Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F210 I0 R1
|
188 |
159.1 |
7866933 |
93.3% |
7339848 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,048 |
G→T |
24.8% |
intergenic (‑258/+50) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,048 | 0 | G | T | 24.8%
| 611.8
/ 182.0
| 284 | intergenic (‑258/+50) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (101/107); new base T (67/2); total (175/109) |
| Fisher's exact test for biased strand distribution p-value = 2.61e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 291 total aligned reads displayed.
TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACC > NC_000913/3705949‑3706146
|
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCgg < 1:3151016/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgc < 1:2370531/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgc > 2:2706405/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1099675/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1172899/1‑100 (MQ=255)
atttgtaggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCAGA‑AA‑T‑C‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:2628907/9‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:1263790/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTCTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:3658973/1‑100 (MQ=255)
tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑T‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:691795/6‑100 (MQ=14)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATAGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:2414482/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCAAT‑CT‑T‑C‑‑‑TG‑‑GTAGGCCTGATAAGCATCGCGCATCAg > 1:19611/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:167847/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑CAAACTTTGCAAATTCAATATATTGC‑‑A‑AT‑C‑T‑‑‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2095046/4‑100 (MQ=18)
nggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCAGA‑AA‑T‑C‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3164560/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGG‑AA‑A‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 1:225326/3‑100 (MQ=18)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:3561352/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATACGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAAGCCTGATAAGCGGAGCGCATCAGGCa > 2:290824/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATGTTGCAGA‑AA‑C‑C‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2504201/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCG‑AT‑C‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2267474/2‑100 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1052906/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1622948/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑AT‑CCC‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:3468936/1‑100 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2806682/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACC‑AT‑C‑C‑‑‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2550234/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAGAGAT‑T‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1964773/1‑99 (MQ=17)
caggataaggcgTTCACGCCGCATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTGCAGA‑GA‑T‑G‑‑‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:2072162/9‑100 (MQ=14)
cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCC‑C‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:2950735/8‑99 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAAACCTGATAAGCGTAGCGCATCAGGCAgtt > 1:2114005/8‑100 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTGGG‑CT‑C‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:1017215/8‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑T‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3331247/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCAAT‑TC‑AAC‑‑‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCAatt > 1:1546523/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑A‑AT‑T‑CAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:440205/7‑97 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:393529/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑A‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1605903/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTGGG‑CT‑C‑C‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2016312/7‑96 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGT‑TT‑A‑T‑‑‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:59395/7‑96 (MQ=25)
ggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:534952/7‑100 (MQ=18)
aTGCGGCGTTAACTCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2408202/100‑1 (MQ=255)
ttcggcgTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAAATACAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAAGCCTGATAAGCGGAGCGCATCAGTCATTtttgc > 1:2650609/3‑100 (MQ=18)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑AT‑C‑CC‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 1:1830812/4‑95 (MQ=18)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:2861154/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTACAGA‑AT‑T‑A‑‑‑TC‑‑ATAAACATAATAAGCGGAGCACATCAGGCATTtttgcct > 1:1370461/1‑100 (MQ=18)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 2:1382847/100‑1 (MQ=255)
ggcaaacatcacttcgaaaacgtctctatcgaataattaaaagccatacaagactgatggcaaaggcaaaaatGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3102815‑M1/74‑100 (MQ=255)
ggcaaacatcacttcgaaaacgtctctatcgaataattaaaagccatacaagactgatggcaaaggcaaaaatGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1333199‑M1/74‑100 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAGTTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1265379/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:1200613/100‑1 (MQ=255)
acatcacttcgaaaacgtctctatcgaataattaaaagccatacaagactgatggcaaaggcaaaaatGCCTGATAAGCGGAGCGCATCAGGCATTtttg > 1:1786730‑M1/69‑100 (MQ=255)
aaCGCCTTATCCGACCTAC‑AAAATCGTGCAAATTCAATTCATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2408127/1‑100 (MQ=255)
cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGCCTTTGCCATCa > 1:1015696/1‑100 (MQ=255)
gCCTTATCCGGTCTAC‑AAAATCGTGCAAATTCAATACATTACAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGTGCGTATCAGGCATTTTTGCCTTTGCCATCAg < 2:915478/100‑1 (MQ=21)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt < 2:1455428/100‑1 (MQ=255)
aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg > 1:2584491/1‑100 (MQ=255)
aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 2:3762462/100‑1 (MQ=255)
aTCCGGCCTAA‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 1:802008/100‑1 (MQ=255)
tCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt > 1:622140/1‑100 (MQ=255)
cGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt > 1:1044028/1‑100 (MQ=255)
ggCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg < 1:564194/100‑1 (MQ=255)
ccTAC‑AAAATCGTGCAAATTCTATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc > 2:3190842/1‑100 (MQ=255)
ccTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc > 1:2723415/1‑100 (MQ=255)
aC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt < 2:1205512/99‑1 (MQ=255)
aaaTCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTaa < 1:3313972/100‑1 (MQ=255)
aaTCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:887696/100‑1 (MQ=255)
aaTCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 2:2324906/100‑1 (MQ=255)
gTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 2:2149316/1‑100 (MQ=255)
tGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:3714728/100‑1 (MQ=255)
tGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:3215207/100‑1 (MQ=255)
tGCAAATTCAATACACTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:3868206/100‑1 (MQ=255)
gCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:3402754/100‑1 (MQ=255)
cAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatagatcgg > 2:2603597/1‑93 (MQ=255)
cAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa < 2:1989175/100‑1 (MQ=255)
aaaTTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATAAGTCTTGTATGGCTTTTAATTATTCGAt > 1:484995/1‑100 (MQ=255)
aaTACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGAc > 1:775810/1‑100 (MQ=255)
ttGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTc > 2:1691914/1‑100 (MQ=255)
gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 2:1556844/1‑100 (MQ=255)
gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa < 2:775801/100‑1 (MQ=255)
gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 1:1472838/1‑100 (MQ=255)
gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 1:2394447/1‑100 (MQ=255)
gCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa < 2:3025539/100‑1 (MQ=255)
cAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCATGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGaa > 1:1457587/1‑100 (MQ=255)
aGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 1:668154/100‑1 (MQ=255)
aGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 1:3616515/100‑1 (MQ=255)
a‑aT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg < 2:3462058/100‑1 (MQ=255)
t‑t‑t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGAt > 1:591142/1‑100 (MQ=255)
t‑t‑t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGAt > 1:279712/1‑100 (MQ=255)
t‑t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATg < 2:3312742/100‑1 (MQ=255)
t‑‑‑tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGt < 2:2194126/100‑1 (MQ=255)
gTAGGCTTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 1:2662858/100‑1 (MQ=255)
gTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 1:2459902/100‑1 (MQ=255)
aGGCTTGATAAGCGGAGCGGATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGcc < 2:3110103/100‑1 (MQ=255)
ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGAGAtcggaagag > 2:799123/1‑92 (MQ=38)
CTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAAt > 1:287892‑M1/1‑100 (MQ=255)
CTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAAt < 1:2294402‑M1/100‑1 (MQ=255)
tGATAAGCGGATCGCATCAGGCATTTTTTTCTTTTTCTTCTCTCTTATATGACTTTTAATTATTCGATACAGACGTTTTCTCAGTGATGTTTGCCTAAt > 2:1805848/1‑99 (MQ=255)
GATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATgg < 1:3045446‑M1/100‑1 (MQ=255)
TAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGAt > 1:39681‑M1/1‑100 (MQ=255)
aaGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATc < 1:1691929/100‑1 (MQ=255)
aGCGGAGCGCATCAGGCATTTTTGTCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa < 1:3584991/100‑1 (MQ=255)
aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATTTTTGCCTAATGGATCa > 2:2489706/1‑100 (MQ=255)
aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa > 2:3583350/1‑100 (MQ=255)
|
TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑T‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACC > NC_000913/3705949‑3706146
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
