Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F54 I1 R1
|
44 |
120.8 |
6135323 |
93.2% |
5718121 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,757,662 |
(T)8→7 |
coding (939/957 nt) |
yfjH ← |
CP4‑57 prophage; uncharacterized protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,757,655 | 0 | T | . | 95.0%
| 585.7
/ 24.4
| 141 | coding (946/957 nt) | yfjH | CP4‑57 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (6/1); new base . (67/67); total (73/68) |
| Fisher's exact test for biased strand distribution p-value = 1.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 |
Only 100 of 157 total aligned reads displayed.
TGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTG > NC_000913/2757557‑2757748
|
cTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttt < 1:969924/100‑1 (MQ=255)
tCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCttttt < 1:859716/100‑1 (MQ=255)
ccTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttt > 1:2202956/1‑100 (MQ=255)
ttttGCAACGTATCACTTGTAAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttc < 2:2087364/100‑2 (MQ=255)
tttGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttct < 2:1145888/100‑3 (MQ=255)
tttGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttct > 2:137730/1‑98 (MQ=255)
ttGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttcta < 1:2522066/100‑4 (MQ=255)
ttGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCCATATGGCAAGTAGTAATTATTTACTTCtttttttcta < 1:1636688/100‑4 (MQ=255)
tGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttctac < 2:1488023/100‑5 (MQ=255)
tGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttctac < 1:1408431/100‑5 (MQ=255)
gCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACg > 1:348703/1‑100 (MQ=255)
gCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACg < 1:2579652/100‑1 (MQ=255)
cAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGa > 2:2194851/1‑100 (MQ=255)
cttATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACa < 1:1368607/98‑1 (MQ=255)
tATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACaag > 2:1368612/1‑98 (MQ=255)
aTCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAgcg < 2:2035705/100‑1 (MQ=255)
aTCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAgcg < 2:2222301/100‑1 (MQ=255)
cACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCt > 2:505666/1‑100 (MQ=255)
cACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCt > 1:1990500/1‑100 (MQ=255)
aCTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTa > 1:3061172/1‑100 (MQ=255)
tGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCg > 2:2733939/1‑100 (MQ=255)
tGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCg > 1:875769/1‑100 (MQ=255)
tGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCg > 2:764757/1‑100 (MQ=255)
tCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGaa < 1:1648951/100‑1 (MQ=255)
cAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGaaa > 1:1697870/1‑100 (MQ=255)
cAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGaaa > 2:21089/1‑100 (MQ=255)
aataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTCTACGAACAGCGCTATCGaaa < 2:614389/100‑1 (MQ=255)
aataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAg > 1:2217482/1‑100 (MQ=255)
aataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCAAAAg > 1:1480553/1‑100 (MQ=255)
ataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGc < 2:2936524/100‑1 (MQ=255)
ataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGt > 2:3033516/1‑100 (MQ=255)
ccgatctgtAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGttt < 2:2057657/94‑1 (MQ=255)
aGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGttt < 1:1625487/100‑1 (MQ=255)
aaaGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTT‑TTTTTATTGCGCTATCGAAAGCTTAtttt > 1:2552850/1‑99 (MQ=255)
aaGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTGCTTCTTTTTTTT‑TTTTTTTAACGCTATCGAAAGCTTTTTTTa > 1:1960116/1‑99 (MQ=255)
aGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACa > 2:1109015/1‑100 (MQ=255)
gtgtAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACAt > 2:2952213/1‑100 (MQ=255)
gtgtAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACAt > 2:1839733/1‑100 (MQ=255)
gtAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGtttagatcgg > 1:2057649/1‑93 (MQ=255)
gtAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCt < 1:446288/100‑1 (MQ=255)
tAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCtt > 1:1735448/1‑100 (MQ=255)
aGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTc < 1:1262821/100‑1 (MQ=255)
gATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCa < 2:395980/100‑1 (MQ=255)
gATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCa > 1:1227233/1‑100 (MQ=255)
aTTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAttttt > 1:327895/1‑100 (MQ=255)
aTTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAttttt < 2:1553266/100‑1 (MQ=255)
aTTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAttttt < 2:1780508/100‑1 (MQ=255)
aTTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAttttt < 1:2250347/100‑1 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAtttttt < 1:1097358/100‑1 (MQ=255)
aGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTaa > 2:2579383/1‑100 (MQ=255)
aGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTaa > 2:2705844/1‑100 (MQ=255)
ggCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTaaa > 2:1175173/1‑100 (MQ=255)
ggCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTaaa < 2:1051910/100‑1 (MQ=255)
gcgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTaaa < 1:770092/99‑1 (MQ=255)
gcgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAg < 2:948688/100‑1 (MQ=255)
ctcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTaa < 1:1497327/95‑1 (MQ=255)
cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAg > 1:2428201/1‑100 (MQ=255)
cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGa > 1:1110136/1‑100 (MQ=255)
gcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGAc < 1:2324517/100‑1 (MQ=255)
aGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCa < 1:1109011/100‑1 (MQ=255)
tatttattCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt < 1:531089/98‑1 (MQ=255)
tATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAtt > 1:1080292/1‑99 (MQ=255)
tATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTg < 1:1175169/100‑1 (MQ=255)
aTTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGa < 2:1886892/100‑1 (MQ=255)
aTTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGa < 2:1966992/100‑1 (MQ=255)
ttAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAtt < 2:63832/100‑1 (MQ=255)
ttAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAtt < 2:2792445/100‑1 (MQ=255)
aGTCTATATGGCAAGTAGTAATTATTTACTCC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTa > 1:1266102/1‑100 (MQ=255)
gTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaa > 2:2680866/1‑100 (MQ=255)
gTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaa < 1:2117028/100‑1 (MQ=255)
tCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTT‑TATGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaaa > 1:2239442/1‑100 (MQ=255)
cTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTT‑TTTTTTTTGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaa > 1:2458332/1‑98 (MQ=255)
cTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaaaa > 1:1821354/1‑100 (MQ=255)
tataTGGTAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAAt > 2:1452883/1‑100 (MQ=255)
tataTGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAAt < 1:2579369/100‑1 (MQ=255)
tataTGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAAt < 1:829081/100‑1 (MQ=255)
atatGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATa < 2:1227237/100‑1 (MQ=255)
atGGCAAGTAGTAATTATTTACTTCTTTTTTTT‑TTTTTTTTTCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGt > 1:1413666/1‑100 (MQ=255)
atGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGt > 2:2675191/1‑100 (MQ=255)
tGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTa > 1:696227/1‑100 (MQ=255)
gCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTa < 2:2053087/98‑1 (MQ=255)
cAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCa > 1:446746/1‑100 (MQ=255)
cAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCa < 2:3060912/100‑1 (MQ=255)
cAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCa > 1:2779915/1‑100 (MQ=255)
aaGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCaa < 2:2235001/100‑1 (MQ=255)
agtagtAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAAc < 2:261247/100‑1 (MQ=255)
gtagtaATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAAcc < 1:162490/100‑1 (MQ=255)
gtagtaATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAAcc < 1:2680850/100‑1 (MQ=255)
gtagtaATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAAcc < 2:749589/100‑1 (MQ=255)
tagtaATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCa > 1:530464/1‑100 (MQ=255)
taATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAg < 1:2666487/100‑1 (MQ=255)
taATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAg < 2:1682722/100‑1 (MQ=255)
aaTTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGc > 2:1687099/1‑100 (MQ=255)
attattTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCa < 1:2138926/100‑1 (MQ=255)
attattTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCa < 2:1888534/100‑1 (MQ=255)
attattTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCa < 2:490547/100‑1 (MQ=255)
attattTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCa > 1:3013379/1‑100 (MQ=255)
ttACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTg > 1:941097/1‑100 (MQ=255)
ttACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTg < 2:1990507/100‑1 (MQ=255)
ttACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTg < 1:3033497/100‑1 (MQ=255)
|
TGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTG > NC_000913/2757557‑2757748
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
