Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F55 I0 R1 245 145.6 7293262 93.0% 6782733 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,078,996 G→T 100% intergenic (+558/‑301) yiiD → / → yiiE GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,078,9960GT100.0% 438.0 / NA 124intergenic (+558/‑301)yiiD/yiiEGNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (61/63);  total (61/63)

Only 100 of 124 total aligned reads displayed.

GAAAAACAACTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATA  >  NC_000913/4078903‑4079090
                                                                                             |                                                                                              
 aaaaaCAACTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAAtt                                                                                         >  1:1772788/1‑100 (MQ=255)
 aaaaaCAACTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAAtt                                                                                         <  1:1380472/100‑1 (MQ=255)
 aaaaaCAACTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAAtt                                                                                         >  1:1772671/1‑100 (MQ=255)
   aaaCAACTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTc                                                                                       <  1:1334171/100‑1 (MQ=255)
    aacaacTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCa                                                                                      <  1:1060114/100‑1 (MQ=255)
    aacaacTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCa                                                                                      <  2:1256226/100‑1 (MQ=255)
     acaacTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCAc                                                                                     >  2:830226/1‑100 (MQ=255)
     acaacTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCAc                                                                                     <  1:2416734/100‑1 (MQ=255)
        acTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCtt                                                                                  >  2:3110565/1‑100 (MQ=255)
         cTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTa                                                                                 <  1:404745/100‑1 (MQ=255)
         cTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTa                                                                                 >  2:1871800/1‑100 (MQ=255)
         cTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTa                                                                                 >  2:2770677/1‑100 (MQ=255)
           ttCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTaaa                                                                               >  1:1897398/1‑100 (MQ=255)
            tCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAAt                                                                              <  2:3360425/100‑1 (MQ=255)
              ccGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATcc                                                                            >  1:3059299/1‑100 (MQ=255)
              ccGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATcc                                                                            >  2:387522/1‑100 (MQ=255)
              ccGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTATGTGATGAAATATTAATTACAACTTaa                                                                                >  2:3317814/1‑96 (MQ=255)
                gAACTGTTACCAACAAAATTATAACCATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTg                                                                          <  2:1725170/100‑1 (MQ=255)
                 aaCTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCtag                                                                         <  1:2442735/100‑3 (MQ=255)
                  aCTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGCTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATcc                                                                            <  2:658253/96‑1 (MQ=255)
                    tGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGc                                                                      <  1:1198472/100‑1 (MQ=255)
                     gTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGc                                                                      >  2:833381/1‑99 (MQ=255)
                     gTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCt                                                                     >  1:1677570/1‑100 (MQ=255)
                      ttACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGCGATGAAATATTAATTTCACCTTAAATCCTGGTGCTg                                                                    <  1:2566591/100‑1 (MQ=255)
                       tACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGt                                                                   <  1:442932/100‑1 (MQ=255)
                        aCCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGtt                                                                  <  1:1371490/100‑1 (MQ=255)
                        aCCAACAAAATTATAACGATGAGCAAGTAAAGACCAGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGtt                                                                  >  2:3213562/1‑100 (MQ=255)
                          caacaaAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAg                                                                >  2:2573856/1‑100 (MQ=255)
                          caacaaAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAg                                                                >  2:581215/1‑100 (MQ=255)
                          caacaaAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAg                                                                <  2:2856137/100‑1 (MQ=255)
                            acaaAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGa                                                              >  1:2427067/1‑100 (MQ=255)
                            acaaAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGa                                                              >  1:2863885/1‑100 (MQ=255)
                              aaaaTTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATg                                                            <  1:2964996/100‑1 (MQ=255)
                              aaaaTTATAACGATGAGCAAGTAAAGACCGGTTGGGGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATg                                                            <  1:2026601/100‑1 (MQ=255)
                               aaaTTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGc                                                           <  2:2959678/100‑1 (MQ=255)
                               aaaTTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGc                                                           <  1:557662/100‑1 (MQ=255)
                                aaTTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCt                                                          <  2:188829/100‑1 (MQ=255)
                                  ttATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGa                                                        <  1:1120191/100‑1 (MQ=255)
                                  ttATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGa                                                        >  1:365974/1‑100 (MQ=255)
                                   tataACGATGAGCAAGTAAAGACCGGTTGGTAGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGAc                                                       >  2:448537/1‑100 (MQ=255)
                                    ataACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACg                                                      >  1:1547300/1‑100 (MQ=255)
                                     taACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGt                                                     >  1:3545911/1‑100 (MQ=255)
                                       aCGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGttt                                                   >  2:1932903/1‑100 (MQ=255)
                                       aCGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGttt                                                   >  2:2721801/1‑100 (MQ=255)
                                         gATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGttttt                                                 <  1:272522/100‑1 (MQ=255)
                                          aTGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTc                                                <  2:2914110/100‑1 (MQ=255)
                                           tGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCg                                               <  1:723604/100‑1 (MQ=255)
                                           tGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCg                                               >  1:3518226/1‑100 (MQ=255)
                                            gAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCgg                                              <  1:1871809/100‑1 (MQ=255)
                                            gAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCgg                                              <  1:620137/100‑1 (MQ=255)
                                             aGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGc                                             <  2:2682378/100‑1 (MQ=255)
                                             aGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGc                                             >  2:1957487/1‑100 (MQ=255)
                                              gCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCt                                            <  1:2349590/100‑1 (MQ=255)
                                              gCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCt                                            <  1:1123807/100‑1 (MQ=255)
                                              gCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCt                                            >  1:2430373/1‑100 (MQ=255)
                                              gCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGATGACGTTTTTcaact                                            >  1:3241308/1‑96 (MQ=255)
                                                gaGTATAGACCTGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTGCACCTTCAAGCCTGGAGCTGTTAGGATGCTGCCGTTTTCCGGcca                                           <  2:2213010/98‑3 (MQ=255)
                                                 aGTAAAGACCGGTCGGTGGCAGTACTGACCGCTCTGTGATGAAATATTAATTTCACCTTAAACCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTaca                                         <  2:71249/100‑1 (MQ=255)
                                                  gTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTacac                                        <  2:2038950/100‑1 (MQ=255)
                                                  gTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTacac                                        >  1:317249/1‑100 (MQ=255)
                                                     aaGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCAt                                     >  1:214029/1‑100 (MQ=255)
                                                     aaGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCAt                                     >  1:754801/1‑100 (MQ=255)
                                                       gACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTAGACCATTc                                   <  1:1911306/100‑1 (MQ=255)
                                                       gACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTc                                   >  2:3139178/1‑100 (MQ=255)
                                                       gACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTc                                   <  1:3498037/100‑1 (MQ=255)
                                                         ccGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAg                                 >  1:690864/1‑100 (MQ=255)
                                                         ccGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAg                                 <  2:2427051/100‑1 (MQ=255)
                                                         ccGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAg                                 >  1:1136925/1‑100 (MQ=255)
                                                           ggTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGAt                               >  2:2387671/1‑100 (MQ=255)
                                                           ggTTGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGATGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGAt                               <  2:499149/100‑1 (MQ=255)
                                                           ggTTGGTAGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGAt                               <  1:448539/100‑1 (MQ=255)
                                                             ttGGTGGCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTa                             <  2:362830/100‑1 (MQ=255)
                                                              tggtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTAt                            <  1:246586/100‑1 (MQ=255)
                                                              tggtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTAt                            <  2:2439545/100‑1 (MQ=255)
                                                               ggtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATg                           >  1:521051/1‑100 (MQ=255)
                                                               ggtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATg                           >  1:2959929/1‑100 (MQ=255)
                                                               ggtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATg                           >  2:2368452/1‑100 (MQ=255)
                                                                gtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGc                          >  2:1526671/1‑100 (MQ=255)
                                                                gtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGc                          <  1:829266/100‑1 (MQ=255)
                                                                gtggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGc                          <  1:1160367/100‑1 (MQ=255)
                                                                gtggCAGTACTGACCGGTCTGTGATGAAATATTAATCTCACCTTAAATACTGGTGCTGTTAGGATGCTGAAGTTTTTCGGCTACACCATTCAGATTATGc                          <  2:353343/100‑1 (MQ=255)
                                                                  ggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCaa                        <  1:1348048/100‑1 (MQ=255)
                                                                  ggCAGTACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCaa                        >  2:2094768/1‑100 (MQ=255)
                                                                       tACTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCaaataaa                   <  2:253837/100‑1 (MQ=255)
                                                                        aCTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCaaataaat                  >  1:2706900/1‑100 (MQ=255)
                                                                        aCTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCaaataaat                  >  1:523346/1‑100 (MQ=255)
                                                                        aCTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCaaataaat                  <  1:2586861/100‑1 (MQ=255)
                                                                         cTGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAaataaata                 >  2:2795775/1‑100 (MQ=255)
                                                                          tGACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAatat                >  1:1368592/1‑100 (MQ=255)
                                                                           gACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATAtc               >  2:1905774/1‑100 (MQ=255)
                                                                           gACCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATAtc               >  1:959906/1‑100 (MQ=255)
                                                                            aCCGGTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATAtct              <  1:603383/100‑1 (MQ=255)
                                                                               ggTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTg           <  1:939490/100‑1 (MQ=255)
                                                                               ggTCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTAAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTg           <  2:548441/100‑1 (MQ=255)
                                                                                 tCTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGaa         <  1:1618521/100‑1 (MQ=255)
                                                                                  cTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGaat        <  1:2534525/100‑1 (MQ=255)
                                                                                  cTGTGATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGaat        <  1:3443055/100‑1 (MQ=255)
                                                                                   tgtgATGAAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGaa         <  2:1307686/98‑1 (MQ=255)
                                                                                      gatgaAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGaatataa    >  1:2401692/1‑100 (MQ=255)
                                                                                       atgaAATATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGaatataat   >  1:3615804/1‑100 (MQ=255)
                                                                                             |                                                                                              
GAAAAACAACTTTCCCGAACTGTTACCAACAAAATTATAACGATGAGCAAGTAAAGACCGGTTGGTGGCAGTACTGACCGGTCTGTGATGAAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATA  >  NC_000913/4078903‑4079090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A