Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F232 I1 R1 72 114.8 5816246 94.5% 5496352 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,638,193 (C)6→7 coding (16/1353 nt) creD → inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,638,1871.C95.5% 295.6 / 7.9 88coding (10/1353 nt)creDinner membrane protein
Reads supporting (aligned to +/- strand):  ref base . (3/1);  new base C (45/39);  total (48/40)
Fisher's exact test for biased strand distribution p-value = 6.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.81e-01

GCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTG  >  NC_000913/4638088‑4638280
                                                                                                    |                                                                                             
gCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAt                                                                                                >  2:401609/1‑100 (MQ=255)
gCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAt                                                                                                >  1:2823085/1‑100 (MQ=255)
gCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAt                                                                                                >  1:2206742/1‑100 (MQ=255)
gCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAt                                                                                                >  1:1996204/1‑100 (MQ=255)
   tCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccc                                                                                            <  2:1629638/100‑1 (MQ=255)
    cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑cccc                                                                                           <  2:720925/100‑1 (MQ=255)
    cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑cccc                                                                                           <  2:750469/100‑1 (MQ=255)
     gCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccc                                                                                          >  1:1059341/1‑100 (MQ=255)
       ttCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccc                                                                                        <  2:1359460/100‑2 (MQ=255)
       ttCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccc                                                                                        <  2:1522718/100‑2 (MQ=255)
         cGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAACGGAGAAGACTATGTTGAAAT‑CCCCCCTGt                                                                                      >  1:2301676/1‑100 (MQ=255)
           aCTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccctgtt                                                                                    >  2:1447330/1‑95 (MQ=255)
           aCTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccctgtt                                                                                    >  2:2665734/1‑95 (MQ=255)
             ttCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCt                                                                                   <  2:2717171/100‑1 (MQ=255)
              tcgccGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTg                                                                                  <  2:124915/97‑1 (MQ=255)
              tCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTTCAAAGTAGAAGACTATGTGGAAATCCCCCCCTGTTCTg                                                                                  <  1:1666321/100‑1 (MQ=255)
               cACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTgg                                                                                 >  2:1601183/1‑100 (MQ=255)
                   gTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGaaaa                                                                             <  2:2617980/100‑1 (MQ=255)
                     cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATg                                                                           <  1:2709001/100‑1 (MQ=255)
                     cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATg                                                                           <  1:737994/100‑1 (MQ=255)
                     cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATg                                                                           <  2:2250898/100‑1 (MQ=255)
                     cACTTCACATACATTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATg                                                                           <  1:1761807/100‑1 (MQ=255)
                       cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGAc                                                                         >  2:1027714/1‑100 (MQ=255)
                        ttCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACt                                                                        <  1:2843358/100‑1 (MQ=255)
                        ttCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACt                                                                        >  1:829798/1‑100 (MQ=255)
                         tCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCCCCCTGTTCTGGAAAATGACTAg                                                                      >  1:2608319/1‑100 (MQ=255)
                          cacaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAg                                                                      >  2:2155916/1‑100 (MQ=255)
                           acaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGc                                                                     >  2:1340089/1‑100 (MQ=255)
                            caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGcc                                                                    >  2:2890465/1‑100 (MQ=255)
                            caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGcc                                                                    <  2:1482813/100‑1 (MQ=255)
                              tAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTg                                                                  <  1:2074125/100‑1 (MQ=255)
                              tAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTg                                                                  <  2:482594/100‑1 (MQ=255)
                                 cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                               >  1:1116432/1‑100 (MQ=255)
                                 cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                               <  1:364828/100‑1 (MQ=255)
                                 cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                               >  1:402094/1‑100 (MQ=255)
                                   tCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTgg                                                             >  1:510020/1‑100 (MQ=255)
                                      aaTTCTTCCCACATAGTCTTGGCATCCTGCTGCCATTTCAAAGGAGAGGACGATGTGGAAATCCCCCCCTGTTCTGTAAAATGACTAGCCTGTGTGGTGc                                                          >  1:1693051/1‑100 (MQ=255)
                                      aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                          <  1:1867472/100‑1 (MQ=255)
                                      aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                          <  1:675746/100‑1 (MQ=255)
                                       aTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                          <  1:1719201/99‑1 (MQ=255)
                                          cttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTa                                                      >  2:824269/1‑100 (MQ=255)
                                            tcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTAtt                                                    >  2:693792/1‑100 (MQ=255)
                                             cccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTg                                                   >  2:2174911/1‑100 (MQ=255)
                                              ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGc                                                  >  1:398476/1‑100 (MQ=255)
                                              ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGc                                                  >  1:664854/1‑100 (MQ=255)
                                               nacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                                 >  1:158201/2‑100 (MQ=255)
                                               cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                                 >  2:71124/1‑100 (MQ=255)
                                               cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                                 >  1:421156/1‑100 (MQ=255)
                                               cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGACTGTTTGGTGCAGGATTg                                                   >  1:358122/1‑98 (MQ=255)
                                                acaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtg                                                >  2:1397594/1‑100 (MQ=255)
                                                acaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtg                                                <  1:666394/100‑1 (MQ=255)
                                                acaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtg                                                >  2:2507603/1‑100 (MQ=255)
                                                  aTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttg                                             >  1:1874228/1‑100 (MQ=255)
                                                     gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                                           >  2:1383626/1‑100 (MQ=255)
                                                     gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                                           >  1:2610380/1‑100 (MQ=255)
                                                     gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                                           <  1:978062/100‑1 (MQ=255)
                                                      tCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                                          <  1:1601158/100‑1 (MQ=255)
                                                       cTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGa                                         >  2:2153689/1‑100 (MQ=255)
                                                        ttCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATATTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAt                                        <  2:2042664/100‑1 (MQ=255)
                                                         tCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAtt                                       >  1:1704269/1‑100 (MQ=255)
                                                          cGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGACTGTTTGGTGCAGTATTGCTGTTGTTGATTc                                      >  1:2169394/1‑100 (MQ=255)
                                                           gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                     >  1:1477023/1‑100 (MQ=255)
                                                           gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                     >  2:2703596/1‑100 (MQ=255)
                                                            tATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCg                                    <  1:2526772/100‑1 (MQ=255)
                                                                    tgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt                            <  1:2201457/100‑1 (MQ=255)
                                                                     gcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTg                           <  1:825476/100‑1 (MQ=255)
                                                                     gcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTACTGCTGTTGTTGATTCCGATAATGCTg                           >  2:1477622/1‑100 (MQ=255)
                                                                       cATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                         <  2:1683138/100‑1 (MQ=255)
                                                                          tGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCg                      >  2:2604626/1‑100 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    >  1:1570330/1‑100 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    <  2:2796085/100‑1 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    <  2:2792939/100‑1 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    >  1:15558/1‑100 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    <  1:2884433/100‑1 (MQ=255)
                                                                            cAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc                    >  1:2882693/1‑100 (MQ=255)
                                                                              aaGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAg                  >  1:1404629/1‑100 (MQ=255)
                                                                              aaGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAg                  >  1:2802818/1‑100 (MQ=255)
                                                                                ggAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                <  2:2084765/100‑1 (MQ=255)
                                                                                ggAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                >  2:1274657/1‑100 (MQ=255)
                                                                                ggAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                >  2:1148172/1‑100 (MQ=255)
                                                                                ggAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                >  1:2091800/1‑100 (MQ=255)
                                                                                 gagaAGACTATGTTGAGATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg               <  1:208122/100‑1 (MQ=255)
                                                                                 gagaAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg               <  1:1993069/100‑1 (MQ=255)
                                                                                 gagaAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg               >  1:2192433/1‑100 (MQ=255)
                                                                                   gaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt             >  2:800223/1‑100 (MQ=255)
                                                                                   gaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt             >  1:1500979/1‑100 (MQ=255)
                                                                                   gaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt             >  1:1422701/1‑100 (MQ=255)
                                                                                   gaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt             <  1:1340071/100‑1 (MQ=255)
                                                                                       aCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTc         <  2:2806516/100‑1 (MQ=255)
                                                                                       aCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTc         <  2:509619/100‑1 (MQ=255)
                                                                                       aCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTc         >  2:1446982/1‑100 (MQ=255)
                                                                                       aCTATGTTGAAAT‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCg        <  2:2608352/100‑1 (MQ=255)
                                                                                        cTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCg        <  2:2706264/100‑1 (MQ=255)
                                                                                         tATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGa       <  1:401604/100‑1 (MQ=255)
                                                                                           tGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAAc     <  2:664860/100‑1 (MQ=255)
                                                                                            gTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg    >  1:1060359/1‑100 (MQ=255)
                                                                                            gTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg    <  2:2206769/100‑1 (MQ=255)
                                                                                            gTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg    <  1:292185/100‑1 (MQ=255)
                                                                                              tGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTg  >  2:1859558/1‑100 (MQ=255)
                                                                                              tGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTg  <  2:829804/100‑1 (MQ=255)
                                                                                                    |                                                                                             
GCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTG  >  NC_000913/4638088‑4638280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A