mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 78,830 | T→A | 18.1% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 17.8% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 120,154 | Δ1 bp | 15.1% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 15.8% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 207,483 | A→C | 17.9% | V786V (GTA→GTC) | dnaE → | DNA polymerase III alpha subunit |
| RA | 207,486 | G→T | 16.8% | M787I (ATG→ATT) | dnaE → | DNA polymerase III alpha subunit |
| RA | 238,141 | G→A | 16.1% | intergenic (+21/+116) | yafT → / ← ykfM | lipoprotein/lethality reduction protein, putative inner membrane protein |
| RA | 238,146 | T→C | 15.5% | intergenic (+26/+111) | yafT → / ← ykfM | lipoprotein/lethality reduction protein, putative inner membrane protein |
| RA | 252,589 | G→C | 17.5% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 17.3% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 254,223 | A→T | 19.7% | intergenic (+21/+36) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,228 | A→T | 18.8% | intergenic (+26/+31) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,233 | A→T | 18.3% | intergenic (+31/+26) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,238 | A→T | 18.0% | intergenic (+36/+21) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 256,449 | T→C | 16.5% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 17.3% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 16.2% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 260,537 | G→C | 15.1% | S50S (TCG→TCC) | proB → | gamma‑glutamate kinase |
| RA | 260,541:1 | +G | 15.3% | coding (154/1104 nt) | proB → | gamma‑glutamate kinase |
| RA | 317,566 | G→A | 17.5% | pseudogene (128/129 nt) | ykgQ → | pseudogene, putative dehydrogenase |
| RA | 317,571 | T→C | 16.8% | intergenic (+4/+155) | ykgQ → / ← rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein |
| RA | 335,166 | T→A | 18.4% | intergenic (‑144/‑114) | yahC ← / → yahD | putative inner membrane protein/ankyrin repeat protein |
| RA | 371,064 | C→G | 16.0% | A263G (GCC→GGC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 371,067 | T→A | 15.5% | I264N (ATT→AAT) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 371,070 | C→G | 15.1% | A265G (GCC→GGC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 401,542 | G→T | 76.8% | E53* (GAG→TAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
| RA | 478,750 | C→T | 15.0% | intergenic (‑133/+31) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,757 | T→C | 15.7% | intergenic (‑140/+24) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,759 | A→G | 15.0% | intergenic (‑142/+22) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 594,946 | C→A | 15.8% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 15.1% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 603,393 | T→A | 15.0% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 15.2% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 657,531 | T→G | 15.2% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 681,694 | A→G | 15.1% | intergenic (+31/+29) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 770,679 | G→T | 16.4% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 16.5% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 824,572 | T→A | 17.0% | intergenic (‑75/‑58) | ybhP ← / → ybhQ | endo/exonuclease/phosphatase family protein/inner membrane protein |
| RA | 824,573 | T→A | 16.8% | intergenic (‑76/‑57) | ybhP ← / → ybhQ | endo/exonuclease/phosphatase family protein/inner membrane protein |
| RA | 843,749 | C→A | 100% | D578Y (GAT→TAT) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 850,995 | T→G | 15.2% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 15.0% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 15.1% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 866,393 | A→T | 15.1% | intergenic (‑29/‑175) | moeA ← / → iaaA | molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein/Isoaspartyl peptidase |
| RA | 922,316:1 | +C | 18.2% | intergenic (+23/+50) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 940,751 | T→C | 15.7% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 1,004,741 | T→G | 15.3% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,157,629 | G→C | 15.9% | intergenic (+55/‑240) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,157,632 | A→T | 15.3% | intergenic (+58/‑237) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,157,636 | G→C | 15.1% | intergenic (+62/‑233) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,177,647 | C→A | 15.1% | L110I (CTT→ATT) | lolE → | lipoprotein‑releasing system transmembrane protein |
| RA | 1,187,090 | G→C | 17.4% | intergenic (+20/+29) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,187,091 | T→A | 17.1% | intergenic (+21/+28) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,187,092 | G→C | 17.5% | intergenic (+22/+27) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,211,610 | A→G | 15.3% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 15.6% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 15.4% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,224,239 | A→T | 16.5% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 16.0% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,232,481 | C→T | 18.3% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 18.4% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,311,830 | A→G | 16.3% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 15.0% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,322,394 | C→G | 15.5% | D185H (GAC→CAC) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,396 | A→T | 16.0% | I184N (ATT→AAT) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,398 | C→G | 15.9% | V183V (GTG→GTC) | trpE ← | component I of anthranilate synthase |
| RA | 1,327,213 | C→T | 15.1% | T121I (ACC→ATC) | rluB → | 23S rRNA pseudouridine(2605) synthase |
| RA | 1,357,224 | G→A | 16.4% | intergenic (‑114/+199) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,357,227 | A→G | 16.3% | intergenic (‑117/+196) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,357,230 | T→A | 16.3% | intergenic (‑120/+193) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,357,233 | C→T | 15.1% | intergenic (‑123/+190) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,388,285 | A→G | 15.1% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,408,537 | A→T | 15.7% | E163V (GAG→GTG) | ydaN → | putative Zn(II) transporter |
| RA | 1,446,357:1 | +T | 16.3% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,446,362 | Δ1 bp | 17.7% | intergenic (+156/+16) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,499,361 | A→G | 18.9% | N142D (AAC→GAC) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,365 | A→T | 19.2% | Q143L (CAG→CTG) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,369 | C→T | 19.6% | V144V (GTC→GTT) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,520,080 | G→T | 16.1% | intergenic (+16/‑182) | curA → / → mcbR | curcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,520,083 | A→C | 16.1% | intergenic (+19/‑179) | curA → / → mcbR | curcumin/dihydrocurcumin reductase, NADPH‑dependent/colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,579,563 | G→T | 15.5% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 15.9% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,602,236 | A→T | 16.8% | Q249H (CAA→CAT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,602,239 | A→T | 16.8% | K250N (AAA→AAT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,642,370 | C→G | 16.0% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 16.0% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,666,466 | T→G | 18.0% | Y384* (TAT→TAG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,666,468 | A→T | 18.2% | Q385L (CAG→CTG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,666,470 | C→A | 18.0% | L386I (CTA→ATA) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,674,955 | A→T | 16.5% | intergenic (+8/+17) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,674,958 | A→T | 16.2% | intergenic (+11/+14) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,703,251 | A→T | 16.2% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 16.2% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,736,097 | T→A | 18.2% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 17.6% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,756,529 | A→T | 100% | T278S (ACC→TCC) | pykF → | pyruvate kinase I |
| RA | 1,850,715 | Δ1 bp | 15.8% | intergenic (+22/‑145) | sppA → / → ansA | protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1 |
| RA | 1,850,719:1 | +T | 16.5% | intergenic (+26/‑141) | sppA → / → ansA | protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1 |
| RA | 1,856,333 | T→G | 17.6% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 17.4% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,865,682 | G→C | 15.4% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,892,358 | C→T | 15.3% | G293D (GGT→GAT) | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,892,363 | A→G | 15.4% | Y291Y (TAT→TAC) | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,910,295 | A→T | 17.1% | D7V (GAC→GTC) | yebQ → | putative transporter |
| RA | 1,926,882 | C→A | 16.4% | G653V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,926,888 | C→A | 16.4% | G651V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,926,891 | G→C | 15.9% | S650* (TCA→TGA) | ptrB ← | protease II |
| RA | 1,926,894 | T→G | 15.9% | D649A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,950,955 | Δ1 bp | 16.7% | coding (124/567 nt) | yecD → | isochorismatase family protein |
| RA | 1,950,966:1 | +C | 16.3% | coding (135/567 nt) | yecD → | isochorismatase family protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,028,158 | G→C | 17.9% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 17.9% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 18.0% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,033,723 | G→C | 15.6% | intergenic (‑239/‑328) | yedR ← / → yedS | inner membrane protein/pseudogene, outer membrane protein homology; putative outer membrane protein |
| RA | 2,140,400 | G→A | 20.5% | R405W (CGG→TGG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,140,401 | T→C | 20.6% | P404P (CCA→CCG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,151,969 | T→A | 17.5% | R168S (AGA→AGT) | yegK ← | ser/thr phosphatase‑related protein |
| RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,332 | C→T | 15.0% | intergenic (‑128/+180) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,255,991 | A→T | 16.8% | K213* (AAA→TAA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,255,992 | A→T | 16.8% | K213I (AAA→ATA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,286,139 | A→T | 17.8% | intergenic (+3/‑72) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,286,142 | T→A | 17.8% | intergenic (+6/‑69) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,286,145 | A→T | 17.0% | intergenic (+9/‑66) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,286,311 | C→G | 19.9% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 19.4% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 20.2% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,312,170 | G→C | 17.7% | L194V (CTG→GTG) | ompC ← | outer membrane porin protein C |
| RA | 2,356,737 | T→C | 15.4% | intergenic (+26/‑167) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,364,995 | T→G | 16.3% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 15.4% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,367,637 | T→G | 18.3% | N189K (AAT→AAG) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,367,640 | C→A | 17.6% | I190I (ATC→ATA) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,390,012 | Δ1 bp | 16.1% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 16.5% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,421,437 | T→C | 100% | I38T (ATC→ACC) | folX → | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| RA | 2,449,615 | C→G | 16.6% | G145G (GGG→GGC) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,616 | C→G | 17.2% | G145A (GGG→GCG) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,624 | Δ1 bp | 15.3% | coding (426/822 nt) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,519,222 | T→G | 17.7% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 18.1% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,228 | C→A | 18.0% | intergenic (+23/+29) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,537,076 | C→G | 16.3% | L54L (CTG→CTC) | pdxK ← | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| RA | 2,673,783 | G→A | 15.6% | intergenic (+15/+33) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,784 | C→A | 15.1% | intergenic (+16/+32) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,797 | T→G | 15.1% | intergenic (+29/+19) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,798 | T→C | 15.2% | intergenic (+30/+18) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,707,321 | A→T | 15.0% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,724,095 | C→A | 16.6% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 16.5% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 15.9% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,750,720 | C→T | 100% | intergenic (‑12/‑111) | grpE ← / → nadK | heat shock protein/NAD kinase |
| RA | 2,767,667 | T→G | 15.9% | intergenic (+312/‑43) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,767,670 | C→A | 15.2% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,772,226 | C→T | 15.1% | pseudogene (841/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,772,227 | A→T | 15.0% | pseudogene (840/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
| RA | 2,810,759 | G→A | 100% | intergenic (+80/‑11) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,872 | C→T | 17.4% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 17.6% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,980,742 | A→G | 18.6% | intergenic (‑107/+22) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,744 | A→T | 18.2% | intergenic (‑109/+20) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,746 | C→T | 19.2% | intergenic (‑111/+18) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,991,805:1 | +T | 15.0% | intergenic (+46/‑289) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
| RA | 2,991,805:2 | +G | 15.0% | intergenic (+46/‑289) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
| RA | 2,993,889 | T→A | 18.8% | intergenic (+33/‑50) | ygeI → / → pbl | uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family |
| RA | 3,111,961 | T→C | 15.1% | pseudogene (130/963 nt) | yghE ← | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| RA | 3,156,590 | C→A | 20.1% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 19.4% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,182,803 | T→G | 15.5% | L85W (TTG→TGG) | zupT → | zinc transporter |
| RA | 3,182,806 | C→A | 16.2% | P86Q (CCA→CAA) | zupT → | zinc transporter |
| RA | 3,183,345:1 | +T | 18.3% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 17.5% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,202,685 | A→G | 18.1% | E265E (GAA→GAG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,686 | C→T | 17.8% | L266F (CTC→TTC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,693 | C→G | 15.8% | P268R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,233,921 | T→C | 15.8% | Q75R (CAA→CGA) ‡ | higA ← | antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,233,922 | G→A | 15.3% | Q75* (CAA→TAA) ‡ | higA ← | antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,332,823 | T→C | 15.2% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,354,537 | C→G | 15.2% | intergenic (‑487/‑188) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
| RA | 3,379,266:1 | (C)7→8 | 100% | coding (732/1128 nt) | zapE ← | divisome ATPase |
| RA | 3,427,065:1 | +A | 100% | intergenic (‑32/+11) | alaU ← / ← ileU | tRNA‑Ala/tRNA‑Ile |
| RA | 3,427,068 | Δ1 bp | 100% | intergenic (‑35/+8) | alaU ← / ← ileU | tRNA‑Ala/tRNA‑Ile |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,705,970 | G→A | 29.2% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,971 | C→A | 29.6% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,984 | T→G | 41.3% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,985 | T→C | 41.4% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,017 | C→T | 30.8% | intergenic (‑227/+81) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,714,163:1 | +T | 16.4% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 16.0% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,790,300 | A→T | 15.3% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,798,235 | A→T | 15.5% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,832,188 | A→T | 17.6% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,191 | C→G | 17.7% | intergenic (+25/+28) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,194 | A→T | 17.8% | intergenic (+28/+25) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,888,213 | Δ1 bp | 15.2% | intergenic (+21/‑222) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,219 | T→A | 16.2% | intergenic (+27/‑216) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,225:1 | +A | 15.4% | intergenic (+33/‑210) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,918,291 | C→T | 15.4% | intergenic (‑26/+25) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,296 | C→T | 16.0% | intergenic (‑31/+20) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,299 | A→G | 15.7% | intergenic (‑34/+17) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,920,796 | T→C | 19.8% | A31A (GCA→GCG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,920,809 | G→A | 20.0% | P27L (CCG→CTG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,946,689 | G→A | 33.8% | intergenic (+82/‑11) | rrlC → / → rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| RA | 3,946,711 | C→A | 15.4% | noncoding (12/120 nt) | rrfC → | 5S ribosomal RNA of rrnC operon |
| RA | 4,049,986 | G→T | 15.8% | intergenic (+234/+147) | polA → / ← yihA | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/cell division GTP‑binding protein |
| RA | 4,051,259 | G→T | 16.6% | intergenic (‑494/‑88) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
| RA | 4,051,262 | A→C | 16.3% | intergenic (‑497/‑85) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
| RA | 4,072,171 | C→A | 100% | V161F (GTC→TTC) | yihT ← | 6‑deoxy‑6‑sulphofructose‑1‑phosphate aldolase |
| RA | 4,078,996 | G→T | 100% | intergenic (+558/‑301) | yiiD → / → yiiE | GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator |
| RA | 4,110,719 | G→C | 17.1% | intergenic (+34/+21) | cdh → / ← tpiA | CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase |
| RA | 4,110,721 | A→T | 17.7% | intergenic (+36/+19) | cdh → / ← tpiA | CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase |
| RA | 4,122,367 | (G)7→6 | 100% | intergenic (‑80/+13) | hslV ← / ← ftsN | peptidase component of the HslUV protease/essential cell division protein |
| RA | 4,148,049 | C→G | 16.7% | G90A (GGC→GCC) | yijO ← | AraC family putative transcriptional activator |
| RA | 4,177,171 | T→A | 22.9% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 22.7% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,189,448 | C→T | 100% | Q1367* (CAG→TAG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,223,854 | T→C | 15.4% | R9R (CGT→CGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,223,855 | G→A | 15.1% | A10T (GCG→ACG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,261,349 | G→A | 16.9% | intergenic (+43/‑320) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,358 | T→A | 18.3% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 17.5% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,265,670 | T→G | 15.0% | F453V (TTT→GTT) | dnaB → | replicative DNA helicase |
| RA | 4,296,060 | C→T | 23.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,312,074 | C→T | 17.6% | intergenic (‑32/+27) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,080 | G→C | 17.6% | intergenic (‑38/+21) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 17.5% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 16.8% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,332,868 | G→T | 16.2% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 15.5% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,376,280 | G→A | 15.6% | intergenic (+15/‑37) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,470,951 | A→C | 17.1% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,952 | T→C | 17.1% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,957 | G→A | 16.2% | intergenic (‑44/+29) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,958 | G→T | 16.8% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,496,312 | A→T | 16.8% | intergenic (‑103/‑93) | ahr ← / → leuX | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/tRNA‑Leu |
| RA | 4,520,500 | Δ1 bp | 18.1% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 17.5% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 15.7% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 15.1% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,551,422 | T→A | 17.2% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423699–3424234 | 3424606–3424238 | 5–908 | 87 [82] | [84] 86 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 20191 = | NA (NA) | 11 (0.090) | 6/172 | NT | NA | noncoding (373/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 20219 = | NA (NA) | noncoding (345/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 117721 | 105 (0.810) | 22 (0.190) | 10/162 | NT | 17.6% | intergenic (‑172/+31) | ppdD/nadC | putative prepilin peptidase‑dependent pilin/quinolinate phosphoribosyltransferase |
| ? | NC_000913 | = 117731 | 111 (0.940) | intergenic (‑182/+21) | ppdD/nadC | putative prepilin peptidase‑dependent pilin/quinolinate phosphoribosyltransferase | |||||
| * | ? | NC_000913 | 224059 = | NA (NA) | 66 (0.550) | 13/164 | NT | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 49 (0.400) | 22/168 | NT | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225408 = | NA (NA) | 26 (0.210) | 13/168 | NT | NA | noncoding (28/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 225425 = | NA (NA) | noncoding (45/77 nt) | ileV | tRNA‑Ile | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 33 (0.270) | 17/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 37 (0.300) | 12/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 57 (0.480) | 15/164 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 21 (0.170) | 9/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 100 (0.850) | 64/162 | NT | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
| * | ? | NC_000913 | = 270756 | NA (NA) | 8 (0.070) | 4/168 | NT | NA | noncoding (216/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 270770 | NA (NA) | noncoding (230/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 30 (0.250) | 13/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 23 (0.180) | 8/172 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 18 (0.160) | 9/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 16 (0.130) | 8/170 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274965 = | NA (NA) | 32 (0.260) | 12/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 277706 | NA (NA) | 17 (0.140) | 6/164 | NT | NA | noncoding (32/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 277737 | NA (NA) | noncoding (63/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 26 (0.230) | 8/158 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 38 (0.310) | 13/170 | NT | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315991 = | NA (NA) | 19 (0.150) | 12/170 | NT | NA | noncoding (763/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 316014 = | NA (NA) | noncoding (786/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 24 (0.210) | 9/160 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 349852 | 114 (0.880) | 27 (0.230) | 9/164 | NT | 19.8% | noncoding (248/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349869 | 114 (0.960) | noncoding (265/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 361887 = | NA (NA) | 16 (0.130) | 9/164 | NT | NA | noncoding (5/34 nt) | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 361917 = | NA (NA) | intergenic (‑57/+9) | lacA/lacY | thiogalactoside acetyltransferase/lactose permease | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 33 (0.280) | 15/164 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 58 (0.490) | 14/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381819 = | NA (NA) | 41 (0.340) | 12/164 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381841 = | NA (NA) | noncoding (582/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381910 | NA (NA) | 55 (0.460) | 13/166 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382237 = | NA (NA) | 11 (0.090) | 7/166 | NT | NA | noncoding (978/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382267 = | NA (NA) | noncoding (1008/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 28 (0.230) | 10/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 411078 = | NA (NA) | 12 (0.100) | 7/164 | NT | NA | noncoding (1/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 411111 = | NA (NA) | noncoding (34/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 580768 | 94 (0.730) | 15 (0.140) | 7/146 | NT | 15.5% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 87 (0.820) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | = 591865 | 116 (0.900) | 21 (0.180) | 10/162 | NT | 15.8% | coding (1314/2238 nt) | nfrB | bacteriophage N4 receptor, inner membrane subunit |
| ? | NC_000913 | = 591878 | 118 (1.000) | coding (1301/2238 nt) | nfrB | bacteriophage N4 receptor, inner membrane subunit | |||||
| * | ? | NC_000913 | 707773 = | NA (NA) | 15 (0.130) | 8/160 | NT | NA | noncoding (4/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 707805 = | NA (NA) | noncoding (36/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 729981 = | NA (NA) | 7 (0.060) | 12/168 | NT | NA | coding (399/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 730006 = | NA (NA) | coding (424/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 746167 | 106 (0.820) | 18 (0.150) | 9/162 | NT | 15.3% | coding (233/792 nt) | nei | endonuclease VIII and 5‑formyluracil/5‑hydroxymethyluracil DNA glycosylase |
| ? | NC_000913 | = 746189 | 103 (0.880) | coding (255/792 nt) | nei | endonuclease VIII and 5‑formyluracil/5‑hydroxymethyluracil DNA glycosylase | |||||
| * | ? | NC_000913 | 780398 = | 120 (0.930) | 21 (0.190) | 9/154 | NT | 17.2% | intergenic (+9/‑156) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | NC_000913 | 780432 = | 98 (0.880) | intergenic (+43/‑122) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys | |||||
| * | ? | NC_000913 | 805804 = | NA (NA) | 15 (0.130) | 7/164 | NT | NA | noncoding (1/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 805836 = | NA (NA) | noncoding (33/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 815643 | NA (NA) | 10 (0.080) | 9/166 | NT | NA | noncoding (59/97 nt) | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 815689 | NA (NA) | intergenic (+142/+50) | uvrB/ybhK | exision nuclease of nucleotide excision repair, DNA damage recognition component/putative CofD superfamily transferase | |||||
| * | ? | NC_000913 | 1113376 = | NA (NA) | 10 (0.080) | 7/166 | NT | NA | coding (2514/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| ? | NC_000913 | 1113405 = | NA (NA) | coding (2543/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist | |||||
| * | ? | NC_000913 | 1167402 = | NA (NA) | 15 (0.130) | 9/162 | NT | NA | noncoding (1/30 nt) | REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1167432 = | NA (NA) | intergenic (+43/‑167) | ndh/ycfJ | respiratory NADH dehydrogenase 2/cupric reductase/uncharacterized protein | |||||
| * | ? | NC_000913 | = 1269275 | NA (NA) | 29 (0.250) | 10/162 | NT | 21.3% | coding (1/108 nt) | ldrA | toxic polypeptide, small |
| ? | NC_000913 | = 1269313 | 118 (0.910) | intergenic (‑38/+390) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small | |||||
| * | ? | NC_000913 | 1269841 = | 131 (1.010) | 23 (0.200) | 9/162 | NT | 21.0% | intergenic (‑31/+397) | ldrB/ldrC | toxic polypeptide, small/toxic polypeptide, small |
| ? | NC_000913 | 1270354 = | 54 (0.460) | intergenic (‑9/+395) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter | |||||
| * | ? | NC_000913 | = 1299498 | 1 (0.010) | 116 (0.940) | 72/170 | NT | 99.6% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1396634 | NA (NA) | 16 (0.130) | 9/164 | NT | 37.5% | noncoding (591/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428170 = | 29 (0.220) | noncoding (625/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1625934 | 104 (0.800) | 19 (0.160) | 11/166 | NT | 15.2% | coding (1447/2046 nt) | dcp | dipeptidyl carboxypeptidase II |
| ? | NC_000913 | = 1625952 | 115 (0.960) | coding (1429/2046 nt) | dcp | dipeptidyl carboxypeptidase II | |||||
| * | ? | NC_000913 | = 1670967 | 99 (0.770) | 17 (0.150) | 10/152 | NT | 15.2% | intergenic (+15/‑409) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein |
| ? | NC_000913 | = 1670981 | 106 (0.960) | intergenic (+29/‑395) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_000913 | 1961815 = | 105 (0.810) | 20 (0.170) | 15/158 | NT | 18.0% | intergenic (+20/‑157) | argS/yecT | arginyl‑tRNA synthetase/uncharacterized protein |
| ? | NC_000913 | 1961845 = | 89 (0.780) | intergenic (+50/‑127) | argS/yecT | arginyl‑tRNA synthetase/uncharacterized protein | |||||
| * | ? | NC_000913 | = 2066832 | 0 (0.000) | 20 (0.170) | 11/160 | NT | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2218172 = | 106 (0.820) | 21 (0.170) | 13/168 | NT | 16.1% | coding (386/1158 nt) | yehY | putative ABC transporter permease |
| ? | NC_000913 | 2218212 = | 119 (0.980) | coding (346/1158 nt) | yehY | putative ABC transporter permease | |||||
| * | ? | NC_000913 | = 2277873 | 110 (0.850) | 25 (0.220) | 6/160 | NT | 19.9% | coding (1574/1590 nt) | yejF | microcin C ABC transporter ATPase |
| ? | NC_000913 | = 2277883 | 103 (0.890) | coding (1584/1590 nt) | yejF | microcin C ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 2304590 | 118 (0.910) | 17 (0.140) | 9/164 | NT | 15.1% | noncoding (174/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304834 | 82 (0.690) | noncoding (418/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2405625 | 97 (0.750) | 18 (0.150) | 12/164 | NT | 16.0% | intergenic (‑553/+78) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | NC_000913 | = 2405660 | 100 (0.840) | intergenic (‑588/+43) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | NC_000913 | 2454020 = | 112 (0.870) | 17 (0.150) | 8/160 | NT | 15.1% | pseudogene (982/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| ? | NC_000913 | 2454054 = | 90 (0.780) | pseudogene (948/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein | |||||
| * | ? | NC_000913 | = 2539674 | NA (NA) | 12 (0.100) | 7/164 | NT | NA | intergenic (‑91/+43) | cysM/cysA | cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit |
| ? | NC_000913 | = 2539688 | NA (NA) | intergenic (‑105/+29) | cysM/cysA | cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit | |||||
| * | ? | NC_000913 | 2568139 = | NA (NA) | 8 (0.070) | 7/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 2568169 = | NA (NA) | noncoding (31/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 2662311 = | NA (NA) | 16 (0.130) | 8/168 | NT | NA | noncoding (3/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662337 = | NA (NA) | noncoding (29/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2727847 = | NA (NA) | 16 (0.130) | 6/170 | NT | NA | noncoding (1338/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727872 = | NA (NA) | noncoding (1313/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 78 (0.650) | 14/166 | NT | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 53 (0.430) | 11/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2730847 = | 0 (0.000) | 49 (0.410) | 11/164 | NT | 100% | noncoding (311/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4166946 | NA (NA) | noncoding (288/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 2835099 = | NA (NA) | 15 (0.130) | 7/164 | NT | NA | noncoding (33/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3650712 = | NA (NA) | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 2837464 | NA (NA) | 13 (0.110) | 5/162 | NT | NA | intergenic (‑39/+114) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| ? | NC_000913 | = 2837491 | NA (NA) | noncoding (27/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2950598 = | NA (NA) | 14 (0.120) | 7/158 | NT | NA | intergenic (+25/+37) | argA/recD | amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain |
| ? | NC_000913 | 2950615 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3231252 = | NA (NA) | 17 (0.140) | 7/164 | NT | NA | noncoding (1/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 3231282 = | NA (NA) | noncoding (31/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 3277819 = | NA (NA) | 8 (0.070) | 6/162 | NT | NA | noncoding (1/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3277844 = | NA (NA) | noncoding (26/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3453931 = | 139 (1.080) | 25 (0.210) | 11/162 | NT | 17.7% | coding (1468/1470 nt) | gspA | general secretory pathway component, cryptic |
| ? | NC_000913 | 3453962 = | 106 (0.900) | coding (1437/1470 nt) | gspA | general secretory pathway component, cryptic | |||||
| * | ? | NC_000913 | 3470738 = | NA (NA) | 6 (0.050) | 4/168 | NT | NA | coding (592/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470767 = | NA (NA) | coding (563/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3620116 | NA (NA) | 14 (0.120) | 7/166 | NT | 100% | coding (925/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620152 | 0 (0.000) | coding (961/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 17 (0.140) | 8/166 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 31 (0.260) | 9/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620614 | NA (NA) | 35 (0.290) | 10/166 | NT | 100% | coding (1423/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620635 | 0 (0.000) | coding (1444/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3622466 = | NA (NA) | 32 (0.260) | 15/170 | NT | 60.4% | coding (3275/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3622497 = | 22 (0.170) | coding (3306/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3622540 = | NA (NA) | 30 (0.250) | 9/168 | NT | 100% | coding (3349/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3622556 = | 0 (0.000) | coding (3365/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3625629 = | NA (NA) | 25 (0.210) | 12/166 | NT | 17.9% | noncoding (41/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3625675 = | 115 (0.960) | intergenic (+161/+4) | yhhI/yhhJ | putative transposase/putative ABC transporter permease | |||||
| * | ? | NC_000913 | = 3650792 | NA (NA) | 15 (0.120) | 6/166 | NT | NA | noncoding (81/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3650805 | NA (NA) | noncoding (94/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 3943666 | NA (NA) | 24 (0.190) | 7/170 | NT | NA | intergenic (+156/‑38) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943696 | NA (NA) | intergenic (+186/‑8) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 3946665 = | 143 (1.110) | 67 (0.560) | 12/166 | NT | 35.3% | intergenic (+58/‑35) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 3946689 = | 112 (0.930) | intergenic (+82/‑11) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 4063563 | NA (NA) | 10 (0.080) | 6/164 | NT | NA | noncoding (45/75 nt) | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4063593 | NA (NA) | noncoding (75/75 nt) | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4168341 | 17 (0.130) | 22 (0.190) | 13/158 | NT | 59.4% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | NA (NA) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4171625 | 34 (0.260) | 103 (0.860) | 16/166 | NT | 76.5% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213004 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4235376 = | NA (NA) | 10 (0.090) | 7/156 | NT | NA | coding (1619/1650 nt) | pgi | glucosephosphate isomerase |
| ? | NC_000913 | 4235411 = | NA (NA) | intergenic (+4/‑495) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913 | 4325806 = | NA (NA) | 34 (0.290) | 6/164 | NT | NA | noncoding (5/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 4325838 = | NA (NA) | noncoding (37/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 9 (0.070) | 5/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
| * | ? | NC_000913 | 4460417 = | NA (NA) | 15 (0.120) | 9/168 | NT | NA | noncoding (3/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4460445 = | NA (NA) | noncoding (31/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4587878 | NA (NA) | 19 (0.160) | 11/162 | NT | NA | noncoding (7/27 nt) | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4587891 | NA (NA) | noncoding (20/27 nt) | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||