Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F53 I0 R1
|
47 |
135.3 |
6511354 |
96.7% |
6296479 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,017 |
C→T |
18.6% |
intergenic (‑227/+81) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,017 | 0 | C | T | 18.6%
| 524.3
/ 91.5
| 213 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (66/100); new base T (35/3); total (110/103) |
| Fisher's exact test for biased strand distribution p-value = 1.25e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 |
Only 100 of 216 total aligned reads displayed.
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 2:756339/100‑1 (MQ=255)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 2:1717408/100‑1 (MQ=255)
ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa < 1:1722107/100‑1 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:2540662/97‑1 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga < 1:2726085/100‑1 (MQ=255)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGACCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Gaa > 2:1000886/1‑99 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑tt > 1:96292/1‑100 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTc < 2:2553549/100‑1 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTc > 2:445149/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCg < 1:554843/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTa > 1:71821/1‑100 (MQ=255)
ggcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAg > 1:2269458/8‑100 (MQ=18)
aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAg < 2:56786/100‑1 (MQ=255)
aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAg < 1:3241177/100‑1 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGG < 1:120160‑M1/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCC < 2:3057609‑M1/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCC < 1:2453805‑M1/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCC > 1:2298712‑M1/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGA > 2:1112880‑M1/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTG < 1:1419994‑M1/99‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATa < 2:496698/100‑1 (MQ=255)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCtaataa > 2:2980698/1‑100 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAg < 1:3028648/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAg < 1:2768602/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAgcg > 2:2536623/1‑100 (MQ=255)
gttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCT‑C‑CGTGTAGGCCTGATAAGCGTAgcgc > 1:1381591/10‑100 (MQ=18)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCa < 1:2319709‑M2/100‑2 (MQ=255)
atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑CTTGTAGGCCTGATAAGCGTAGCGCAt > 1:459037/9‑100 (MQ=18)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCatc < 1:1243170‑M2/100‑4 (MQ=255)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCatca > 1:2578396‑M2/1‑96 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCatcag < 1:2027936‑M2/100‑6 (MQ=255)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2064445/4‑100 (MQ=21)
ntgCCGGAAGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATAGTGCAAATACAATACATTGCA‑GAAT‑C‑TCCGTAGGCCGGATAAGCGGAGCGCatcaggc < 2:1296808‑M2/99‑8 (MQ=255)
aggccGGATAAGGCGTTAACGACGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCatcaggc < 2:1491592‑M2/98‑8 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑CTTGTAGGCCTGATAAGCGTACCGCATCAGGc > 2:2132410/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1827863/3‑100 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑TTGGTAGGCCTGATAAGCGCAGCGCATCAgg > 1:1066213/3‑99 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:1433463/3‑100 (MQ=25)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGA‑T‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2929041/3‑100 (MQ=14)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATgcgctccgcttatcaggc < 1:739240‑M1/100‑19 (MQ=255)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATgcgctccgcttatcaggc < 2:96290‑M1/100‑19 (MQ=255)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATgcgctccgcttatcaggc < 1:1186655‑M1/100‑19 (MQ=255)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATgcgctccgcttatcaggc < 1:1992686‑M1/100‑19 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:651762/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:346974/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:334523/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1574772/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2514116/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:758786/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:628195/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GGAT‑A‑CGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1097111/2‑100 (MQ=17)
ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:3142817/2‑100 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2926657/1‑99 (MQ=18)
ccGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:2161661/1‑98 (MQ=18)
cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATgcgctccgcttatcaggcctac < 1:2065379‑M1/100‑23 (MQ=255)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3245867/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GGAA‑A‑CACGTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt > 2:3173169/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 1:150825/7‑98 (MQ=21)
ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATgcgctccgcttatcaggcctacg < 1:1738871‑M1/100‑24 (MQ=255)
gataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAAT‑CCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 2:1654229/6‑97 (MQ=21)
gataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt < 1:478085/95‑1 (MQ=21)
gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGACgcgctccgcttatcaggcctacga < 1:41579‑M1/100‑25 (MQ=255)
ataaggcgTTTACGCCTTATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttta > 2:852679/5‑99 (MQ=18)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:493807/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg > 2:898528/1‑100 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1203661/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2862721/100‑1 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:592659/100‑1 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:1655618/1‑100 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:1544192/1‑100 (MQ=255)
gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATgcgctccgcttatcaggcctacgaaaattc < 1:3235040‑M1/100‑31 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:540356/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:138552/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:1570183/1‑100 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:1455542/1‑100 (MQ=255)
aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑TAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:317301/1‑99 (MQ=255)
cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 2:244358/1‑100 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:1595774/100‑1 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGATCAAATACAATAAATTGCA‑GAAT‑A‑TTCGTAGGCCTGATAAGCGGAGCGCATCAAGCATTTTTGCCTTTGCTAtta > 2:2597756/1‑96 (MQ=18)
aTCCGGCCTAT‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 1:42761/100‑1 (MQ=255)
cGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt < 2:2269442/100‑1 (MQ=255)
cGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt < 2:1188646/100‑1 (MQ=255)
ggCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg < 2:284799/100‑1 (MQ=255)
gCCTAT‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATgg < 2:3126902/100‑1 (MQ=255)
cTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt > 1:1621840/1‑100 (MQ=255)
c‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTTGGCCTGATAAGCGGAGCGCATCAGGCATTTTTTCTTTTTCTATCTGTCTTGTATCGCtt > 2:2004695/1‑98 (MQ=21)
ttccgatctGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt < 1:2420684/92‑1 (MQ=255)
aaaaTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTa < 2:1651247/100‑1 (MQ=255)
aaTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 2:684105/100‑1 (MQ=255)
cGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattat < 2:176973/100‑1 (MQ=255)
tGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc > 2:1214875/1‑100 (MQ=255)
cAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTTTTTTTTTTTTCAATCTTGTAAGGCTTTTAATTATTCGa > 2:798048/1‑100 (MQ=21)
aaaTTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa < 1:877622/99‑1 (MQ=255)
aaaTTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt < 2:107808/100‑1 (MQ=255)
aaTTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATa < 2:877360/100‑1 (MQ=255)
aTTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATag < 1:1132154/100‑1 (MQ=255)
ttCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga > 1:892122/1‑100 (MQ=255)
cAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAgaga < 1:234274/100‑1 (MQ=255)
aaTACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCTATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGAc > 2:1836600/1‑100 (MQ=255)
aTACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACg > 1:3094236/1‑100 (MQ=255)
|
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTT > NC_000913/3705918‑3706116
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
