Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F228 I0 R1
|
182 |
117.2 |
5818924 |
93.6% |
5446512 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,249,448 |
T→C |
72.5% |
L25P (CTT→CCT) |
yqjD → |
membrane‑anchored ribosome‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,249,448 | 0 | T | C | 72.5%
| 190.4
/ 72.9
| 116 | L25P (CTT→CCT) | yqjD | membrane‑anchored ribosome‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (20/12); new base C (38/46); total (58/58) |
| Fisher's exact test for biased strand distribution p-value = 1.45e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
CTACTTACTCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCGCCTGGGTGAAACC > NC_000913/3249351‑3249545
|
ctactTACTCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTa < 1:2132260/100‑1 (MQ=255)
cttactCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCt < 2:1977898/100‑1 (MQ=255)
cttactCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCt > 1:386245/1‑100 (MQ=255)
actCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCAt > 1:2662069/1‑100 (MQ=255)
actCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCAt < 1:762522/100‑1 (MQ=255)
ctCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATc > 2:1416273/1‑100 (MQ=255)
ctCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATc > 1:300195/1‑100 (MQ=255)
tCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCt < 1:1887253/100‑1 (MQ=255)
cACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTg < 2:2036993/100‑1 (MQ=255)
ccTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGc > 2:134329/1‑100 (MQ=255)
cTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCg > 1:496746/1‑100 (MQ=255)
cTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCg > 2:1741036/1‑100 (MQ=255)
tGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCga > 2:150515/1‑100 (MQ=255)
ggAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCgag < 1:1180085/100‑1 (MQ=255)
ggAGAAAACTATGTCGAAAGAACACACTACGGAACATCTACCTGCTGAGATGAAATCCCTTTCCGGTACGCTGGAAGAGGTGCTTAGCTCATCTGGCg > 1:1158601/1‑98 (MQ=255)
gagaAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCgaga < 1:94349/100‑1 (MQ=255)
gagaAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCgaga < 1:1039741/100‑1 (MQ=255)
gagaAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCgag > 1:2512741/1‑99 (MQ=255)
cgaAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCgaga < 1:1762504/98‑1 (MQ=255)
gaAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAg > 1:2804136/1‑100 (MQ=255)
gaAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAg > 1:1593177/1‑100 (MQ=255)
gaAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAg > 2:629203/1‑100 (MQ=255)
aaaCTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTc < 1:2112500/100‑1 (MQ=255)
cTATGTCGAAAGAACACACTACGGAACGTCTGCGTTGTGAGTTGAAATCCATTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGATAAGTCGaa < 1:2357487/100‑1 (MQ=255)
cTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGaa > 1:2096912/1‑100 (MQ=255)
cTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCAGCTGGCGAGAAGTCGaa > 1:1699810/1‑100 (MQ=255)
tATGTAGAAAGAACAAACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCgag < 2:2624723/91‑1 (MQ=255)
aTGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAaag < 2:2677781/100‑1 (MQ=255)
aTGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAaag > 1:257027/1‑100 (MQ=255)
gTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAaagaa > 2:2843284/1‑100 (MQ=255)
cGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCGCATCTGGCGAGAAGTCGAAagaaga > 1:403640/1‑100 (MQ=255)
gAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAagag < 1:1502600/100‑1 (MQ=255)
aaaGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCGTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGt < 1:1871906/100‑1 (MQ=255)
aaGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGtt < 1:2851720/100‑1 (MQ=255)
aGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTg < 2:857339/100‑1 (MQ=255)
aGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTg < 2:2657592/100‑1 (MQ=255)
aGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTg < 2:1793634/100‑1 (MQ=255)
aGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTg < 1:487319/100‑1 (MQ=255)
gAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGa < 1:2464333/100‑1 (MQ=255)
gAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGa < 1:1201905/100‑1 (MQ=255)
gAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGa < 2:2655554/100‑1 (MQ=255)
aaCACACTACGGAACATCTGGGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAg < 1:2878109/100‑1 (MQ=255)
aaCACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAg < 1:1904812/100‑1 (MQ=255)
acacacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGt < 2:188274/100‑1 (MQ=255)
cacacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGCGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTa > 2:124086/1‑100 (MQ=255)
cacacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAATTCGAAAGAAGAGTTGAGTa > 2:86223/1‑100 (MQ=255)
acacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTaa > 2:2056227/1‑100 (MQ=255)
cacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAg > 1:2017287/1‑100 (MQ=255)
cacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAg > 1:2228272/1‑100 (MQ=255)
cacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAg > 1:2227094/1‑100 (MQ=255)
cacTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAg > 2:1439550/1‑100 (MQ=255)
cTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGAt > 1:517437/1‑100 (MQ=255)
tACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTTGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGAtt < 1:1060876/100‑1 (MQ=255)
tACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGAtt > 2:2736651/1‑100 (MQ=255)
aCGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTc > 2:229284/1‑100 (MQ=255)
cGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCg < 1:2610804/100‑1 (MQ=255)
cGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCg > 2:2404749/1‑100 (MQ=255)
ggAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGt > 1:2885232/1‑100 (MQ=255)
gAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTa > 2:1652459/1‑100 (MQ=255)
gAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTa < 2:924870/100‑1 (MQ=255)
aaCATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGCAGCGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGCAGAGGCGAGTAACATTCGGAg > 1:1501939/1‑100 (MQ=255)
aaCATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAg < 2:1181292/100‑1 (MQ=255)
aaCATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAg < 2:455627/100‑1 (MQ=255)
aCATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGc < 2:339387/100‑1 (MQ=255)
tCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCaaa < 2:267801/100‑1 (MQ=255)
cTGCGTGCTGCGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCAGGCGCGAACTCGAAAGAAGAGTTCAGTAAGATGCGTAGCAAAg > 1:1287206/1‑100 (MQ=255)
cGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGAGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCgg < 2:2582866/100‑1 (MQ=255)
gTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGa > 2:846841/1‑100 (MQ=255)
tGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAg < 1:2056220/100‑1 (MQ=255)
gCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGc < 1:2674356/100‑1 (MQ=255)
cTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCa > 2:1267882/1‑100 (MQ=255)
cTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCa > 1:1412874/1‑100 (MQ=255)
tGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAg < 2:401564/100‑1 (MQ=255)
gAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAgg > 2:1108119/1‑100 (MQ=255)
aGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGc < 2:45896/100‑1 (MQ=255)
aGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGc < 1:1871893/100‑1 (MQ=255)
ttGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGc < 1:1822985/98‑1 (MQ=255)
ttGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCAc < 2:1441215/100‑1 (MQ=255)
tGAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACt < 2:2429091/100‑1 (MQ=255)
gAAATCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTg > 2:2207575/1‑100 (MQ=255)
aaTCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGaa < 2:2728461/100‑1 (MQ=255)
tCCCTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAAc < 1:2122335/100‑1 (MQ=255)
cccTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACa < 2:2766860/100‑1 (MQ=255)
ccTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACag < 1:776085/100‑1 (MQ=255)
ccTTTCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACa > 2:618421/1‑99 (MQ=255)
ttCCGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGc > 2:723730/1‑100 (MQ=255)
ccGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCg < 2:1137511/100‑1 (MQ=255)
ccGATACGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCg < 2:2271830/100‑1 (MQ=255)
cGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGt > 2:2851152/1‑100 (MQ=255)
gATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGtt > 2:2669703/1‑100 (MQ=255)
cGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCg > 1:864151/1‑100 (MQ=255)
cGCTGGAAGAGGTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCg < 1:1741030/100‑1 (MQ=255)
cGCTGGAAAAGGTGCCTAGCTCATATGGGGCGAAGTCGAAAGAAGAGCTAAGTAAGATACGGAGCAAGGCGGAGCAGGCACTGAAACAGAGCCGTTATc > 1:2424741/1‑99 (MQ=255)
ggTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCGCCTGGGTGaa > 2:567549/1‑100 (MQ=255)
ggTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTGAT‑GCCTGGGGGaa > 1:2637161/1‑99 (MQ=255)
ggTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCGCCTGGGTGaa > 1:2752434/1‑100 (MQ=255)
ggTGCCTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGCTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAACCAGAGCCGTTATCGCCTGGGTg > 1:981268/1‑98 (MQ=255)
tGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCGCCTGGGTGAAAc < 2:917026/100‑1 (MQ=255)
gCTTAGCTCATCTGGCGAGAAGTCGAAATAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCGCCTGGGTGAAAcc < 2:2159226/100‑1 (MQ=255)
gCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCGCCTGGGTGAAAcc > 1:1822884/1‑100 (MQ=255)
|
CTACTTACTCACCTGGAGAAAACTATGTCGAAAGAACACACTACGGAACATCTGCGTGCTGAGTTGAAATCCCTTTCCGATACGCTGGAAGAGGTGCTTAGCTCATCTGGCGAGAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCGGAGCAGGCACTGAAACAGAGCCGTTATCGCCTGGGTGAAACC > NC_000913/3249351‑3249545
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
