Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F255 I1 R1
|
77 |
120.7 |
6116409 |
93.2% |
5700493 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,595,273 |
Δ1 bp |
coding (208/1278 nt) |
livM ← |
branched‑chain amino acid ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,595,270 | 0 | T | . | 98.3%
| 511.5
/ 2.6
| 118 | coding (211/1278 nt) | livM | branched‑chain amino acid ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base . (52/63); total (52/66) |
| Fisher's exact test for biased strand distribution p-value = 5.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
Only 100 of 130 total aligned reads displayed.
GCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCG > NC_000913/3595171‑3595365
|
gccacgccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCt > 1:563873/1‑100 (MQ=255)
gccacgccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCt > 2:1134251/1‑100 (MQ=255)
ccacgccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTTTGTCCGTAAACGCt < 2:1819049/99‑1 (MQ=255)
cacgccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCttt > 1:2575585/1‑100 (MQ=255)
cacgccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCttt < 1:193224/100‑1 (MQ=255)
acgccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCtttc < 2:667024/100‑2 (MQ=255)
cgccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCAGAAACGCtttca > 1:1206204/1‑98 (MQ=255)
gccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCtttcaa > 1:839093/1‑97 (MQ=255)
ccacCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCtttcaac < 1:2749807/100‑5 (MQ=255)
acCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAAccc < 2:2935470/100‑1 (MQ=255)
cAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTc > 1:564483/1‑100 (MQ=255)
aaGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCt < 2:2328823/100‑1 (MQ=255)
aGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTg < 1:332597/100‑1 (MQ=255)
tcACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAGACGC‑TTTCAACCCTTTCTgg < 2:1866640/99‑1 (MQ=255)
taCCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGa < 1:2766062/99‑1 (MQ=255)
cACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGa < 2:2552246/100‑1 (MQ=255)
cACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGa > 1:2751466/1‑100 (MQ=255)
aCCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGaa > 1:2885479/1‑100 (MQ=255)
aCCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGaa > 1:403373/1‑100 (MQ=255)
aCCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGaa > 2:2766025/1‑100 (MQ=255)
ccAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGaaa > 1:2810179/1‑100 (MQ=255)
aCAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGcc < 2:2042366/100‑1 (MQ=255)
aCAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGcc < 2:2655822/100‑1 (MQ=255)
cAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCg < 1:107644/100‑1 (MQ=255)
aGCGCCACGAGGAACAGTTTCTGCTGCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCgg < 2:2684277/100‑1 (MQ=255)
gcCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCg > 1:2064515/1‑100 (MQ=255)
gcCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCg > 1:1488876/1‑100 (MQ=255)
gcCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCg > 1:1726687/1‑100 (MQ=255)
gcCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCg > 2:2389106/1‑100 (MQ=255)
gcCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCg < 2:1711630/100‑1 (MQ=255)
ccACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGc > 2:2252636/1‑100 (MQ=255)
cACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCGATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCa < 1:2145063/100‑1 (MQ=255)
cACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCa < 2:177002/100‑1 (MQ=255)
cACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCa < 2:1390885/100‑1 (MQ=255)
aCGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCaa > 2:700244/1‑100 (MQ=255)
aGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAAACCTTTCTGGAAAGCCGGTCGCAAAAg > 1:2853809/1‑100 (MQ=255)
gAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCt < 1:1570822/100‑1 (MQ=255)
gAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCt > 2:1937068/1‑100 (MQ=255)
aaCAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAGGCTg > 1:101808/1‑100 (MQ=255)
aaCAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTg < 2:684472/100‑1 (MQ=255)
aCAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTgg < 2:331996/100‑1 (MQ=255)
aCAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTgg > 1:739316/1‑100 (MQ=255)
aCAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTgg > 1:677818/1‑100 (MQ=255)
cAGTTTCTGCTTCACCGTGGAGCCATCATTGGCGGGCAGAATAATCTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGga < 2:790254/100‑1 (MQ=255)
aGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaa > 1:2282797/1‑100 (MQ=255)
aGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaa < 1:2269736/100‑1 (MQ=255)
gTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaag < 1:132918/100‑1 (MQ=255)
gTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaag > 1:2133974/1‑100 (MQ=255)
gTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaag > 1:2134324/1‑100 (MQ=255)
gTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaag < 1:700252/100‑1 (MQ=255)
tttCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaaga < 2:2373733/100‑1 (MQ=255)
ttCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAACAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaagaa > 2:1638371/1‑100 (MQ=255)
cTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaa > 2:383792/1‑100 (MQ=255)
tGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaaa < 1:1184239/100‑1 (MQ=255)
tcTTCACCGTGGAGCCATAAAAGTCGGGCACAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTTGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAg < 2:2803561/99‑1 (MQ=255)
gCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAg < 1:1134263/100‑1 (MQ=255)
ttCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGac > 2:2839603/1‑100 (MQ=255)
ttCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGac < 1:2930989/100‑1 (MQ=255)
tCACTGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAg < 2:152817/97‑1 (MQ=255)
tCACCGTGGAGCCATCCATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaaa < 2:1578946/96‑1 (MQ=255)
cACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAACAAAAAGacca > 2:2011457/1‑100 (MQ=255)
ccGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGaccacc > 1:1964356/1‑100 (MQ=255)
aGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTg < 2:839084/100‑1 (MQ=255)
aGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTg < 2:279737/100‑1 (MQ=255)
ccATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGcc < 2:2400452/100‑1 (MQ=255)
ccATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGcc < 1:1393260/100‑1 (MQ=255)
cATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCg < 2:1553423/100‑1 (MQ=255)
cATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCg > 1:157820/1‑100 (MQ=255)
aTCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGa > 1:2288108/1‑100 (MQ=255)
aTCAATGGCGGGCAGAATAAACTGCGGTCCGGAAACGCTGTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGcc < 2:2327692/99‑1 (MQ=255)
tCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACG‑ATTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGAt < 1:1941803/100‑1 (MQ=255)
cAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATa < 1:551213/100‑1 (MQ=255)
cAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATa < 1:2866565/100‑1 (MQ=255)
aaTGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATaa > 2:2325711/1‑100 (MQ=255)
aTGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATaaa < 1:172111/100‑1 (MQ=255)
aTGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATaaa < 2:2341571/100‑1 (MQ=255)
aTGGCCGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAACGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGAt < 2:677810/97‑1 (MQ=255)
tGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAac > 1:1304984/1‑100 (MQ=255)
tGGCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACACTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAac > 1:783687/1‑100 (MQ=255)
gCGGGCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAacac < 2:798516/100‑1 (MQ=255)
gCAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCAc < 1:1739636/100‑1 (MQ=255)
cAGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACt > 2:1904335/1‑100 (MQ=255)
aGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTg < 1:87826/100‑1 (MQ=255)
aGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTg < 2:2264767/100‑1 (MQ=255)
aGAATAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTg < 2:629680/100‑1 (MQ=255)
aTAAACTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCa > 2:86604/1‑100 (MQ=255)
aCTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACgg > 2:2250530/1‑100 (MQ=255)
cTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGa > 2:905938/1‑100 (MQ=255)
cTTCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGGGCCGATAAACACCCACTGCCAACGGa < 1:1861172/100‑1 (MQ=255)
ttCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGAc < 2:563866/100‑1 (MQ=255)
ttCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGAc > 1:2825706/1‑100 (MQ=255)
tCGGTCCGGAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACa > 1:1755380/1‑100 (MQ=255)
ggTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACAt < 1:2546926/100‑1 (MQ=255)
gTCCGGAAACGC‑TTTCAACCCTTTCTAGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATcc > 1:1866348/1‑100 (MQ=255)
ggAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAg < 2:403366/100‑1 (MQ=255)
ggAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAg < 2:296772/100‑1 (MQ=255)
ggAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAg > 1:1116617/1‑100 (MQ=255)
gAAACGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGc < 1:1194769/100‑1 (MQ=255)
aaaCGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTNCCAACGGACATCCGAAGcc < 1:1675395/100‑1 (MQ=255)
aaCGC‑TTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCg > 1:588982/1‑100 (MQ=255)
|
GCCACGCCACCGCAAGCACCAACAGCGCCACGAGGAACAGTTTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCG > NC_000913/3595171‑3595365
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
