Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F200 I0 R1 101 105.4 5209919 94.4% 4918163 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,638,193:1 (C)6→7 100% coding (16/1353 nt) creD → inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,638,1871.C100.0% 404.2 / NA 114S4P (TCC→CCC) creDinner membrane protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (53/61);  total (53/61)

Only 100 of 129 total aligned reads displayed.

GCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTG  >  NC_000913/4638088‑4638280
                                                                                                    |                                                                                              
gCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAt                                                                                                 >  2:1966761/1‑100 (MQ=255)
gCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTAGCCTGCTGCCATTGCAAAGGAGAAGACCATGTTGAAAt                                                                                                 <  2:555524/100‑1 (MQ=255)
 ccTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑c                                                                                              >  1:1596876/1‑100 (MQ=255)
  cTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑cc                                                                                             <  2:195060/100‑1 (MQ=255)
  cTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑cc                                                                                             >  1:1404667/1‑100 (MQ=255)
   tCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑ccc                                                                                            <  2:2340744/100‑1 (MQ=255)
    cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑cccc                                                                                           <  2:1726401/100‑1 (MQ=255)
    cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑cccc                                                                                           >  1:2407991/1‑100 (MQ=255)
         cGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCGCATAGTCTTCGTATCCTGCTGCCACTGCAAAGGAGAAGACTATGTTGAAAT‑‑ccccccc                                                                                        <  2:1561120/98‑2 (MQ=255)
          gACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑ccccccctgt                                                                                     <  2:384281/100‑5 (MQ=255)
          gACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑ccccccctgt                                                                                     >  2:2299198/1‑96 (MQ=255)
          gACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑ccccccctgt                                                                                     >  2:2464572/1‑96 (MQ=255)
           ncTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑ccccccctgtt                                                                                    >  1:1066507/2‑95 (MQ=255)
            cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTc                                                                                    >  2:1046414/1‑100 (MQ=255)
              tCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTg                                                                                  >  2:484766/1‑100 (MQ=255)
               cACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTgg                                                                                 >  1:1368860/1‑100 (MQ=255)
               cACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTgg                                                                                 <  1:2469821/100‑1 (MQ=255)
                aCCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGa                                                                                >  2:2111112/1‑100 (MQ=255)
                aCCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGa                                                                                <  1:1966771/100‑1 (MQ=255)
                 ctgTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGaa                                                                               <  1:977627/98‑1 (MQ=255)
                  cGTTACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGaaa                                                                              <  2:815746/100‑1 (MQ=255)
                   gTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGaaag                                                                             >  2:977622/1‑99 (MQ=255)
                   gTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGaaaa                                                                             >  2:154717/1‑100 (MQ=255)
                    tCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAAt                                                                            <  1:490765/100‑1 (MQ=255)
                     cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATg                                                                           >  2:200719/1‑100 (MQ=255)
                      aCTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGa                                                                          <  1:1404205/100‑1 (MQ=255)
                      aCTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGa                                                                          >  2:710409/1‑100 (MQ=255)
                       cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGAc                                                                         <  1:1035262/100‑1 (MQ=255)
                        ttCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACt                                                                        <  2:455766/100‑1 (MQ=255)
                         tCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTa                                                                       <  2:1315228/100‑1 (MQ=255)
                         tCACATAGCTTCAAATTCTTCCCACATAGTCTTCATATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTa                                                                       <  2:594093/100‑1 (MQ=255)
                          cacaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAg                                                                      >  1:2594823/1‑100 (MQ=255)
                            caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGcc                                                                    >  2:819510/1‑100 (MQ=255)
                            caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCCGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGcc                                                                    <  2:1032599/100‑1 (MQ=255)
                              tAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTg                                                                  <  2:2063169/100‑1 (MQ=255)
                                gCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGtt                                                                <  1:1088042/100‑1 (MQ=255)
                                gCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGtt                                                                >  1:950968/1‑100 (MQ=255)
                                acTTCAAATTCTTCCAACATAGTCTTCGTATCCTGCTGACATTGCAAAGAAAAAGACTATATTGAAATC‑CCCCCCTATTATGGAAAATAACTa                                                                       >  2:1078529/2‑93 (MQ=255)
                                 cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                               >  1:2138297/1‑100 (MQ=255)
                                 cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                               >  1:379624/1‑100 (MQ=255)
                                  ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTg                                                              >  1:1411789/1‑100 (MQ=255)
                                     aaaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTg                                                           >  1:1142236/1‑100 (MQ=255)
                                     aaaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTg                                                           <  2:1539143/100‑1 (MQ=255)
                                      aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                          <  1:1446811/100‑1 (MQ=255)
                                      aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                          <  1:1185458/100‑1 (MQ=255)
                                        ttcttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAg                                                        <  1:1539089/100‑1 (MQ=255)
                                        ttcttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAg                                                        <  2:2122535/100‑1 (MQ=255)
                                          cttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTa                                                      >  2:197224/1‑100 (MQ=255)
                                          cttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTa                                                      <  1:1038546/100‑1 (MQ=255)
                                              ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTg                                                   <  2:23334/99‑1 (MQ=255)
                                              ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGc                                                  <  1:2132561/100‑1 (MQ=255)
                                               cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                                 >  2:1507818/1‑100 (MQ=255)
                                               cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                                 >  2:1639747/1‑100 (MQ=255)
                                               cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                                 >  1:1981537/1‑100 (MQ=255)
                                                acaTAGTCCTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtg                                                <  2:1263694/100‑1 (MQ=255)
                                                 caTAGTCTTCTTATCCTGCTGCCATTGCAAAGGAGAGGACTATGTTGACATC‑CCCCCCTGTTCTGGAGAATGACTAGCCTGTTTGGTGCAGTATTg                                                   <  2:2457581/96‑1 (MQ=255)
                                                 caTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGc                                                  <  2:520976/97‑1 (MQ=255)
                                                   tAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttg                                             <  2:1353937/100‑1 (MQ=255)
                                                   tAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttg                                             <  1:866199/100‑1 (MQ=255)
                                                   tAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttg                                             >  1:1283965/1‑100 (MQ=255)
                                                    aGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttgt                                            >  2:1573626/1‑100 (MQ=255)
                                                     gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                                           >  2:1785486/1‑100 (MQ=255)
                                                      tCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                                          <  1:2313183/100‑1 (MQ=255)
                                                       cTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGa                                         <  2:1715185/100‑1 (MQ=255)
                                                        ttCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAt                                        <  1:197226/100‑1 (MQ=255)
                                                        ttCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAt                                        <  1:2518974/100‑1 (MQ=255)
                                                           gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                     <  1:1655303/100‑1 (MQ=255)
                                                           gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                     <  2:1404660/100‑1 (MQ=255)
                                                           gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                     <  1:710414/100‑1 (MQ=255)
                                                              tCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGAt                                  <  1:1776658/100‑1 (MQ=255)
                                                               ccTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGCTa                                 >  2:2063960/1‑100 (MQ=255)
                                                                 tgctgcCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAAt                               <  1:1800345/100‑1 (MQ=255)
                                                                     gcCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTg                           >  1:205988/1‑100 (MQ=255)
                                                                     gcCATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTg                           >  2:400411/1‑100 (MQ=255)
                                                                       cATTGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                         >  2:2315283/1‑100 (MQ=255)
                                                                          tGCAAAGGAGAAGACTATGTTGAAATCCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTc                       >  2:2371217/1‑100 (MQ=255)
                                                                          tGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCg                      <  1:509769/100‑1 (MQ=255)
                                                                          tGCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCg                      <  2:1666193/100‑1 (MQ=255)
                                                                           gCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCgn                     <  2:1066502/100‑2 (MQ=255)
                                                                           gCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCgg                     >  1:1113147/1‑100 (MQ=255)
                                                                           gCAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTCCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTc                       >  2:2276274/1‑98 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    >  2:2028618/1‑100 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    <  1:493639/100‑1 (MQ=255)
                                                                              aaGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAg                  <  2:866154/100‑1 (MQ=255)
                                                                              aaGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGCTGCAGTATTGCGGTAGTAGATTCCGATAATGCTGATTCGGc                    >  2:839445/1‑98 (MQ=255)
                                                                               aGGAGAAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAgg                 <  1:731328/100‑1 (MQ=255)
                                                                                 gagaAGACTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg               >  2:908462/1‑100 (MQ=255)
                                                                                   gaagaCTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt             >  1:2126466/1‑100 (MQ=255)
                                                                                   gaagaCTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt             >  1:250866/1‑100 (MQ=255)
                                                                                     agaCTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTg           >  2:308595/1‑100 (MQ=255)
                                                                                        cTATGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCg        >  2:1917436/1‑100 (MQ=255)
                                                                                          aTGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGaa      <  2:949056/100‑1 (MQ=255)
                                                                                          aTGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGaa      >  2:1080256/1‑100 (MQ=255)
                                                                                           tGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAAc     <  1:400415/100‑1 (MQ=255)
                                                                                           tGTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAAc     <  1:392470/100‑1 (MQ=255)
                                                                                            gTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg    >  2:503869/1‑100 (MQ=255)
                                                                                            gTTGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg    >  1:850255/1‑100 (MQ=255)
                                                                                             ttGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCATTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGt   >  2:799418/1‑100 (MQ=255)
                                                                                              tGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGt   >  2:2112945/1‑99 (MQ=255)
                                                                                              tGAAATC‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTg  <  1:2333470/100‑1 (MQ=255)
                                                                                                    |                                                                                              
GCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTG  >  NC_000913/4638088‑4638280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A