Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I0 R1
|
306 |
176.9 |
8831342 |
93.4% |
8248473 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,971 |
C→A |
29.6% |
intergenic (‑181/+127) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,971 | 0 | C | A | 29.6%
| 515.7
/ 234.8
| 261 | intergenic (‑181/+127) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (97/83); new base A (71/5); total (171/90) |
| Fisher's exact test for biased strand distribution p-value = 7.18e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.85e-02 |
Only 100 of 275 total aligned reads displayed.
GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705873‑3706070
|
gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:209240/1‑100 (MQ=255)
gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:3549901/1‑100 (MQ=255)
ggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcgg < 2:2953282/100‑1 (MQ=255)
aTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt > 1:3831039/1‑100 (MQ=255)
aTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt < 1:291740/100‑1 (MQ=255)
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 1:3546962/100‑1 (MQ=255)
gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGTGGCGTTAACg > 1:669645/1‑100 (MQ=255)
tATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGc < 2:505637/100‑1 (MQ=255)
aTTGCTGCCGGATAGCGCTGCACGCAGAGGCACAGCGCAACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc > 1:2722073/1‑100 (MQ=255)
aTTGATGCCTGATGGCGCTGCACGTAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:348662/100‑1 (MQ=255)
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTAACGCCGCATccggcataaacaaag < 2:112005/100‑11 (MQ=37)
ctgcCGGATGGCGCTGCACGCGGAGGCACAGCGCCACGGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2363313/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:1943922/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:1550010/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3288729/1‑100 (MQ=255)
ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:3346639/1‑100 (MQ=255)
ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:1244450/1‑100 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 1:4219811/100‑1 (MQ=37)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 2:2179141/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3346619/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3028986/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2237018/100‑2 (MQ=37)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTCTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3113597/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2704199/100‑1 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGTATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:3638596/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:2433928/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:981849/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:836792/1‑100 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaaag < 1:125109/100‑11 (MQ=21)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 2:3239664/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:1629355/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 1:2284197/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:2648129/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCCCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3082814/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGTGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 1:430781/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:1538432/1‑100 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:2374408/100‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc > 1:2949552/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:1063379/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AACATCGTGCAAATTCAAt > 1:202565/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:140986/100‑1 (MQ=255)
aGCGCCACCGGATATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:1886058/99‑1 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:3938411/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:2841549/1‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:2591134/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑a < 1:169121/99‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑Ag < 2:378939/100‑1 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑a‑a > 2:2171039/1‑100 (MQ=255)
tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCCGATTCGGCGTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAGATTCAATACATTGC‑‑AG‑‑‑A‑At‑t > 1:1484584/1‑100 (MQ=18)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑g > 2:2293739/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑g < 2:2995149/100‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑g < 1:3023133/99‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGACCTAC‑AACATCGTGCAAGTTTAATCCATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑Gt > 2:467455/1‑100 (MQ=18)
ggcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAg > 2:2017649/8‑100 (MQ=17)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAgg < 1:247495/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGcc < 2:715622/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGcc > 2:3589071/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTg > 1:938256/1‑100 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 1:2205020/100‑1 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGa < 2:2691949/100‑1 (MQ=255)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:3772392/1‑100 (MQ=255)
cttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑AT‑‑‑G‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAgcgc > 2:945490/8‑98 (MQ=17)
ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑‑‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATc > 2:4343869/7‑100 (MQ=18)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:2062359/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:141880/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:1791456/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:2231739/1‑100 (MQ=255)
gtaggCCGGATAAGGCGTTCACGCTGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑AC‑‑‑C‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:645012/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AG‑‑‑G‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1889616/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGC‑‑AG‑‑‑G‑AT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2582802/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGC‑‑AG‑‑‑G‑AA‑ACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAgg > 1:2266878/4‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑AG‑‑‑A‑GA‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2553222/4‑100 (MQ=17)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCGGAG‑‑‑A‑AA‑AT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3145920/4‑100 (MQ=18)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 1:3266774/1‑100 (MQ=255)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:3801484/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGC‑‑AG‑‑‑A‑AA‑TCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3205087/3‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑AATTCA‑AC‑TT‑‑‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:4188952/3‑100 (MQ=21)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑AT‑‑‑G‑GG‑CCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:4033404/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑AG‑‑‑T‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:2096103/3‑100 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑AG‑‑‑G‑AG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1713708/3‑100 (MQ=18)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:380383/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:685377/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑G‑‑‑A‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:4283658/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCACTATATTGC‑‑AG‑‑‑A‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:732366/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑AA‑‑‑T‑TC‑TCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:868667/2‑99 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑AG‑‑‑A‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1609293/2‑100 (MQ=14)
ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTGC‑‑AG‑‑‑A‑GA‑TTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4098772/2‑100 (MQ=11)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑‑AA‑‑‑G‑AT‑TTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1361450/2‑100 (MQ=17)
ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1816571/2‑100 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑G‑‑‑A‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:2747060/1‑100 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AG‑‑‑G‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1226401/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑AT‑‑‑G‑AG‑CCAC‑‑GTAGTCCTGATAAGCGTAGCGCATCAGGCag > 1:1008699/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑AG‑‑‑AGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3361635/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑AG‑‑‑G‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1330197/1‑100 (MQ=21)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:3517417/1‑99 (MQ=17)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1357854/1‑100 (MQ=255)
gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 1:1232349/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCTGCCTAC‑AAAATCGTGCAAATTCAATACATTGT‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:802814/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2461829/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:4160287/1‑100 (MQ=255)
|
GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705873‑3706070
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
