Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F120 I0 R1 38 148.3 7410925 93.3% 6914393 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,338,928 C→A 100% L107F (TTG→TTT)  mlaE ← ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,338,9280CA100.0% 545.4 / ‑6.7 162L107F (TTG→TTT) mlaEABC transporter maintaining OM lipid asymmetry, inner membrane permease protein
Reads supporting (aligned to +/- strand):  ref base C (0/1);  major base A (73/87);  minor base G (0/1);  total (73/89)

Only 100 of 173 total aligned reads displayed.

CGGATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAACAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAGAACCAGA  >  NC_000913/3338832‑3339024
                                                                                                |                                                                                                
cGGATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaac                                                                                               >  2:597996/1‑100 (MQ=255)
cGGATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaac                                                                                               <  1:1120361/100‑1 (MQ=255)
cGGATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaac                                                                                               <  2:1167755/100‑1 (MQ=255)
cGGATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaac                                                                                               <  2:3600051/100‑1 (MQ=255)
 ggATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaaca                                                                                              <  1:722204/100‑1 (MQ=255)
 ggATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaaca                                                                                              <  1:671623/100‑1 (MQ=255)
   aTCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaacaac                                                                                            <  1:2690550/100‑1 (MQ=255)
   aTCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAaaaaacaac                                                                                            >  1:3695175/1‑100 (MQ=255)
    tCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcg                                                                                           >  1:3302008/1‑100 (MQ=255)
    tCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcg                                                                                           >  1:1842035/1‑100 (MQ=255)
      cACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcgcg                                                                                         >  1:3275446/1‑100 (MQ=255)
      cACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcgcg                                                                                         >  1:830271/1‑100 (MQ=255)
      cACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcgcg                                                                                         >  2:235846/1‑100 (MQ=255)
      cACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcgcg                                                                                         <  2:328333/100‑1 (MQ=255)
      cACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcgcg                                                                                         >  2:585518/1‑100 (MQ=255)
      cACCGCCATCATCTCCATACTGGAGAGTTACTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAAcgcg                                                                                         >  2:1137009/1‑100 (MQ=255)
       aCCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCgg                                                                                        <  1:685974/100‑1 (MQ=255)
       aCCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCgg                                                                                        >  1:2292851/1‑100 (MQ=255)
         cGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCa                                                                                      <  2:3195314/100‑1 (MQ=255)
               catcTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAaccacc                                                                                >  2:2362305/1‑100 (MQ=255)
               catcTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCGGCGGTCAGCGCGGAACCGGCACGCCAGGCAAGAAGCAACGCGTCAaccac                                                                                 >  1:1791694/1‑99 (MQ=255)
               catcTCCATACTGGAGAGTTACTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAaccacc                                                                                <  1:1137003/100‑1 (MQ=255)
                 tctcCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCgg                                                                              >  2:3130921/1‑100 (MQ=255)
                  ctcCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGc                                                                             <  2:2715390/100‑1 (MQ=255)
                  ctcCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGc                                                                             >  2:2140326/1‑100 (MQ=255)
                  ctcCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGc                                                                             <  2:560209/100‑1 (MQ=255)
                   tcCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGCTTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCCAAAAACAACGCGGCAACCACCGGcc                                                                            >  1:3195688/1‑100 (MQ=255)
                    ccATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGcc                                                                            <  2:230938/99‑1 (MQ=255)
                     cATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGcccc                                                                          <  1:1283472/100‑1 (MQ=255)
                      aTACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCa                                                                         <  2:3385654/100‑1 (MQ=255)
                       tACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAg                                                                        <  1:1981312/100‑1 (MQ=255)
                        aCTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGt                                                                       >  1:1006921/1‑100 (MQ=255)
                           ggAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCa                                                                    <  2:97351/100‑1 (MQ=255)
                            gagaGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCAc                                                                   <  2:3072405/100‑1 (MQ=255)
                             agagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACg                                                                  >  2:2983776/1‑100 (MQ=255)
                             agagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACg                                                                  <  2:460156/100‑1 (MQ=255)
                             agagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACg                                                                  <  2:1002433/100‑1 (MQ=255)
                              gagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGc                                                                 <  2:830276/100‑1 (MQ=255)
                              gagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGc                                                                 >  1:2086502/1‑100 (MQ=255)
                              gagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGc                                                                 <  2:2789627/100‑1 (MQ=255)
                              gagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGc                                                                 <  1:2845235/100‑1 (MQ=255)
                              gagTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGc                                                                 <  1:159702/100‑1 (MQ=255)
                                gTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAg                                                               <  2:3259354/100‑1 (MQ=255)
                                gTTGCTCTGTAGCGCGCATCAGGCCGATCTCTGCGGTTAGCGCCGAACCAGCAGGCCACGCAGAAAACAACGCCGCAACCACCGGCGCCAGTCCAc                                                                   >  1:3363353/1‑96 (MQ=255)
                                gTTGATCTCTAGCGCGCCTCTGGCCGATTTGTGCGGTTAGCGCTGAACCAGCACGCCAGGCAAAAAACAACGCGGCAACCGCCGGCCCCAGTTCAc                                                                   <  1:1700132/96‑1 (MQ=255)
                                 ttGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGACGAACCAGCACGCCCGGCAAAAAAAAACGCGGCAACCAACGGCCCAAGCTCAc                                                                   >  1:1163010/1‑95 (MQ=255)
                                  tGCTCTGGAGCGCACGTGAGACCGATTGCTGGAGTGGGGGCAGAACCAGCACGAAAGGGAAAGAACAGCGCGAGAACCACAGGACCCAGTTCACGCAGTa                                                             <  1:1323089/100‑1 (MQ=255)
                                   gCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAg                                                            >  2:741407/1‑100 (MQ=255)
                                    ctctGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGc                                                           >  1:504768/1‑100 (MQ=255)
                                    ctctGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGc                                                           <  2:1703461/100‑1 (MQ=255)
                                    ctctGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGAGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGc                                                           <  2:2894002/100‑1 (MQ=255)
                                      ctGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGa                                                         >  2:1996704/1‑100 (MQ=255)
                                        gTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATa                                                       <  2:3495274/100‑1 (MQ=255)
                                        gTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATa                                                       <  2:1762333/100‑1 (MQ=255)
                                        gTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATa                                                       >  2:3279387/1‑100 (MQ=255)
                                        gTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGATCACGCAGTAGCGAt                                                        >  1:2094384/1‑99 (MQ=255)
                                         tAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATaa                                                      >  2:2146007/1‑100 (MQ=255)
                                          aGCGCGCATCGGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAAc                                                     <  2:2993398/100‑1 (MQ=255)
                                           gcgcgcATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACg                                                    >  1:2590439/1‑100 (MQ=255)
                                            cgcgcATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAAc                                                     >  1:712689/1‑98 (MQ=255)
                                            cgcgcATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGc                                                   >  2:1093770/1‑100 (MQ=255)
                                              cgcATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGcca                                                 >  1:1032815/1‑100 (MQ=255)
                                                cATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGccacc                                               >  2:545440/1‑100 (MQ=255)
                                                cATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGcca                                                 >  2:3095131/1‑98 (MQ=255)
                                                 aTCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGccacca                                              >  2:2469808/1‑100 (MQ=255)
                                                   cAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGc                                            <  1:1788156/100‑1 (MQ=255)
                                                    aGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCa                                           <  2:1547914/100‑1 (MQ=255)
                                                     ggCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCAt                                          >  1:3113464/1‑100 (MQ=255)
                                                     ggCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCAt                                          <  2:722000/100‑1 (MQ=255)
                                                     ggCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCAt                                          <  1:170001/100‑1 (MQ=255)
                                                     ggCCGATTTCTGCGGTTAGCGCCGAACCAACACGCCCGGCAAAAAACAACGCGGCAACCACCGGCACCAGTTCACACAGTAGCCATAACGCCACCAGCAt                                          >  1:1248998/1‑100 (MQ=255)
                                                        cGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATAcc                                       >  2:1015264/1‑100 (MQ=255)
                                                         gATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATAccc                                      <  1:107515/100‑1 (MQ=255)
                                                            ttCCGCGGTTAGTGCCGAACTATCGCTCCCGGCAAAAAACAGCGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCa                                     <  1:3533512/98‑1 (MQ=255)
                                                                gCGGTTAGCGCCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTgg                               <  2:3378526/100‑1 (MQ=255)
                                                                        cgcCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCa                       >  1:2772516/1‑100 (MQ=255)
                                                                         gcCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCGGTGGCGATAGCGCCACCAGCATACCCAGACTGGTTTCCGCAc                      >  1:2600765/1‑100 (MQ=255)
                                                                         gcCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCAc                      <  2:1842046/100‑1 (MQ=255)
                                                                         gcCGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCAc                      <  2:172080/100‑1 (MQ=255)
                                                                          ccGAACCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGCTAACGCCACCAGCATACCCAGACTGGTTTCCg                         >  1:3289734/1‑96 (MQ=255)
                                                                             aaCCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACtata                  >  2:1476071/1‑100 (MQ=255)
                                                                             aaCCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACtata                  <  1:2900427/100‑1 (MQ=255)
                                                                             aaCCAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACtata                  <  2:3428982/100‑1 (MQ=255)
                                                                               ccAGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAg                >  1:3641098/1‑100 (MQ=255)
                                                                                cAGCACGCCCGGCAAAAAAAAACGCGGCAACCACCGGCCCCAGTTCACGCAATAGCGATAACGCCACGAGACAACCCAGAAAGGCTTCCGCACtgcacga               >  1:3023283/1‑94 (MQ=255)
                                                                                 aGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAg                >  1:2860551/1‑98 (MQ=255)
                                                                                 aGCACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTg              <  2:1845764/100‑1 (MQ=255)
                                                                                 aGCACGCCCGGCAAAAAACAACACGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGt               <  2:219734/99‑1 (MQ=255)
                                                                                   cACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATACCGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGt            <  2:2586385/100‑1 (MQ=255)
                                                                                   cACGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGt            <  2:1444406/100‑1 (MQ=255)
                                                                                     cGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCa          <  2:3295450/100‑1 (MQ=255)
                                                                                     cGCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCa          >  2:3596036/1‑100 (MQ=255)
                                                                                      gCCCGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAg         <  1:1727089/100‑1 (MQ=255)
                                                                                       cccGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAGa        >  2:1612581/1‑100 (MQ=255)
                                                                                         cGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAGAAc      <  2:261883/100‑1 (MQ=255)
                                                                                         cGGCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAATGGTCAGAAc      >  1:1555368/1‑100 (MQ=255)
                                                                                           gCAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAGAACCa    >  1:2175992/1‑100 (MQ=255)
                                                                                            cAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAGAACCAg   >  2:2873470/1‑100 (MQ=255)
                                                                                            cAAAAAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCACACTGGTTTCCGCACTATAAGTGGTCAGAACCAg   <  1:2935114/100‑1 (MQ=255)
                                                                                             aaaaaaCAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAGAACCAGa  >  2:1685172/1‑100 (MQ=255)
                                                                                                |                                                                                                
CGGATCCACCGCCATCATCTCCATACTGGAGAGTTGCTCTGTAGCGCGCATCAGGCCGATTTCTGCGGTTAGCGCCGAACCAGCACGCCCGGCAAACAACAACGCGGCAACCACCGGCCCCAGTTCACGCAGTAGCGATAACGCCACCAGCATACCCAGACTGGTTTCCGCACTATAAGTGGTCAGAACCAGA  >  NC_000913/3338832‑3339024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A