Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F228 I0 R1
|
182 |
117.2 |
5818924 |
93.6% |
5446512 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,017 |
C→T |
27.8% |
intergenic (‑227/+81) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,017 | 0 | C | T | 27.8%
| 328.5
/ 130.7
| 196 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (59/71); new base T (48/3); total (122/74) |
| Fisher's exact test for biased strand distribution p-value = 2.63e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.79e-01 |
Only 100 of 196 total aligned reads displayed.
CCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGT > NC_000913/3705921‑3706114
|
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 1:1714925/1‑100 (MQ=255)
aacGGGTATACAGATTGTTGACAAAGTGCGCATTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc > 2:1960069/3‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:2680935/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc > 2:213659/1‑100 (MQ=255)
cggggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt < 1:319334/95‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑‑‑t‑t > 1:2285169/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑‑‑t‑t > 2:1833524/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑g > 2:1486724/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑g < 1:767779/100‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑Gt < 2:1101458/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTa < 1:1066102/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTa < 1:2253249/100‑1 (MQ=255)
aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAg > 2:2234618/1‑100 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAgg < 1:2278694/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGcc > 1:2088129/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGAt > 2:1373498/1‑100 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGAt < 1:1023825/100‑1 (MQ=255)
aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAg < 2:505799/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCg > 1:8102/1‑100 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGa > 2:1992020/1‑100 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGa > 1:1134815/1‑100 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAg < 1:2875506/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAg < 1:105123/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCCTTAACCCCATAGCCGGCCTAC‑AAAGTCGTGCAAACTCCGTACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATCAGCGGAgc < 1:211091/100‑1 (MQ=18)
attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAgcgc > 2:1839977/10‑100 (MQ=18)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:2088136/100‑1 (MQ=255)
ttcgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:2311783/8‑100 (MQ=18)
gatctggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑C‑‑‑T‑CCGTGTAGGCCTGATAAGCGTAGCGCATc < 2:1402921/94‑1 (MQ=18)
gtaggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTGCA‑GAGA‑T‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:373862/5‑100 (MQ=14)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑T‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:2291973/4‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg < 1:1396944/97‑1 (MQ=21)
taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 1:1123923/4‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2882801/3‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:889574/3‑100 (MQ=17)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1880716/3‑100 (MQ=17)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1492369/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GGAT‑A‑‑‑C‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:150656/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCG‑GAGA‑A‑‑‑A‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 1:2602641/3‑99 (MQ=21)
ggctggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTGCA‑CAGC‑T‑‑‑A‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1699792/11‑100 (MQ=25)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCT‑C‑‑‑C‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2588977/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑C‑‑‑T‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAgatc > 1:1402919/2‑97 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:60616/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2211422/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1317900/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1882686/1‑100 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:715891/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑T‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:2906945/1‑99 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1597626/1‑99 (MQ=21)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:191299/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:561257/9‑98 (MQ=17)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1448217/1‑100 (MQ=255)
cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑T‑GAAT‑C‑‑‑CCTT‑‑GTAGGCCTGATAAGCGTAACGCATCAGGCAttt > 1:2752226/8‑99 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 2:2710258/8‑97 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 2:2153981/8‑97 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:252433/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:300180/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1188413/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:2149795/7‑97 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2761803/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAGGAAC‑G‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:88122/7‑96 (MQ=25)
ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCA‑GGAA‑C‑‑‑G‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:675479/7‑96 (MQ=25)
gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCAattt > 2:2020099/6‑100 (MQ=21)
gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 2:1616832/1‑100 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttttt > 1:1390426/1‑98 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:1207848/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:1906928/1‑100 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:390814/1‑100 (MQ=255)
gcgTTAACGGCTTATCCGGCCTAC‑AGAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TT‑‑GTAGGCCTGATAAGTGGAGCGCATCAGGCATTtttgcctt < 1:2440384/99‑1 (MQ=18)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2413054/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1933571/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:1209265/100‑1 (MQ=255)
ttAACGCCTTACCCGGCCTAC‑AAAATCGTGCATATGCAAGACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGTGCGCATCAGGCATTtttgcctttgcc < 2:174846/100‑1 (MQ=21)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 2:463066/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:2565758/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:2516676/1‑100 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:1394979/1‑100 (MQ=255)
aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 1:595569/100‑1 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa < 2:2403941/100‑1 (MQ=255)
cGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGAGCATCAGGCATTTTTGCCTTTGCCATCAGTCt > 1:109915/1‑95 (MQ=255)
ggCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg > 1:184531/1‑100 (MQ=255)
ccTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc < 2:2275028/100‑1 (MQ=255)
ccTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc < 1:1630879/100‑1 (MQ=255)
tAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt > 1:2408914/1‑100 (MQ=255)
aC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt < 2:2215027/100‑1 (MQ=255)
aaaaTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTa < 1:882415/100‑1 (MQ=255)
aaaTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTaa < 1:2117971/100‑1 (MQ=255)
aaTCGTGCAAATTCGATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:2846120/100‑1 (MQ=255)
aaTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 2:2359571/100‑1 (MQ=255)
cGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattat > 2:745275/1‑100 (MQ=255)
cGTGCAAATTCAATACATTGAA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCACTCAGTCTTGTATGGCTTTTAatta > 1:1669999/1‑99 (MQ=255)
tGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc > 1:1800363/1‑100 (MQ=255)
gCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:447849/100‑1 (MQ=255)
gCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:289808/100‑1 (MQ=255)
cAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa > 2:1646894/1‑100 (MQ=255)
aaaTTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt < 1:904804/100‑1 (MQ=255)
aaaTTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt > 2:398980/1‑100 (MQ=255)
aTTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATag > 1:2015610/1‑100 (MQ=255)
ttCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga < 1:472378/100‑1 (MQ=255)
aTACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACg > 2:2542214/1‑100 (MQ=255)
tACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGt < 1:872519/100‑1 (MQ=255)
|
CCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGT > NC_000913/3705921‑3706114
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
