Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F244 I0 R1
|
270 |
114.4 |
5840133 |
93.3% |
5448844 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,326,047 |
C→T |
80.5% |
intergenic (‑306/+352) |
yjdN ← / ← yjdM |
metalloprotein superfamily protein/zinc‑ribbon family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,326,047 | 0 | C | T | 80.5%
| 405.4
/ 137.3
| 293 | intergenic (‑306/+352) | yjdN/yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Reads supporting (aligned to +/- strand): ref base C (15/42); new base T (102/132); total (117/176) |
| Fisher's exact test for biased strand distribution p-value = 2.33e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.63e-01 |
Only 100 of 294 total aligned reads displayed.
GGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA > NC_000913/4325989‑4326145
|
ggTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAt < 2:2010293/100‑1 (MQ=11)
gTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATg < 2:1453528/100‑1 (MQ=14)
gTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATg > 2:707473/1‑100 (MQ=14)
gCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGt < 2:2526359/100‑1 (MQ=17)
cGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATgggg > 1:1485421/1‑98 (MQ=9)
cGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATggag > 1:841407/1‑98 (MQ=9)
cGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGCGAACGCCTTATCCGGCCTACCGAtcac > 1:52216/1‑96 (MQ=11)
gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGc > 2:673275/1‑100 (MQ=17)
gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATg > 2:2270819/1‑96 (MQ=31)
ggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCg > 2:2468281/1‑100 (MQ=14)
cagtgccaactgcctgatgcgacgcttgcgcgtcttATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCg < 1:1651264‑M1/64‑1 (MQ=255)
aagatcgTAGGCCTGATAAGACGCGCAAGCGTCGCATCAAGAAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTAATCCGGCCTACAGATGGTGCgt < 1:1171779/94‑2 (MQ=11)
aaTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCggg < 1:2715451/100‑1 (MQ=33)
gccgactgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGCATGGtgccg < 1:176152‑M1/65‑3 (MQ=255)
ccgatctgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGaa > 2:581641‑M1/33‑100 (MQ=255)
ccgactgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGAAt < 1:2024096‑M1/69‑1 (MQ=255)
ccgactgcctgatgcgacgctcgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAt < 2:2207361‑M1/69‑1 (MQ=255)
tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAAtt < 1:2294312/100‑1 (MQ=18)
tGTAGGCCTGATAAGACGCGCAAGCGGCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCTGGCCTACGGATGGTGCGGGAAt < 1:1685319/99‑1 (MQ=11)
cgactgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAAt < 1:511840‑M1/69‑1 (MQ=255)
gactgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAAttt < 2:1873924‑M1/71‑1 (MQ=255)
gactgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:733893‑M1/71‑1 (MQ=255)
gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAAttt < 2:2517288/100‑1 (MQ=18)
tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTg < 2:1543539/100‑1 (MQ=17)
tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTg < 2:1101752/100‑1 (MQ=18)
ctgcctgatgcgacgcttgcgcgtcttATCAGGCCGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGAGGGTGCGGGAACTTGt < 1:2530970‑M1/73‑1 (MQ=255)
ctgcctgatgcgacgcttgcgcgtcttATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt < 2:2666479‑M1/73‑1 (MQ=255)
ctgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgggggcggggaattg < 1:2414460‑M1/72‑7 (MQ=255)
ctgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt < 2:1282902‑M1/73‑1 (MQ=255)
aGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGt > 2:1675283/1‑100 (MQ=17)
aGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGt > 2:847899/1‑100 (MQ=18)
tgcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTa < 2:234079‑M1/74‑1 (MQ=255)
ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGGATTTGt > 1:1565552/1‑99 (MQ=12)
ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTa < 1:1983252/100‑1 (MQ=18)
ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTa > 1:2825968/1‑100 (MQ=14)
ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTa > 2:2769449/1‑100 (MQ=18)
gcctgatgcgacgcttgcgcgtcttATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg < 2:319167‑M1/75‑1 (MQ=255)
gcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGGCTACGGATGGCGCGGGAatgtgttg < 2:1901084‑M1/75‑3 (MQ=255)
gcctgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtttggag < 1:566656‑M1/75‑4 (MQ=255)
gactgatgcgacgattgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAg < 2:1976742‑M1/75‑1 (MQ=255)
ccagATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAgg < 1:1429962/97‑1 (MQ=16)
ccTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTTTAgg > 2:1789061/1‑100 (MQ=9)
ccTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAgg < 2:1233449/100‑1 (MQ=17)
cTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGc < 2:1013323/100‑1 (MQ=18)
tgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGcc < 1:372300‑M1/78‑1 (MQ=255)
tgatgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc < 2:1407616‑M1/78‑1 (MQ=255)
tGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGcc < 2:1144610/100‑1 (MQ=18)
atgcgacgcttgcgcgtcgcATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTg < 2:158169‑M1/80‑1 (MQ=255)
aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTg > 1:2914503/1‑100 (MQ=14)
aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTg < 2:1619525/100‑1 (MQ=18)
tgcgacgcttgcgcgtcttATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGa < 2:287618‑M1/81‑1 (MQ=255)
tAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGa > 1:2512028/1‑100 (MQ=32)
aaGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGAt < 2:837546/100‑1 (MQ=18)
aaGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGAt > 2:798995/1‑100 (MQ=17)
aGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGGATTTGTAGGCCTGATa > 1:779653/1‑100 (MQ=12)
aGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATa < 2:90540/100‑1 (MQ=17)
aGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATa < 2:77863/100‑1 (MQ=18)
aGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATa < 2:2598600/100‑1 (MQ=33)
aGAAGCGCAAGCGGCGCGTCAGGCGGTCGGCACTGTTGCCGGATGTGGCGTAAACGCTTTCTCCGGCCTACGGATGGGGCGGGAATTTGTAGGcc < 1:908577/95‑1 (MQ=11)
gACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATaa > 2:448836/1‑100 (MQ=17)
gACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATaa > 1:1276860/1‑100 (MQ=17)
gACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATaa < 1:2751497/100‑1 (MQ=18)
gACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATaa > 2:613708/1‑100 (MQ=18)
gACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATaa < 1:2669497/100‑1 (MQ=18)
gACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATa < 1:1373984/99‑1 (MQ=18)
cgcgCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGTGGTGCGGGAATTTGTCGGCCTGTTAAg > 1:1963756/1‑99 (MQ=11)
cgcgCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGTTGCGGGAATTTGTAGGCCTGATAAGa > 2:212868/1‑100 (MQ=12)
cgcgCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGa > 2:1180825/1‑100 (MQ=17)
cgcgCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGa > 2:1856386/1‑100 (MQ=17)
cgcgCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTTGTCCTGATAAGa > 1:611068/1‑100 (MQ=11)
gcgcAAGCGTCGCATCAGTCAGTCCGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAc < 1:2061536/100‑1 (MQ=255)
gcgcAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAc < 2:2726764/100‑1 (MQ=17)
gcgcAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGa > 2:1321350/1‑99 (MQ=33)
gcgcAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAc > 2:2505144/1‑100 (MQ=33)
cttgcgcgtcttATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTGTAGGCCTGATAAGAc < 1:2863425‑M1/87‑1 (MQ=255)
cgcAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAcg < 1:2084485/100‑1 (MQ=18)
gcAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAcgc > 1:2215031/1‑100 (MQ=17)
gcAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAcgc > 2:1153261/1‑100 (MQ=14)
gcAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAcg < 1:2332746/99‑1 (MQ=18)
cAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAcgcg > 2:2218667/1‑100 (MQ=11)
aaGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGAcgcg > 2:1377116/1‑99 (MQ=1)
aaGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACgcgc < 2:2350226/100‑1 (MQ=1)
gCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTc < 1:1046943/100‑1 (MQ=32)
ATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCg > 1:2138537‑M1/1‑99 (MQ=255)
ATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGc > 2:2420542‑M1/1‑100 (MQ=255)
ATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGc > 2:556423‑M1/1‑100 (MQ=255)
AGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATc < 1:111487‑M1/100‑1 (MQ=255)
AGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATc < 1:2315890‑M1/100‑1 (MQ=255)
GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCGTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa < 2:2053631‑M1/100‑1 (MQ=255)
GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGGTAGAACGCGCAGGCGGCGCATc < 1:1189037‑M1/99‑1 (MQ=255)
GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa > 2:2835434‑M1/1‑100 (MQ=255)
GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa > 2:2397123‑M1/1‑100 (MQ=255)
GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa < 2:1843475‑M1/100‑1 (MQ=255)
GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa < 2:1513981‑M1/100‑1 (MQ=255)
GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAACGTCGCATCa < 1:1915355‑M1/100‑1 (MQ=255)
GCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg > 2:1275227‑M1/1‑100 (MQ=255)
gCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTg > 2:958226/1‑100 (MQ=17)
gCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATTTg > 2:482014/1‑100 (MQ=18)
cACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTgg > 2:2033706/1‑100 (MQ=17)
cACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTgg < 1:593668/100‑1 (MQ=17)
|
GGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCA > NC_000913/4325989‑4326145
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
