mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 288 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4621838 | 150 (1.160) | 6 (0.050) | 5/162 | NT | 4.2% | coding (70/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4621865 | 138 (1.170) | coding (97/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | 4615433 = | 128 (0.990) | 12 (0.100) | 9/158 | NT | 9.5% | coding (111/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | 4615467 = | 114 (1.000) | coding (77/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | = 4602165 | 133 (1.030) | 19 (0.160) | 11/164 | NT | 13.0% | coding (694/771 nt) | yjjP | DUF1212 family inner membrane protein |
| ? | NC_000913 | = 4602178 | 132 (1.110) | coding (681/771 nt) | yjjP | DUF1212 family inner membrane protein | |||||
| * | ? | NC_000913 | 4523842 = | 149 (1.150) | 10 (0.080) | 7/170 | NT | 7.0% | coding (253/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | 4523877 = | 123 (1.000) | coding (218/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | = 4511992 | 159 (1.230) | 7 (0.060) | 6/170 | NT | 4.3% | coding (423/957 nt) | fecD | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4512009 | 163 (1.320) | coding (406/957 nt) | fecD | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | 4497494 = | 136 (1.050) | 16 (0.130) | 11/166 | NT | 11.1% | pseudogene (820/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | 4497532 = | 129 (1.070) | pseudogene (858/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | 4486252 = | 110 (0.850) | 12 (0.100) | 8/162 | NT | 11.1% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
| ? | NC_000913 | 4486291 = | 92 (0.780) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease | |||||
| * | ? | NC_000913 | 4467063 = | 146 (1.130) | 12 (0.100) | 8/170 | NT | 8.0% | coding (184/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| ? | NC_000913 | 4467094 = | 135 (1.090) | coding (153/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
| * | ? | NC_000913 | = 4400624 | 112 (0.870) | 14 (0.120) | 7/166 | NT | 11.6% | intergenic (+28/‑48) | hfq/hflX | global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication/GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator |
| ? | NC_000913 | = 4400640 | 109 (0.910) | intergenic (+44/‑32) | hfq/hflX | global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication/GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator | |||||
| * | ? | NC_000913 | 4394801 = | 155 (1.200) | 15 (0.120) | 8/166 | NT | 9.9% | coding (736/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| ? | NC_000913 | 4394833 = | 129 (1.070) | coding (768/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase | |||||