Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I0 R1
|
306 |
176.9 |
8831342 |
93.4% |
8248473 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,017 |
C→T |
31.3% |
intergenic (‑227/+81) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,017 | 0 | C | T | 31.3%
| 441.5
/ 224.1
| 298 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (101/86); new base T (83/2); total (210/88) |
| Fisher's exact test for biased strand distribution p-value = 2.43e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 |
Only 100 of 300 total aligned reads displayed.
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGT > NC_000913/3705918‑3706114
|
gcCACCGGTTATACAGATTGTTGACAAAGTGCCCTTTGTTTATGCCGGATGTGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 2:3355360/98‑1 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 2:2606558/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:2841549/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:3938411/1‑100 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑a < 1:169121/99‑1 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑Gaa > 2:2171039/1‑100 (MQ=255)
ataCAGATGGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAtt‑‑‑t < 1:341159/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑g < 2:2995149/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTa < 1:3150194/100‑1 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAgg < 1:247495/100‑1 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAgg > 2:340911/1‑100 (MQ=255)
tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGc > 2:4266395/1‑100 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAG‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGcc > 1:3088648/1‑100 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGcc < 2:715622/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTGACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTg < 1:2210155/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTg > 1:1683117/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTg < 2:1470226/100‑1 (MQ=255)
aaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTg > 2:1834330/3‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGa > 1:3744466/1‑100 (MQ=255)
aagcgcacTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAg > 2:2574175/8‑100 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGc < 1:1976622/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:2371245/100‑1 (MQ=255)
tttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAgcgc > 2:209628/10‑100 (MQ=18)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1735579/100‑1 (MQ=255)
ctttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTTA‑‑‑TTG‑‑GTAGGCCTGATAAgcgcagcgca > 2:2700622/9‑100 (MQ=21)
tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCAt > 2:1117994/8‑100 (MQ=21)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:3772392/1‑100 (MQ=255)
cttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAGC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAgcgc > 2:945490/8‑98 (MQ=17)
ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GAATCC‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:3553759/7‑100 (MQ=18)
ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑C‑‑‑‑‑AATT‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATc > 2:4343869/7‑100 (MQ=18)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:141880/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:3531107/100‑1 (MQ=255)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:2461817/1‑100 (MQ=255)
tgtaggCCGGATAAGGCGTTCACGCCGCATCAGGCCTAC‑AAAGACCTGCAAATTCAATATATTG‑C‑‑A‑GGATA‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2981499/6‑100 (MQ=17)
tgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:2264423/6‑99 (MQ=17)
gtaggCCGGATAAGGCGTTCACGCTGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑C‑‑A‑CCATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:645012/5‑100 (MQ=18)
gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCTAC‑AAGAACGTGCAAATTCAACAAATTGTG‑‑ATGCATC‑‑‑CT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:515598/5‑100 (MQ=18)
taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1483394/4‑100 (MQ=17)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑‑‑‑AATC‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:3253062/4‑100 (MQ=18)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:3801484/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAAGCGTGCAAATTCAATACATTG‑C‑‑A‑TGGGC‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:4033404/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAGC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2863329/3‑100 (MQ=17)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:380383/1‑100 (MQ=255)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:685377/1‑100 (MQ=255)
ggctggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTG‑C‑‑A‑CAGCT‑‑‑AGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2329378/11‑100 (MQ=25)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCACTATATTG‑C‑‑A‑GAAAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:732366/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:966751/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑C‑‑A‑ATTCT‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:868667/2‑99 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑‑‑AATTCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:1218092/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑T‑‑G‑GGCTC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2075891/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑AGGGACT‑‑‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 2:2470596/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTG‑CGGA‑GAAAA‑‑‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:3562998/2‑98 (MQ=21)
gtcggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTG‑C‑‑A‑GGAAC‑‑‑GAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3266383/10‑99 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3624096/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑C‑‑‑‑‑AATT‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:4109146/1‑98 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑C‑‑‑‑‑AATT‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:3930721/1‑98 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAGC‑‑‑CAC‑‑GTAGTCCTGATAAGCGTAGCGCATCAGGCag > 1:1008699/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAGC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGACa > 2:1010024/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑C‑‑A‑CCATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:168247/1‑99 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑C‑‑A‑GGAGC‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2227271/1‑99 (MQ=18)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:3517417/1‑99 (MQ=17)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑C‑‑A‑TGGGC‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:1252887/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaat < 1:1117991/92‑3 (MQ=25)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTG‑C‑‑A‑AGATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 2:4129596/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑C‑‑A‑GGAGC‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1203728/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTG‑C‑‑A‑GAGAT‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:4052065/9‑98 (MQ=14)
ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑C‑‑A‑GGAGT‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:1279166/1‑100 (MQ=21)
ccGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:4174774/1‑100 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑‑‑‑AATC‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 2:2769333/8‑97 (MQ=18)
cggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 2:2418941/8‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑T‑‑G‑GGCTC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3320088/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCACTTAAATTCAATATATTG‑C‑‑A‑CCATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 1:2987483/7‑99 (MQ=21)
ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTG‑C‑‑A‑GGAAC‑‑‑GAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:1517992/7‑96 (MQ=21)
gataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCATGATAAGCGGAGCGCATCAGGCAttttt > 1:1375457/6‑100 (MQ=18)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 1:1881978/4‑98 (MQ=18)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 1:2104398/1‑98 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2022169/1‑100 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:1834323/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGCGCGCATCAGGCATTttttccttttc > 1:1315856/1‑96 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttttttttttttt > 1:3867332/1‑90 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:3283167/100‑1 (MQ=255)
cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 1:2268796/1‑100 (MQ=255)
aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGCCTTTGCCATCAGTCtt > 1:571339/1‑99 (MQ=255)
cctgCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa > 2:1970570/4‑100 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa < 1:846601/100‑1 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa > 2:47104/1‑100 (MQ=255)
cGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGTCTTTGCTTTTAGTCGTGTac > 1:4230648/1‑99 (MQ=18)
cGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt > 1:2680948/1‑100 (MQ=255)
ggCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg > 1:531758/1‑100 (MQ=255)
tAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt < 1:2293729/100‑1 (MQ=255)
tAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt > 1:3912872/1‑100 (MQ=255)
c‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt > 1:1793546/1‑100 (MQ=255)
aaTCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGTCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 2:442052/100‑1 (MQ=255)
aaTCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 2:1883434/100‑1 (MQ=255)
tCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatta < 2:2710519/100‑1 (MQ=255)
gTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt < 2:3121656/100‑1 (MQ=255)
aaaTTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt < 2:1347561/100‑1 (MQ=255)
aaTTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATa < 1:3185528/100‑1 (MQ=255)
cAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAgaga < 2:1372329/100‑1 (MQ=255)
tACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTACTTATTCGATCGAGACGt > 1:4062190/1‑100 (MQ=255)
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GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGT > NC_000913/3705918‑3706114
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
