Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F112 I0 R1 51 112.5 5500062 95.1% 5230558 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,352,826 G→A 70.2% P67L (CCG→CTG)  arcB ← aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,352,8260GA70.2% 150.6 / 87.4 119P67L (CCG→CTG) arcBaerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB
Reads supporting (aligned to +/- strand):  ref base G (14/21);  new base A (36/46);  total (51/68)
Fisher's exact test for biased strand distribution p-value = 8.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01

Only 100 of 120 total aligned reads displayed.

CTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGG  >  NC_000913/3352729‑3352922
                                                                                                 |                                                                                                
ctcgcgcATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGc                                                                                                <  1:575762/100‑1 (MQ=255)
 tcgcgcATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCg                                                                                               <  1:2601084/100‑1 (MQ=255)
 tcgcgcATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCg                                                                                               <  2:1544567/100‑1 (MQ=255)
   gcgcATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTa                                                                                             >  1:2661855/1‑100 (MQ=255)
    cgcATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTaa                                                                                            >  1:1125649/1‑100 (MQ=255)
      cATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATc                                                                                          <  2:2733087/100‑1 (MQ=255)
      cATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATc                                                                                          <  1:137830/100‑1 (MQ=255)
       aTCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCa                                                                                         >  1:835679/1‑100 (MQ=255)
       aTCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCa                                                                                         <  2:2457712/100‑1 (MQ=255)
          tcctccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCa                                                                                      >  1:1575284/1‑100 (MQ=255)
           cctccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCaa                                                                                     <  2:1227705/100‑1 (MQ=255)
            ctccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCaaa                                                                                    >  2:928851/1‑100 (MQ=255)
            ctccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCaaa                                                                                    >  2:51368/1‑100 (MQ=255)
            ctccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCACCCACAGCGTAATCAGCaaa                                                                                    <  2:467715/100‑1 (MQ=255)
             tccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAAc                                                                                   <  1:2373022/100‑1 (MQ=255)
             tccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAAc                                                                                   <  1:2748821/100‑1 (MQ=255)
              ccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAAcc                                                                                  <  2:1088719/100‑1 (MQ=255)
               cAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAAcc                                                                                  <  2:1982585/99‑1 (MQ=255)
               cAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGGAGACCGCCCACAGCGTAATCAGCAAACCa                                                                                 >  2:1516309/1‑100 (MQ=255)
                aGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCaa                                                                                >  1:847573/1‑100 (MQ=255)
                 gTTTTTGCACCAGCCGTGACAGACGTTGTCGTGGCTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCaaa                                                                               <  2:2603716/100‑1 (MQ=255)
                  tttttGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAaag                                                                              <  1:211075/100‑1 (MQ=255)
                   ttttGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAaaga                                                                             <  2:2652676/100‑1 (MQ=255)
                     ttGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTACTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAaagaag                                                                           <  2:1945465/100‑1 (MQ=255)
                        cACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGAt                                                                         >  1:2692615/1‑99 (MQ=255)
                        cACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATa                                                                        <  1:839975/100‑1 (MQ=255)
                         aCCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAg                                                                       <  2:1248023/100‑1 (MQ=255)
                         aCCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAg                                                                       >  1:2268061/1‑100 (MQ=255)
                          ccAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGa                                                                      >  1:762342/1‑100 (MQ=255)
                          ccAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGa                                                                      >  1:2449924/1‑100 (MQ=255)
                             gCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTATTTCTTCTATTTTGTAATCAGCAAACCAAAGAAGATAGAACg                                                                   <  1:1987903/100‑1 (MQ=255)
                             gCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACg                                                                   <  2:535886/100‑1 (MQ=255)
                              ccGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAACCAGCAAACCAAAGAAGATAGAACGa                                                                  >  2:557870/1‑100 (MQ=255)
                               cGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGaa                                                                 <  2:2126027/100‑1 (MQ=255)
                                gTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAAt                                                                <  2:1772789/100‑1 (MQ=255)
                                gTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAAt                                                                <  1:1196206/100‑1 (MQ=255)
                                gTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAAt                                                                <  1:1191933/100‑1 (MQ=255)
                                  gACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATaa                                                              >  1:116251/1‑100 (MQ=255)
                                   aCAGACGTTGTCGTGAGTCCTCCAGTGGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAAc                                                             <  2:574852/100‑1 (MQ=255)
                                    cAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACa                                                            <  1:1150016/100‑1 (MQ=255)
                                    cAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACa                                                            >  1:664001/1‑100 (MQ=255)
                                      gACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATc                                                          >  1:1700534/1‑100 (MQ=255)
                                      gACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATc                                                          >  1:2085275/1‑100 (MQ=255)
                                       aCGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCTCCTACGGCGTAATCAGCAAAACAAAGAAGATAGAACGAATAACATCa                                                         >  2:2300235/1‑100 (MQ=255)
                                        cGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCaa                                                        <  2:1775649/100‑1 (MQ=255)
                                        cGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCaa                                                        <  2:830932/100‑1 (MQ=255)
                                        cGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCaa                                                        <  1:2023194/100‑1 (MQ=255)
                                          ttGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATg                                                      <  1:2603666/100‑1 (MQ=255)
                                           tGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGc                                                     <  2:2461976/100‑1 (MQ=255)
                                            gTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCt                                                    >  1:1520330/1‑100 (MQ=255)
                                              cGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCttt                                                  >  1:2169344/1‑100 (MQ=255)
                                              cGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCt                                                    >  2:1021640/1‑98 (MQ=255)
                                                tgtctcctgCAGTTGCTCGACGACCACCGATAGAAAGTATACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCg                                                <  2:514965/97‑1 (MQ=255)
                                                tGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCg                                                <  1:1329641/100‑1 (MQ=255)
                                                tGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCg                                                <  1:531235/100‑1 (MQ=255)
                                                 gACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGa                                               <  1:1038294/100‑1 (MQ=255)
                                                   ctcctcCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc                                             <  1:815168/100‑1 (MQ=255)
                                                   ctcctcCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc                                             <  1:1046624/100‑1 (MQ=255)
                                                   ctcctcCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc                                             <  1:696713/100‑1 (MQ=255)
                                                   ctcctcCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc                                             <  1:1716572/100‑1 (MQ=255)
                                                   ctcctcCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc                                             <  1:1116989/100‑1 (MQ=255)
                                                   ctcctcCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc                                             <  2:1206408/100‑1 (MQ=255)
                                                    tcctccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc                                             <  2:1422889/99‑1 (MQ=255)
                                                    tcctccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCt                                            <  1:1738478/100‑1 (MQ=255)
                                                     cctccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTg                                           <  2:1752102/100‑1 (MQ=255)
                                                       tccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCCATGCTTTCGaacaaa                                          >  2:2290345/1‑94 (MQ=255)
                                                       tccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGAc                                         >  1:187463/1‑100 (MQ=255)
                                                       tccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACCGCGTAATAAGCAAACCAAAGCAGATACACCGAACAACATCAATGCTTTCGACCTGa                                          >  2:1257393/1‑99 (MQ=255)
                                                       tccAGTTGCTCGACGACCACCGATAGAAAGTAGACAGCCCACAGCGTAAACAGCAAACAAAAGAAGAAAGAAAGAACAAAATCCATCCTTTCGAc                                              >  2:1365496/1‑95 (MQ=255)
                                                       tccAGTTGCTCGACGACCACCGATAGAAAGTAGACAGCACACAGCAGAATCAGCAAAACAAAGAAGATAGCACGAATAACATTAATGCTTTTGACCTGa                                          >  2:1257466/1‑99 (MQ=255)
                                                        ccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGAcc                                        <  1:1791656/100‑1 (MQ=255)
                                                        ccAGTTGCTCGACGACCACCGATAGAAAGTAGACAGCCCACAGCGAAATCAGCAAACCAAAGAAGATCGACCGAATCACATCAATGCTCTCGACCTGa                                          >  2:1144032/1‑98 (MQ=255)
                                                         cAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGAcc                                        <  1:459088/99‑1 (MQ=255)
                                                          aGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCAt                                      <  2:232948/100‑1 (MQ=255)
                                                            ttGCTCGACGACCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATgc                                    <  2:1337270/100‑1 (MQ=255)
                                                              cttccgatctcaccGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATgcag                                  <  1:1915459/90‑1 (MQ=255)
                                                                   acgacCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCCAAGAAGATAGAACGAATCACATCAATGCTTTCGACCTGACCATGCAGCACCa                             <  2:1641251/100‑1 (MQ=255)
                                                                    cgacCACCGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCa                             >  1:1887310/1‑99 (MQ=255)
                                                                      accaccGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATgg                          >  2:1267034/1‑100 (MQ=255)
                                                                      accaccGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATgg                          <  1:1463297/100‑1 (MQ=255)
                                                                       ccaccGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGt                         >  2:2703387/1‑100 (MQ=255)
                                                                        caccGATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGtt                        >  2:1865371/1‑100 (MQ=255)
                                                                            gATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCg                    <  2:1376753/100‑1 (MQ=255)
                                                                            gATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCg                    >  1:1383923/1‑100 (MQ=255)
                                                                            gATAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCg                    <  2:1383917/100‑1 (MQ=255)
                                                                              tAGAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGcc                  >  2:91438/1‑100 (MQ=255)
                                                                                gAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCAt                >  2:1887497/1‑100 (MQ=255)
                                                                                gAAAGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCAt                >  1:2690474/1‑100 (MQ=255)
                                                                                 aacgTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCAt                >  2:1480555/4‑99 (MQ=255)
                                                                                 aaaGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTGCCGCCAt                >  2:2323797/1‑99 (MQ=255)
                                                                                 aaaGTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCAtt               <  2:1039912/100‑1 (MQ=255)
                                                                                    gTAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGt            <  2:2085262/100‑1 (MQ=255)
                                                                                     tAGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTa           <  1:2476819/100‑1 (MQ=255)
                                                                                      aGACCGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTa           <  2:2302235/99‑1 (MQ=255)
                                                                                       gACCGCCCACGGCGTAATCAGCAAACCAAAGAAGCTAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGCAcc         >  2:1540489/1‑100 (MQ=255)
                                                                                         ccGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACcac       >  1:1067795/1‑100 (MQ=255)
                                                                                         ccGCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACcac       >  1:47648/1‑100 (MQ=255)
                                                                                           gCCCACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTAAcaca      >  2:2251073/1‑99 (MQ=255)
                                                                                            cccACAGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAAt    <  1:2562773/100‑1 (MQ=255)
                                                                                              cacaGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATgg  >  1:1830753/1‑100 (MQ=255)
                                                                                                 |                                                                                                
CTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGG  >  NC_000913/3352729‑3352922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A