Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F244 I0 R1 270 114.4 5840133 93.3% 5448844 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,705,970 G→A 25.9% intergenic (‑180/+128) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,705,9700GA25.9% 354.7 / 123.1 186intergenic (‑180/+128)dppB/dppAdipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
Reads supporting (aligned to +/- strand):  ref base G (62/75);  new base A (41/7);  total (103/83)
Fisher's exact test for biased strand distribution p-value = 1.26e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.63e-02

Only 100 of 196 total aligned reads displayed.

CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTG  >  NC_000913/3705871‑3706067
                                                                                                   |                                                                                                     
cAGGGAATAAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCAAAGCGCGACCGGGTATACAGATTGTTGACAAAGTGCGCCTTGTTTATGCCGGATg                                                                                                       >  1:948014/1‑100 (MQ=38)
 aGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgc                                                                                                      <  2:2458835/100‑1 (MQ=255)
  gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg                                                                                                     >  2:2674019/1‑100 (MQ=255)
  gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg                                                                                                     >  2:2238040/1‑100 (MQ=255)
    gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc                                                                                                   <  2:1098942/100‑1 (MQ=255)
    gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGGATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc                                                                                                   <  1:147863/100‑1 (MQ=255)
       tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt                                                                                                <  1:1649064/100‑1 (MQ=255)
            tATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGc                                                                                           <  2:1852487/100‑1 (MQ=255)
              ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt                                                                                         <  1:695315/100‑1 (MQ=255)
               tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt                                                                                        >  1:269617/1‑100 (MQ=255)
                gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt                                                                                         >  1:1340217/1‑98 (MQ=255)
                  tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGCCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc                                                                                     >  2:792327/1‑100 (MQ=255)
                  tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc                                                                                     >  2:314627/1‑100 (MQ=255)
                  tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc                                                                                     <  1:1258918/100‑1 (MQ=255)
                  tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc                                                                                     >  1:1907045/1‑100 (MQ=255)
                   gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATca                                                                                    >  2:1258923/1‑99 (MQ=255)
                   gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCCTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc                                                                                    >  1:1397792/1‑100 (MQ=255)
                    ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGccgcatccg                                                                                   <  2:1512444/100‑8 (MQ=255)
                     cGGATGGCGCTGCACGCAGAGAAAAAACGCCACCGGGTATACAGATTGTTGACAACATGCGCTTTGTTTATGCAGGATGAGGCGTTAACGCCTTATCCg                                                                                   >  1:2661478/1‑99 (MQ=21)
                        aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt                                                                               <  2:1809887/100‑1 (MQ=255)
                         tGGCGCTGCACGCGGAGGCACAGCGCCTCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTGTATGCCGGATAAGTCGTTAACGCCGCATCCGGcat                                                                               <  1:872582/99‑3 (MQ=25)
                         tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa                                                                              <  2:2031025/100‑1 (MQ=255)
                             gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaaca                                                                          <  1:1596315/100‑8 (MQ=25)
                             gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaac                                                                           <  1:57725/99‑7 (MQ=25)
                              cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaa                                                                         <  2:1539336/100‑9 (MQ=25)
                               tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaagt                                                                       >  1:1770645/1‑98 (MQ=255)
                                gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa                                                                        <  2:2700685/98‑1 (MQ=255)
                                gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc                                                                      >  1:1431514/1‑100 (MQ=255)
                                gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc                                                                      >  2:1597978/1‑100 (MQ=255)
                                 cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg                                                                     <  1:2502866/100‑1 (MQ=255)
                                 cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg                                                                     <  2:1124983/100‑1 (MQ=255)
                                   cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg                                                                   <  2:468938/100‑1 (MQ=255)
                                    gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc                                                                  <  1:1515062/100‑1 (MQ=255)
                                       gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaaa                                                               <  1:1084670/100‑1 (MQ=255)
                                         ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt                                                             >  2:212578/1‑100 (MQ=255)
                                           cactGCGCCACCTGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTACCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa                                                           <  1:771489/100‑1 (MQ=255)
                                           cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc                                                            <  1:1305625/99‑1 (MQ=255)
                                           cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa                                                           <  1:2710089/100‑1 (MQ=255)
                                             caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt                                                         <  1:603119/100‑1 (MQ=255)
                                             caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATGGTGCAAATTCa                                                           >  1:1228583/1‑98 (MQ=255)
                                                 gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc                                                       <  1:334449/98‑1 (MQ=255)
                                                  ccACCGGGTATAAAGATTGTTGACAAAGTGCGCTTTGTTTCTGACAGATTCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGTAAATTCCATACAta                                                    <  1:1736197/100‑2 (MQ=17)
                                                    aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTCTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc                                                  <  2:2373314/100‑1 (MQ=255)
                                                       gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g                                               >  2:1586866/1‑99 (MQ=255)
                                                            taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAtttt                                         >  2:1487690/1‑100 (MQ=255)
                                                             aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTc                                        <  1:2169490/100‑1 (MQ=255)
                                                              cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑g                                     >  2:2756466/1‑100 (MQ=255)
                                                                gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑Gt                                    <  1:223993/99‑1 (MQ=255)
                                                                gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTa                                   <  1:1719291/100‑1 (MQ=255)
                                                                gATTGTTGACAAAGTGCGCTTTGTTAATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATGCAATACATTGCA‑GAATTTTC‑‑GTa                                   <  1:2360340/100‑1 (MQ=255)
                                                                gATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGCA‑Gatcggaagag                                     >  1:544808/1‑91 (MQ=14)
                                                                 ttccgatctaaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAg                                  <  1:1174405/91‑1 (MQ=255)
                                                                    gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGcc                               <  1:105792/100‑1 (MQ=255)
                                                                    gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGcc                               <  1:2887420/100‑1 (MQ=255)
                                                                    ataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGcc                               >  1:941227/5‑100 (MQ=18)
                                                                      tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCCTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTg                             <  1:1871453/100‑1 (MQ=255)
                                                                        aCAAAGTCCGCTTTGTTTATGCCGGATGCGGCCTTAACGCCTTATCCGGCCTAC‑AAAATCGTTCAAAGTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGAt                           <  1:2857788/100‑1 (MQ=18)
                                                                         cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATa                          <  2:922526/100‑1 (MQ=255)
                                                                         cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATa                          >  2:1687996/1‑100 (MQ=255)
                                                                          aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAgagatcggaa                         >  2:1174410/1‑91 (MQ=255)
                                                                           aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAg                        <  1:427662/100‑1 (MQ=255)
                                                                           aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAg                        <  2:685317/100‑1 (MQ=255)
                                                                             gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCg                      <  1:2072705/100‑1 (MQ=255)
                                                                              tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCgg                     <  1:1544549/100‑1 (MQ=255)
                                                                               gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCgg                     >  2:208679/1‑99 (MQ=255)
                                                                                  cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcg                 >  2:868241/1‑100 (MQ=255)
                                                                                   attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcgc                >  2:2897912/10‑100 (MQ=18)
                                                                                    ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa               <  2:2104916/100‑1 (MQ=255)
                                                                                     tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt              <  2:1546142/100‑1 (MQ=255)
                                                                                      gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc             >  2:1949783/1‑100 (MQ=255)
                                                                                       tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa            <  2:972948/100‑1 (MQ=255)
                                                                                       tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa            <  1:2011353/100‑1 (MQ=255)
                                                                                       tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa            <  2:1834948/100‑1 (MQ=255)
                                                                                         taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg          >  2:2916430/4‑100 (MQ=17)
                                                                                         taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg           >  1:2308767/4‑99 (MQ=17)
                                                                                         tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg          >  2:21231/1‑100 (MQ=255)
                                                                                         tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGACTGATAAGCGGAGCGCATCAgg          >  1:1303748/1‑100 (MQ=255)
                                                                                          aggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCA‑GAAATCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc         >  2:2316765/3‑100 (MQ=18)
                                                                                          aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc         >  1:2207421/3‑100 (MQ=18)
                                                                                          aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCTTGTG‑‑GTAGGCGTGATAAGCATCGCGCATCAGGc         >  1:1965053/3‑100 (MQ=18)
                                                                                          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc         >  2:1385275/3‑100 (MQ=18)
                                                                                          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATAGATTGCA‑CCATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc         >  1:1860045/3‑100 (MQ=18)
                                                                                          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAGCTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc         >  2:2176140/3‑100 (MQ=17)
                                                                                          aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc         >  2:1024208/3‑100 (MQ=18)
                                                                                          aTGCGGGATGCGGCGTGAACGGCTTATCCGGCCTAC‑AAAGTCGTATAAATTCTATGTATTGCA‑GTTTATTG‑‑GTAGGCCTGATGCGCTGCGCTTATCAGGc         <  1:1069460/100‑1 (MQ=21)
                                                                                          aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc         >  2:1792401/1‑100 (MQ=255)
                                                                                           tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCGGATAAGCGGAGCGCATCAGGCa        <  1:1687989/100‑1 (MQ=255)
                                                                                           ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGGGCCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa        >  2:2629565/2‑100 (MQ=17)
                                                                                           ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAGCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa        >  2:2806443/2‑100 (MQ=17)
                                                                                           ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa        >  2:822297/2‑100 (MQ=25)
                                                                                           ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa        >  2:2240492/2‑100 (MQ=18)
                                                                                           ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa        >  2:1998113/2‑100 (MQ=18)
                                                                                           ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa        >  1:2453599/2‑100 (MQ=18)
                                                                                           ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt       >  2:646790/2‑100 (MQ=21)
                                                                                            gCCGGATAAGGCGTTCGCGCCGCATCCGGCCTAC‑AACAGTTTGCAAATTCAATAAATTGCA‑GAATTCAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAt       >  1:2865696/1‑100 (MQ=17)
                                                                                            gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag       >  2:1312645/1‑99 (MQ=18)
                                                                                            gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt       >  2:391517/1‑100 (MQ=18)
                                                                                             ccGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCA‑GAAATCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat      >  1:471559/1‑98 (MQ=18)
                                                                                                 acgcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg  <  2:1864962/98‑1 (MQ=255)
                                                                                                  tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg  <  2:1107043/99‑1 (MQ=255)
                                                                                                   |                                                                                                     
CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTG  >  NC_000913/3705871‑3706067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A