Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F232 I0 R1
|
243 |
156.3 |
7646460 |
93.8% |
7172379 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,971 |
C→A |
24.8% |
intergenic (‑181/+127) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,971 | 0 | C | A | 24.8%
| 582.5
/ 185.5
| 247 | intergenic (‑181/+127) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (85/100); new base A (54/7); total (139/108) |
| Fisher's exact test for biased strand distribution p-value = 2.02e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-02 |
Only 100 of 256 total aligned reads displayed.
AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705872‑3706069
|
aGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgc < 1:2975533/100‑1 (MQ=255)
tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 1:1181234/100‑1 (MQ=255)
tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 2:1922835/100‑1 (MQ=255)
tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 2:3658811/100‑1 (MQ=255)
tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 2:3080685/100‑1 (MQ=255)
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 1:3152769/100‑1 (MQ=255)
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 2:479171/100‑1 (MQ=255)
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 1:1341473/100‑1 (MQ=255)
aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc > 2:238748/1‑100 (MQ=255)
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGGTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt > 2:1574190/1‑100 (MQ=255)
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGACt < 1:221453/100‑1 (MQ=255)
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:3728242/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:1757085/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTGTACAGATTGTTGAGAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:1275967/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtagatc > 2:1367714/1‑95 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:3082497/1‑100 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 2:1210838/1‑100 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGTTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 1:796663/100‑1 (MQ=37)
cGGATGGCGCTGCACGCAGAGGCACAGAGCCACCGGGTACACAGATTGTTGACAAAGTGCACTTTGTTTATTCCGAATGCGGCGTTAACGCCTTATCCg > 2:3456794/1‑99 (MQ=25)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:2292419/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3691514/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3307969/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3503374/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:2151811/100‑1 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 2:2988176/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaa > 1:2093381/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaac < 1:3450998/100‑7 (MQ=25)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCGTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaaac < 1:2034563/100‑4 (MQ=25)
cgcTGCACCCAGAGGCACAGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCAGCCGGCATaaa < 2:3592721/99‑3 (MQ=21)
cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaaaa < 2:5648/100‑1 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATc > 1:1083245/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCg > 1:24115/1‑100 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGt < 2:430322/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 2:967951/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 1:3817292/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGTCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 2:1606255/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa < 2:2240920/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 2:319885/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 1:1099019/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 1:2510151/100‑1 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAt > 1:448764/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAtt > 1:1150963/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTg < 1:1439973/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGc < 2:2117254/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑g < 1:1955712/100‑1 (MQ=255)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAt < 2:1447367/100‑1 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAttt > 2:2846995/1‑100 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAttt > 2:3339301/1‑100 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAttt < 2:2497902/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAtttt < 2:3288902/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAtttt < 2:1119414/100‑1 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTc < 1:975882/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGTGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑g < 2:2583548/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTTCAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑g < 2:2038941/100‑1 (MQ=255)
cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACACCTTATCCGGCCTACAAAATCGTGCAACTTCAATACATTGCA‑GAATTTTC‑‑GTAGGc > 2:342775/6‑100 (MQ=17)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGcc < 1:317924/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGcc > 1:912497/1‑100 (MQ=255)
ataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGcc > 2:2252534/5‑100 (MQ=18)
ttgACAAAGTGCGCTTTGTTTATGCTGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCt < 2:1203952/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGa > 1:2389729/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGAt > 1:1678092/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATa < 2:1150954/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGc > 1:656338/1‑100 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGa < 2:1654144/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAg < 1:155417/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAg < 1:3339326/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:3377198/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:2677106/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgc > 1:1466197/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCATTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgc < 2:1036240/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAGTTTTC‑‑GTAGGCCTGATAAGCGGAgcg < 2:3784228/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:61407/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAACCGGAgcg > 2:593317/1‑100 (MQ=255)
tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcgc < 1:734008/100‑1 (MQ=255)
tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:3771752/1‑99 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:3634411/100‑1 (MQ=255)
cttgtaggCCGGATAAGGCGGTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTGCA‑TGAGCCAC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:2330667/8‑100 (MQ=17)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:1193033/1‑100 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1316302/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑GGGACTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAg > 1:1888601/5‑100 (MQ=18)
taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2620268/4‑100 (MQ=17)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGCA‑CCATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2672484/4‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3671254/3‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3089403/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑AATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1840792/3‑100 (MQ=18)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:987211/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1754743/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTTATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:1846779/2‑100 (MQ=25)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA‑AGATTTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2455217/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:3785975/2‑100 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:2826802/1‑100 (MQ=255)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCA‑‑ATATGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:1139482/1‑97 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑GGGACTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 1:50490/1‑99 (MQ=18)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:858963/1‑100 (MQ=18)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3590016/1‑100 (MQ=18)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1383822/1‑100 (MQ=18)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1796265/1‑100 (MQ=17)
ccGGATAAGGCGTTCGCGCCGCATCCGGCCTACAAAAGTTTGCAAATTCAATAAATTGCA‑GAATTCAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAtt > 1:1516480/1‑100 (MQ=18)
cGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:2923840/1‑100 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:3802578/100‑1 (MQ=255)
|
AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705872‑3706069
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
