Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F125 I0 R1 327 181.4 8809959 94.1% 8290171 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,057,145 G→C 21.0% intergenic (‑196/+33) ibsC ← / ← serA toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,057,1450GC21.0% 474.9 / 128.9 211intergenic (‑196/+33)ibsC/serAtoxic membrane protein/D‑3‑phosphoglycerate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (80/86);  new base C (27/17);  total (108/103)
Fisher's exact test for biased strand distribution p-value = 1.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.12e-01

Only 100 of 215 total aligned reads displayed.

CATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTTCGG  >  NC_000913/3057046‑3057242
                                                                                                   |                                                                                                 
cATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAg                                                                                                   >  2:406178/1‑100 (MQ=255)
cATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAg                                                                                                   >  1:1575825/1‑100 (MQ=255)
 aTTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGt                                                                                                  <  2:171540/100‑1 (MQ=255)
     aTCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGAcc                                                                                              <  2:3546710/100‑1 (MQ=255)
      tCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCt                                                                                             >  2:2747075/1‑100 (MQ=255)
           cTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCg                                                                                        >  1:1178588/1‑100 (MQ=255)
           cTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCg                                                                                        >  2:1163004/1‑100 (MQ=255)
            tttGAATTATTTTCTGGAGCAGAATCGCAAAGTAGAATGAGCAAAGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGACAGTGACATGCCCGt                                                                                       >  1:2169406/1‑100 (MQ=255)
             ttGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGtt                                                                                      <  2:1844635/100‑1 (MQ=255)
              tGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTg                                                                                     <  1:1340318/100‑1 (MQ=255)
               gATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAGGTCACTGACTTGCCCGtttt                                                                                    <  2:3315564/100‑3 (MQ=38)
               gATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGa                                                                                    >  2:2574001/1‑100 (MQ=255)
                atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGACGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGa                                                                                    <  1:797020/99‑1 (MQ=255)
                atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAGGTCACTGACTTGCCCGttttt                                                                                   <  1:1722015/100‑4 (MQ=38)
                atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAGGTCACTGACTTGCCCGttttt                                                                                   <  2:629037/100‑4 (MQ=38)
                atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAGGTCACTGACTTGCCCGttttt                                                                                   <  2:337804/100‑4 (MQ=38)
                atttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAt                                                                                   >  2:2731727/1‑100 (MQ=255)
                 tttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAGCGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGAtt                                                                                  >  1:2443078/1‑100 (MQ=255)
                  ttatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAGGTCACTGACTTGCCCGttttttt                                                                                 <  2:361198/100‑6 (MQ=37)
                  ttattgTCTGGAGTAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGCGAAGGGATAAAAAGACGGGCAAGTCAGTGACCTGCCCGTTgctct                                                                                 >  1:2727847/1‑96 (MQ=255)
                   tatttTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAGGTCACTGACTTGCCCGttttttta                                                                                <  1:508890/100‑7 (MQ=37)
                      tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGGGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCag                                                                             >  2:1498014/1‑100 (MQ=255)
                      tttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCag                                                                             >  1:3199250/1‑100 (MQ=255)
                       ttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCaga                                                                            <  1:1638182/100‑1 (MQ=255)
                       ttCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCaga                                                                            <  2:2028489/100‑1 (MQ=255)
                         cTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAgaga                                                                          >  1:165262/1‑100 (MQ=255)
                         cTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGAGATAAAAGAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAgaga                                                                          >  1:1311273/1‑100 (MQ=255)
                           ggAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAg                                                                        >  2:1003648/1‑100 (MQ=255)
                           ggAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAg                                                                        <  1:2290462/100‑1 (MQ=255)
                              gCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAgggg                                                                     >  1:2217944/1‑100 (MQ=255)
                              gCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGGTGATTTTCAGAGCAggg                                                                      >  1:3574385/1‑99 (MQ=255)
                                 gACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAAt                                                                  >  2:3696337/1‑100 (MQ=255)
                                  aCTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAAtt                                                                 <  2:2167006/100‑1 (MQ=255)
                                     cGCAACGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGt                                                              >  2:1073975/1‑100 (MQ=255)
                                     cGCAAAGTAGAATGCGCAACGCGGCAACTGTGTGGAGAAGGGATAAAAATACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAg                                                               <  1:416137/99‑1 (MQ=255)
                                     cGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGt                                                              >  1:2487403/1‑100 (MQ=255)
                                         aaGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcag                                                          >  2:3253560/1‑100 (MQ=255)
                                         aaGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcag                                                          <  1:3066243/100‑1 (MQ=255)
                                         aaGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcag                                                          <  2:3753082/100‑1 (MQ=255)
                                         aaGTAGAATACGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcag                                                          <  1:1058146/100‑1 (MQ=255)
                                          aGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTAcagc                                                         <  1:4124238/100‑1 (MQ=255)
                                           gTAGAATGCACAACGCTGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCCAGTCAGTGACCTGCCCGTTGATTATCAGAGAAGGGGAATTAGTAc                                                            >  1:4043891/1‑96 (MQ=255)
                                              gAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGAc                                                     <  1:3259433/100‑1 (MQ=255)
                                              gAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGAc                                                     <  2:1946873/100‑1 (MQ=255)
                                              gAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGAc                                                     >  1:1000867/1‑100 (MQ=255)
                                                 tGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACggg                                                  <  2:683699/100‑1 (MQ=255)
                                                  gcgcAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGgc                                                 <  2:4397313/100‑1 (MQ=255)
                                                     cAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGcgcg                                              >  2:2435927/1‑100 (MQ=255)
                                                        cgcgGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGaa                                            <  1:4247090/99‑1 (MQ=255)
                                                         gcgGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATg                                          <  2:2336302/100‑1 (MQ=255)
                                                          cgGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATgg                                         <  1:1702527/100‑1 (MQ=255)
                                                          cgGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGCTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATgg                                         >  2:1408112/1‑100 (MQ=255)
                                                             cAACGGCGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTAc                                      >  1:2697912/1‑100 (MQ=255)
                                                               aCGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTAccc                                    <  1:1860095/100‑1 (MQ=255)
                                                                    gtgGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAAt                               <  1:2548301/100‑1 (MQ=255)
                                                                      ggAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAg                             <  2:1326739/100‑1 (MQ=255)
                                                                      ggAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAg                             <  1:3980659/100‑1 (MQ=255)
                                                                        agaAGGGATAAAAAAACGGGCAAGTCGGTGACCTGCCCGGTGATTCTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAAt                               <  1:2806315/96‑1 (MQ=255)
                                                                        agaAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCt                           >  1:2086297/1‑100 (MQ=255)
                                                                           aGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTc                        <  2:291503/100‑1 (MQ=255)
                                                                           aGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTc                        <  1:3767254/100‑1 (MQ=255)
                                                                           aGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGACATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTc                        >  1:2378047/1‑100 (MQ=255)
                                                                            tctgaaaatcaaCGGGCAGGTCACTGACTTGCCCGTTGACTTTCAGAGAAGGGCAACTAGTACATCACACGGGCGCGAATGGTAACCGGAAGTGCTGTCa                       >  1:742223/11‑100 (MQ=12)
                                                                             ggATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCAt                      <  1:3114129/100‑1 (MQ=255)
                                                                              tgaaaatcaaCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCAtt                     >  2:96606/9‑100 (MQ=37)
                                                                              gATAAGAAAACGGGCAAGTCAGTGCCCCTCCCGTTGATTTTCAGGGAAGGGTAATTAGTACAGCAGAGGGGCGCCAATGGTATCGGGTAAAGCCTTCAt                      >  1:2655106/1‑99 (MQ=255)
                                                                               gagaatcaaCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCCAATGGTACCCGTAATAGCTTTCATTg                    >  1:3467355/8‑100 (MQ=37)
                                                                                tAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGc                   >  1:81391/1‑100 (MQ=255)
                                                                                 aaaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGcc                  >  1:1914331/1‑100 (MQ=255)
                                                                                 aaaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGcc                  <  1:3880391/100‑1 (MQ=255)
                                                                                 aaaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGcc                  <  2:2489696/100‑1 (MQ=255)
                                                                                  aaaaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCt                 >  1:1130950/1‑100 (MQ=255)
                                                                                    aaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGc               <  2:2850045/100‑1 (MQ=255)
                                                                                    aaaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGCGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGc               >  1:461905/1‑100 (MQ=255)
                                                                                     caaCGGGCAGGTCACTGACTTGCCCGTTGATTTTCCGAGCCGGGGACTTAGTCCAGCAGACGGGCGCGAAAGGCACCCGGAATAGCTCTCCTTGcc                  >  1:68930/2‑96 (MQ=19)
                                                                                     aaaCGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGTCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCa              <  2:1751793/100‑1 (MQ=255)
                                                                                      aaCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAg             >  2:890297/1‑100 (MQ=39)
                                                                                      aaCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAg             >  2:310549/1‑100 (MQ=39)
                                                                                       actggCAATGCAGAGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTgacgc            >  1:4116064/4‑96 (MQ=255)
                                                                                       aCGGGCAGGTCACTGTCTTGCCCGTTGATTTTCAGAGACGGGGAATTAGTACAGCAGACGGGCGCGGATGGTACGCGGAATAGCTTTCATTGcc                  >  1:1226022/1‑94 (MQ=255)
                                                                                       aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc            >  2:1793464/1‑100 (MQ=39)
                                                                                       aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc            >  2:3136832/1‑100 (MQ=255)
                                                                                       aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc            >  2:768155/1‑100 (MQ=39)
                                                                                       aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc            >  2:2226646/1‑100 (MQ=39)
                                                                                       aCGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgc            >  2:1704840/1‑100 (MQ=255)
                                                                                        cGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgcg           >  2:1225284/1‑100 (MQ=255)
                                                                                        cGGGCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgcg           >  2:1721899/1‑100 (MQ=255)
                                                                                        cGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgcg           >  1:3357903/1‑100 (MQ=255)
                                                                                         gggCAGGTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAgcgc          >  2:798670/1‑100 (MQ=255)
                                                                                          ggCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCt         >  2:1596750/1‑100 (MQ=255)
                                                                                          ggCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGAAATAGCTTTCATTGCCTGCAgcgc          >  1:3283562/1‑99 (MQ=255)
                                                                                           gCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCtt        <  2:3872178/100‑1 (MQ=255)
                                                                                            cgaGTCAGTGCCCTCCGCGTTGATGTTTAGAGAGAGGGAATTAGTACAGCAGACGGGCGGGAATGGTACCCGGATTAGCTGTCATTGCCTGCAGCGCttt       <  1:2048135/98‑1 (MQ=255)
                                                                                            cAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCttt       >  1:301413/1‑100 (MQ=255)
                                                                                              ggTCACTGACTTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCttttt     >  2:3179573/2‑100 (MQ=255)
                                                                                               gTCAGTGCCCTGCCCGTTGATTTTCAGAGAAGGGTAATTAGTACAGCAGACTGGCGCGATTGGTACCCTGAATAGCTTTCATTGCCGCCAgc            <  1:2912011/92‑1 (MQ=255)
                                                                                                tCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTTCg   <  2:1686064/100‑1 (MQ=255)
                                                                                                 cAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTTCgg  <  2:3199267/100‑1 (MQ=255)
                                                                                                 cAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTTCgg  <  1:964837/100‑1 (MQ=255)
                                                                                                 cAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTTCg   <  2:3600645/99‑1 (MQ=255)
                                                                                                   |                                                                                                 
CATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGATAAAAAAACGGGCAAGTCAGTGACCTGCCCGTTGATTTTCAGAGAAGGGGAATTAGTACAGCAGACGGGCGCGAATGGTACCCGGAATAGCTTTCATTGCCTGCAGCGCTTTTTCGG  >  NC_000913/3057046‑3057242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A