Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F210 I0 R1
|
188 |
159.1 |
7866933 |
93.3% |
7339848 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,171,858 |
A→T |
16.1% |
intergenic (+25/+21) |
qseC → / ← ygiZ |
quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,171,858 | 0 | A | T | 16.1%
| 442.1
/ 70.3
| 179 | intergenic (+25/+21) | qseC/ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (84/66); new base T (16/13); total (100/79) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.08e-01 |
Only 100 of 194 total aligned reads displayed.
GCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATACC > NC_000913/3171759‑3171957
|
gcgaaaTTGCATGACATGAATGTAAAATTTGGGAATGCCGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATAAGAGCCGTTaa > 2:2416965/4‑100 (MQ=255)
gCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaa > 2:2025445/1‑100 (MQ=255)
gCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTATCTATGAGAGCCGTTaa > 1:876704/1‑100 (MQ=255)
ccAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaa < 2:2804051/100‑1 (MQ=255)
cAAATTGCATTGCATGAATTTTTAATTTGTCAATGCCGAACAAGGTTGATTTGAGGCTAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaaa < 2:3512800/100‑1 (MQ=255)
cAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaaa > 1:3256261/1‑100 (MQ=255)
aaaTTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAAc < 2:2541865/100‑1 (MQ=255)
aaaTTGCATGGCATGAATGTTGAATTTGGGAATGCGGAAAAAGGTGGATTTGAGGAGAAGGTAAGATGGTAACTTGTTTGTCTATGAGAGACGTTaa > 2:3581917/1‑97 (MQ=255)
ttGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTACGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACg < 2:2240771/98‑1 (MQ=255)
ttGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGAc < 1:291501/100‑1 (MQ=255)
gcatggcatgAATGTTTAATTTGGGAATGCGGATCAAGGTGGATTTGAGGCTAAGGTAAGCTGGTAACTTTTCTTTCTATGAGGTCCGGTAAAACg < 2:1574540/96‑1 (MQ=255)
catggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGActct > 2:2369164/1‑100 (MQ=255)
atggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACtctc < 2:1969325/100‑1 (MQ=255)
ggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCa < 2:1021427/99‑1 (MQ=255)
ggcatgAATGTTGAATTTGGGAACGAGGACCAATGTGGATTTGAGGCGAAGGTAAGGTGCTATCTTCTCTTTCTCTGTGAGTCGTTTTAACGGCTCTCAt < 2:3174074/100‑1 (MQ=255)
gcatgAATGTTGAATTTGGGGATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATa > 2:2391252/1‑100 (MQ=255)
gcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTACTCTATCTATGAGAGCCGTTAAAACGACTCTCATa > 1:125495/1‑100 (MQ=255)
gcatgAATGTTGAATTTGGGAATGCGAAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATa < 2:3734611/100‑1 (MQ=38)
catgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAg < 2:2857399/100‑1 (MQ=38)
atgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAGa < 1:1483656/100‑1 (MQ=38)
atgAATGTTGAATTTGGGAATGCGGAAAAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAg < 2:1060268/99‑1 (MQ=38)
tgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAt > 2:3238982/1‑100 (MQ=255)
gAATGTTGAATTTGGGAATAAAGAACAAGATGGATTAGATGCGAAGGTAAGATGGTAACTTCTCTGTCTATGAGAGCAGTAAAAACGACTCCCATAg > 2:3669066/1‑97 (MQ=255)
aTGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAtttt < 2:1415883/100‑1 (MQ=255)
gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAGacagaga < 1:2153217/100‑7 (MQ=25)
gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc > 2:567564/1‑100 (MQ=255)
gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc < 2:2627317/100‑1 (MQ=255)
ttGAATTTGGGTATGTGGAATAAGGTGGATTTGAGGAGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc < 1:1821255/99‑1 (MQ=255)
ttGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACt > 1:1947268/1‑100 (MQ=255)
gAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTaa > 2:78761/1‑100 (MQ=255)
gAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACATCTCTGACTATGAGAGCAGTTAAAACGACTCTCATAGATTTTACTaa > 2:1865304/1‑100 (MQ=255)
aaTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAAt < 2:3083145/100‑1 (MQ=255)
aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa < 1:78764/100‑1 (MQ=255)
aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa > 1:819852/1‑100 (MQ=255)
aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa > 2:495130/1‑100 (MQ=255)
aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGAAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa > 2:2171281/1‑100 (MQ=255)
tttGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAg > 1:787444/1‑100 (MQ=255)
tGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAatat < 1:666567/100‑1 (MQ=255)
tGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAatat > 2:735559/1‑100 (MQ=255)
gAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAc > 1:2062214/1‑100 (MQ=255)
gAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAc < 1:914558/100‑1 (MQ=255)
gAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAACCGTTAAAACGAATATCATAGATTTTACTAATAGCAAAATATAAAc > 1:1230201/1‑100 (MQ=255)
aaCAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGCGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAcc < 2:3526996/100‑1 (MQ=255)
aCAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGACGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAGCg > 2:1712373/1‑100 (MQ=255)
aCAAGGTGGATTTGAAGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGACGTTAAAACGACTCTCATACATTTTAATCATAGCAAAATAAAAccc > 2:1259268/1‑99 (MQ=255)
cAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGt > 2:3849459/1‑100 (MQ=255)
ggTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTacc > 2:2324590/1‑100 (MQ=255)
gTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTc > 2:894773/1‑97 (MQ=255)
tGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCa < 2:1673142/100‑1 (MQ=255)
tttGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGTAAAATATAAACCGTCCCCaaaaa > 1:554718/1‑100 (MQ=255)
tttGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCaaaaa < 2:2218503/100‑1 (MQ=255)
tttGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCaaaaa > 2:3821458/1‑100 (MQ=255)
tGAGTCGAAGGTAAGCTGATAACTTCTCTGTTTATGAAAGCCGTTAAAACTACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAg < 2:195181/100‑1 (MQ=255)
ggCGAAGGTAATCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGc < 2:67136/98‑1 (MQ=255)
ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCGAAATATAAACCGTCCCCAAAAACGc > 2:58192/1‑98 (MQ=255)
ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAgaga > 1:685750/1‑97 (MQ=255)
ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcca > 2:96924/1‑100 (MQ=255)
ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcca > 2:45144/1‑100 (MQ=255)
ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcca > 1:1471476/1‑100 (MQ=255)
gAAGGTGAGCTGTTGATTTCTCGGTCTATGAGAGCCGTTAAATCGCCTCTCATAGATGTTATTAATCGCATCATCTAAACTGTCCCCATAAAAGccac < 2:2516232/98‑1 (MQ=255)
aaGGTAAGCTGGTAACTTCTCTGTCTATGATAGCCGTTAAAACGATTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGccacca < 1:3014774/99‑1 (MQ=255)
aGGTAAGCTGGTAATTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCaccaac < 1:1731376/100‑1 (MQ=255)
ggTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGAAAAAAAAAAAGCCaccaacc < 2:3894423/100‑1 (MQ=255)
gTAAGCTGGTATCTTCTCTGTCTATGAGAGTCGTTAAAACTACTCTCATAGATTTTACTACTAGCATCTTATTAACTGTTTCCAAAAAAGCCaccaacc < 2:3434756/99‑1 (MQ=255)
tAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACcac > 1:2746212/1‑100 (MQ=255)
tAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACcac > 2:2908444/1‑100 (MQ=255)
aaGCTGGTCACTTCTCTGTCTATGAGAGCCGTTAAAACGACTATCATAGATTTTACTAATAGCCAAATATAAACAGTACACAAAAAATACACAAACcaca > 2:622278/1‑100 (MQ=255)
gCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACaaa > 1:12278/1‑100 (MQ=255)
tGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAAcc < 1:29083/100‑1 (MQ=255)
ggTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCa > 1:3137797/1‑100 (MQ=255)
tAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGa < 2:3358760/100‑1 (MQ=255)
aaCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGAc < 1:2418778/100‑1 (MQ=255)
aCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACa > 1:2582574/1‑100 (MQ=255)
aCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACa < 1:2369186/100‑1 (MQ=255)
aCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACa > 2:1992156/1‑100 (MQ=255)
gtaaaatCTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAAt > 1:3181956/7‑100 (MQ=25)
ctctGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATa > 2:1756251/1‑100 (MQ=255)
ctctGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACAAACCACAAACcaaacaaa > 2:2038274/1‑98 (MQ=255)
cagTCTATGAGAGCCGTTAAAACGCCTCTCATAGATAAAAAAAAAAACAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATAcc < 2:3014148/98‑1 (MQ=255)
aatCTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACAGTTCCCAAAAAAGCCAACAACCACAAAACAGAAAAATACcg > 2:2738713/3‑100 (MQ=21)
gTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATAcc > 2:1205431/1‑98 (MQ=255)
tCTATAAGAGACGTTAAGACGATTCTCACAGATTTTACTAATAGCAAAATATAAAACTTCCCCAAAAAAGCCACCTTCCACAAACCAGACAAATACcgag < 2:108966/100‑1 (MQ=255)
cTATGCGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAAAATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAAAAcc > 2:2713088/1‑96 (MQ=37)
cTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACAACAAACAAAAAAAATACcga > 1:3536713/1‑98 (MQ=25)
cTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagc > 1:3696285/1‑100 (MQ=255)
tATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcg > 1:2194089/1‑100 (MQ=38)
tATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcg > 2:836132/1‑100 (MQ=38)
tATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCAAAAACCAGACAAATACcgagcg > 1:1598045/1‑100 (MQ=255)
aTGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcga > 1:2787436/1‑100 (MQ=38)
aTGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCATCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcga > 1:2242066/1‑100 (MQ=38)
agagTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCAACAACCACAAACCAGACAAATACCGAGCGAGaa > 2:3593193/1‑100 (MQ=38)
gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAt > 1:2405166/1‑100 (MQ=255)
gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACAAACCACAAACCAGACAAATACCGAGAGAGAAt > 2:2098904/1‑100 (MQ=255)
agCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAtn < 1:3819811/100‑2 (MQ=255)
gCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATAc < 1:2014656/100‑1 (MQ=255)
ccGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACa < 1:96927/100‑1 (MQ=255)
ccGTCAAAACGACTCGCATAGAGTTGAATAATAGCAAAATATAAACCGTCCNCAAGNAAGCCACNAANCACAAACCAGACANATACCGAGCGAGAATa < 2:3098665/98‑1 (MQ=255)
cGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCATCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAACGAAAATACat > 1:1451447/1‑100 (MQ=255)
gTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACata < 2:51369/100‑1 (MQ=255)
aaaCGATTCTCATAGATTTTACTAGTAGCAAAATATAAACAGTCCACAAAAAAGCCACCAACCACAAACCAGACAATTACCGAGCGAGAATACATATAcc < 2:319679/100‑1 (MQ=255)
|
GCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATACC > NC_000913/3171759‑3171957
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
