Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F181 I1 R1 66 119.2 5981814 94.9% 5676741 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,638,193 (C)6→7 coding (16/1353 nt) creD → inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,638,1871.C100.0% 420.1 / NA 114S4P (TCC→CCC) creDinner membrane protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (53/61);  total (53/61)

Only 100 of 124 total aligned reads displayed.

CGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC  >  NC_000913/4638092‑4638281
                                                                                                |                                                                                              
cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑cccc                                                                                            >  1:1022792/1‑100 (MQ=255)
 gCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccc                                                                                           <  2:354600/100‑1 (MQ=255)
  cTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCACTTCAAAGGAGAAGACTATGTTGAAAT‑cccccc                                                                                          >  2:2548317/1‑100 (MQ=255)
   ttCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccc                                                                                         <  2:1266280/100‑2 (MQ=255)
    tCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccct                                                                                        <  2:1288692/100‑3 (MQ=255)
      gACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGATAAGACTATGTTGAAAT‑ccccccctgt                                                                                      <  1:1821827/100‑5 (MQ=255)
      gACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccctgt                                                                                      >  2:2487270/1‑96 (MQ=255)
       aCTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccccccctgtt                                                                                     >  1:1691780/1‑95 (MQ=255)
        cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTc                                                                                     <  2:1854276/100‑1 (MQ=255)
          tCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTg                                                                                   <  2:613384/100‑1 (MQ=255)
           cacctgcACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTg                                                                                   <  1:2790958/93‑1 (MQ=255)
           cACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTgg                                                                                  >  2:2251721/1‑100 (MQ=255)
           cACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTgg                                                                                  <  1:2656917/100‑1 (MQ=255)
            aCCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGa                                                                                 <  1:2585122/100‑1 (MQ=255)
                 cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATg                                                                            <  1:2204760/100‑1 (MQ=255)
                   cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGAc                                                                          >  1:528981/1‑100 (MQ=255)
                   cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGAc                                                                          >  1:291189/1‑100 (MQ=255)
                   cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGAc                                                                          >  2:2541792/1‑100 (MQ=255)
                   cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGAc                                                                          >  2:476978/1‑100 (MQ=255)
                    ttCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACt                                                                         <  1:279180/100‑1 (MQ=255)
                      cacaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAg                                                                       >  1:1305560/1‑100 (MQ=255)
                        caTCGCTTCAAATTCTTCCCACATAGTCTTCGGATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGcc                                                                     <  2:2335610/100‑1 (MQ=255)
                        caTAGCTTCAAATTCTTCCCCCATAGTCTTCGTATCCTGCTGTCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGcc                                                                     <  2:271638/100‑1 (MQ=255)
                        caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGcc                                                                     >  1:1331105/1‑100 (MQ=255)
                        caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGcc                                                                     <  1:1588499/100‑1 (MQ=255)
                             cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                                <  2:1316811/100‑1 (MQ=255)
                              ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAACGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTg                                                               >  1:444758/1‑100 (MQ=255)
                               tCATATACTTCCCACATAGTCTTCGTATCCTGCTGCCATTCCAAAGGAGAAGTCTATGTGGAAATCCCCCCCTGTACTGGAAAATGACTAGCCTGTTTgg                                                              <  2:1162578/100‑1 (MQ=255)
                               tCAAATTCTTCCCCCATAGTCTTCGTATCCTGCTGCCATTGCCACGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGAATAGCCtaatt                                                                >  2:731807/1‑94 (MQ=255)
                                cAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGt                                                             <  2:389961/100‑1 (MQ=255)
                                cAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGt                                                             <  1:1615164/100‑1 (MQ=255)
                                 aaaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTg                                                            >  1:1767490/1‑100 (MQ=255)
                                  aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                           <  1:22612/100‑1 (MQ=255)
                                  aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                           >  2:1388447/1‑100 (MQ=255)
                                  aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                           <  2:1767479/100‑1 (MQ=255)
                                  aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                           <  2:1276276/100‑1 (MQ=255)
                                  aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                                           <  2:1158006/100‑1 (MQ=255)
                                         cccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTg                                                    >  2:936476/1‑100 (MQ=255)
                                          ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGc                                                   <  2:1103399/100‑1 (MQ=255)
                                          ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGc                                                   <  2:2743400/100‑1 (MQ=255)
                                           cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                                  >  1:1927273/1‑100 (MQ=255)
                                             caTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgt                                                >  1:2537034/1‑100 (MQ=255)
                                              aTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgtt                                               <  2:229016/100‑1 (MQ=255)
                                                aGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttgt                                             <  2:1388044/100‑1 (MQ=255)
                                                aGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttgt                                             >  2:2403990/1‑100 (MQ=255)
                                                 gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                                            >  2:1994774/1‑100 (MQ=255)
                                                 gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                                            <  2:834106/100‑1 (MQ=255)
                                                  tCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                                           <  1:1368704/100‑1 (MQ=255)
                                                  tCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                                           <  2:1644923/100‑1 (MQ=255)
                                                     tCGTATCCTGCTGCCATTGCAAAGGAGAAGAATATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGATGTTGTTGAtt                                        >  2:1021432/1‑100 (MQ=255)
                                                       gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                      <  2:2033104/100‑1 (MQ=255)
                                                       gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                      >  1:946719/1‑100 (MQ=255)
                                                       gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                      <  2:1948624/100‑1 (MQ=255)
                                                        tATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCg                                     >  2:1719303/1‑100 (MQ=255)
                                                         aTCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGa                                    <  2:1435248/100‑1 (MQ=255)
                                                         aTCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGa                                    >  1:1001600/1‑100 (MQ=255)
                                                          tCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGAt                                   <  1:772002/100‑1 (MQ=255)
                                                            ctgctgCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATaa                                 <  1:1997985/100‑1 (MQ=255)
                                                            ctgctgCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATaa                                 <  1:1667268/100‑1 (MQ=255)
                                                            ctgctgCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATaa                                 >  2:860807/1‑100 (MQ=255)
                                                              gctgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATg                               <  1:2602228/100‑1 (MQ=255)
                                                               ctgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGc                              <  1:212819/100‑1 (MQ=255)
                                                               ctgcCATTGCAAAGGAGAAGACTATGATGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGc                              <  1:1077461/100‑1 (MQ=255)
                                                                tgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt                             <  1:651856/100‑1 (MQ=255)
                                                                 gcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTg                            >  2:1937813/1‑100 (MQ=255)
                                                                 gcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTg                            >  2:2060563/1‑100 (MQ=255)
                                                                  ccATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGa                           >  2:2060202/1‑100 (MQ=255)
                                                                   cATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                          <  2:1118729/100‑1 (MQ=255)
                                                                   cATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                          >  2:761117/1‑100 (MQ=255)
                                                                   cATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                          >  2:893443/1‑100 (MQ=255)
                                                                   cATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                          <  2:1894429/100‑1 (MQ=255)
                                                                    aTTGCAAAGGAGAAGTCTATGTTGAAATCCCCCCCTGTTCTGGAAAGTGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                          <  2:246748/99‑1 (MQ=255)
                                                                    aTTGCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                          <  2:2429395/99‑1 (MQ=255)
                                                                       gCAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCgg                      >  2:2828643/1‑100 (MQ=255)
                                                                        cAAAGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTGGGc                     >  1:1857826/1‑100 (MQ=255)
                                                                         aaaGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa                    <  1:2251733/100‑1 (MQ=255)
                                                                          aaGGAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAg                   <  1:731810/100‑1 (MQ=255)
                                                                            ggAGAAGACTATGTTGAAGTCCCCCCCTGTTCGGGAAAAGGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                 <  2:1008241/100‑1 (MQ=255)
                                                                            ggAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                 >  1:2362498/1‑100 (MQ=255)
                                                                            ggAGAAGACTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                 >  2:2452642/1‑100 (MQ=255)
                                                                              agaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGa               >  1:2029922/1‑100 (MQ=255)
                                                                               gaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt              >  2:2189560/1‑100 (MQ=255)
                                                                               gaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt              >  1:1944062/1‑100 (MQ=255)
                                                                               gaagaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAt              <  1:25183/100‑1 (MQ=255)
                                                                                 agaCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTg            >  1:1974551/1‑100 (MQ=255)
                                                                                   aCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTc          <  2:2537019/100‑1 (MQ=255)
                                                                                   aCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTc          <  1:2541807/100‑1 (MQ=255)
                                                                                   aCTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTc          >  2:420335/1‑100 (MQ=255)
                                                                                    cTATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCg         >  1:1443480/1‑100 (MQ=255)
                                                                                     tATGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGa        <  2:678951/100‑1 (MQ=255)
                                                                                       tGTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAAc      >  2:2555770/1‑100 (MQ=255)
                                                                                        gTTGAAATCCCCCCCTGTTCTGTAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg     >  2:1733370/1‑100 (MQ=255)
                                                                                        gTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg     <  1:2584020/100‑1 (MQ=255)
                                                                                        gTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg     >  1:1125416/1‑100 (MQ=255)
                                                                                        gTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg     <  1:420337/100‑1 (MQ=255)
                                                                                        gTTGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACg     >  2:1199453/1‑100 (MQ=255)
                                                                                         ttGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGt    <  2:1001595/100‑1 (MQ=255)
                                                                                         ttGAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGt    <  2:1502756/100‑1 (MQ=255)
                                                                                           gAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGc  >  2:2677660/1‑100 (MQ=255)
                                                                                           gAAATCCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGc  <  1:5053/100‑1 (MQ=255)
                                                                                                |                                                                                              
CGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC  >  NC_000913/4638092‑4638281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A