255)
                           tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGTGGCAACGGCGTGGAGAAGGGAT‑AAAAAAACGGGGAAGTCAGTGACCTGCCCGTTGAtcttacg                                                                          >  1:3673910/1‑97 (MQ=255)
                           tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGtttttttatcc                                                                          <  2:2931118/100‑10 (MQ=25)
                           tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAGGTCACTGACTTGCCCGtttttttatcc                                                                          <  2:2810305/100‑10 (MQ=25)
                           tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCag                                                                          <  2:652902/100‑1 (MQ=255)
                           tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCag                                                                          <  1:2773475/100‑1 (MQ=255)
                           tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCag                                                                          <  2:1349422/100‑1 (MQ=255)
                           tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGAAACGGTGTGGAGCAGGGAT‑AAACAAACGTGCAGGTCACTGACTTGCCCGtttttttatcc                                                                          <  1:2032610/100‑10 (MQ=25)
                             tCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCagc                                                                         <  1:630289/99‑2 (MQ=255)
                             tCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCagag                                                                        >  2:2762288/1‑100 (MQ=255)
                             tCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCagag                                                                        <  1:2947408/100‑1 (MQ=255)
                             tCTGGAGCAGACCCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAAAAAAAAA‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCaga                                                                         <  1:1243211/99‑1 (MQ=255)
                                 gAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAgg                                                                    >  1:1083150/1‑100 (MQ=255)
                                    cAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGa                                                                 <  2:3356796/100‑1 (MQ=255)
                                      gACTCGCGAAGTAGAATGCGCAACGCGGTAACGGTGGGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAgggg                                                                  <  2:3806029/97‑1 (MQ=255)
                                       aCTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAAtt                                                              <  2:1846707/100‑1 (MQ=255)
                                         tggCAAAGTAGAATGCGCAACGCGGCAACGGTGTGAAAAAGGGAA‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAg                                                            <  1:537282/98‑1 (MQ=255)
                                         tCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAg                                                            <  2:547573/100‑1 (MQ=255)
                                            cAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTaa                                                         >  2:2107893/1‑99 (MQ=255)
                                             aaaGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAc                                                         >  2:1106125/1‑100 (MQ=255)
                                             aaaGTAGAATGAGCAACGCGGCAACGGTGTGGAAAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAca                                                        <  1:980679/100‑1 (MQ=255)
                                               aGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcagc                                                      <  1:2166190/100‑1 (MQ=255)
                                                gTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcagca                                                     <  2:4253/100‑1 (MQ=255)
                                                gTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcagca                                                     <  2:1192306/100‑1 (MQ=255)
                                                gTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcagca                                                     >  2:2991454/1‑100 (MQ=255)
                                                  aGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGa                                                   >  1:637316/1‑100 (MQ=255)
                                                     aTGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGCAGGGGAATTAGTACAGCAGACg                                                 >  2:1649858/1‑99 (MQ=255)
                                                      tGCGCAACGCGGCAACCGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACggg                                               <  2:460527/100‑1 (MQ=255)
                                                              gcgGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATg                                       >  2:726671/1‑100 (MQ=255)
                                                               cgGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTCACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATgg                                      <  1:2447939/100‑1 (MQ=255)
                                                                 gCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTa                                    >  2:1784415/1‑100 (MQ=255)
                                                                  cAACGGTGTGGAGAAGGGATAAAAAAAACGGGAAATCCGGTGCCTTGCCGGTTGATTTCCGGGGAAGGGGAATAGTTACAGCAAACggcgcggattg                                       >  2:1576339/1‑88 (MQ=255)
                                                                  cAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTAc                                   >  2:2410089/1‑100 (MQ=255)
                                                                      ggTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCgg                               <  2:674123/100‑1 (MQ=255)
                                                                           ggAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAGTGGTACCCgg                               >  1:1621101/1‑95 (MQ=255)
                                                                            gagaAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGc                         <  2:363768/100‑1 (MQ=255)
                                                                             agaAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGTGCGAATGGTACCCGGAATAGCt                        >  1:3460803/1‑100 (MQ=255)
                                                                             agaAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCt                        >  2:3287397/1‑100 (MQ=255)
                                                                              gaAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCtt                       <  1:1174668/100‑1 (MQ=255)
                                                                              gaAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCtt                       <  1:3123181/100‑1 (MQ=255)
                                                                               aaGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCttt                      <  1:1846009/100‑1 (MQ=255)
                                                                                  ggAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCAt                   >  1:685626/1‑100 (MQ=255)
                                                                                  ggAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCAt                   <  2:1990642/100‑1 (MQ=255)
                                                                                   gAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTGAGAGAAGGGGAATTAGTACGGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCAtt                  >  1:2073300/1‑100 (MQ=255)
                                                                                    aT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTg                 <  1:789719/100‑1 (MQ=255)
                                                                                       aaaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGcc               >  2:1631337/1‑100 (MQ=255)
                                                                                       aaaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGcc               <  2:1958502/100‑1 (MQ=255)
                                                                                       aaaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGcc               >  1:510352/1‑100 (MQ=255)
                                                                                       aaaaaaaCGGGCAAGTCAGTGACCTGCCCGGTGATTTGCAAAGAAGGGGAATGATTACTGCAGACGGCCTCGAAGGGTGCCCTCAATATCGGTCAGTGcc               >  1:3182050/1‑100 (MQ=255)
                                                                                        aaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCt              >  1:1474651/1‑100 (MQ=255)
                                                                                        aaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCt              <  2:1069670/100‑1 (MQ=255)
                                                                                          tcaaCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGACGGGGAATTAGTACAGAAGACGGGCGCAAATGGAACCCGGAATAGCTTTCATCACCTg             >  1:3730336/3‑99 (MQ=25)
                                                                                          tcaaCGGGCAGGTAAATGACTTGCCCGTTGATTTTAAGAGAAGAGGAATTAATACAGCAGACGATCTCGAATGGTACTCGGAATAGCTTTAAtttc                >  1:2233676/3‑94 (MQ=255)
                                                                                          aaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGc            <  2:2718148/100‑1 (MQ=255)
                                                                                          aaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGc            >  1:3645112/1‑100 (MQ=255)
                                                                                             aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTCCAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc         >  1:3282607/1‑100 (MQ=38)
                                                                                             aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc         >  2:2872442/1‑100 (MQ=39)
                                                                                             aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc         >  2:1393675/1‑100 (MQ=39)
                                                                                              cGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc         >  1:1661945/1‑99 (MQ=255)
                                                                                               gggCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgcgc       >  2:3573787/1‑100 (MQ=255)
                                                                                                ggCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCt      >  1:1887357/1‑100 (MQ=255)
                                                                                                    |                                                                                                   
CAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGAT‑AAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTT  >  NC_000913/3057041‑3057239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A