Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F228 I0 R1
|
182 |
117.2 |
5818924 |
93.6% |
5446512 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,121,887 |
(GC)5→4 |
100% |
coding (400‑401/531 nt) |
hslV ← |
peptidase component of the HslUV protease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,121,879 | 0 | G | . | 92.7%
| 498.4
/ 31.5
| 123 | coding (409/531 nt) | hslV | peptidase component of the HslUV protease |
| Reads supporting (aligned to +/- strand): ref base G (3/6); new base . (54/60); total (57/66) |
| Fisher's exact test for biased strand distribution p-value = 5.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 |
| * | NC_000913 | 4,121,880 | 0 | C | . | 92.7%
| 502.7
/ 31.4
| 123 | coding (408/531 nt) | hslV | peptidase component of the HslUV protease |
| Reads supporting (aligned to +/- strand): ref base C (3/6); new base . (54/60); total (57/66) |
| Fisher's exact test for biased strand distribution p-value = 5.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 |
Only 100 of 137 total aligned reads displayed.
CGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGTGATGAT > NC_000913/4121780‑4121972
||
cGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAg > 1:1525955/1‑100 (MQ=255)
cGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAg > 2:2839215/1‑100 (MQ=255)
gtgtGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgc > 1:2408049/1‑100 (MQ=255)
tgtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcg > 2:1214088/1‑100 (MQ=255)
gtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTCACAgcac > 1:1064688/1‑94 (MQ=255)
gtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgc > 2:1625372/1‑100 (MQ=255)
gtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgc > 2:1009006/1‑100 (MQ=255)
tgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgcc < 2:1792354/100‑2 (MQ=255)
ggAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccg < 2:2642268/100‑3 (MQ=255)
gAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGTCGCTAAGGTCAGTGTTTTCTAACAgcgcgcgccgc > 1:701942/1‑97 (MQ=255)
aaaTGGTTGGTAAAGATGCAAATGTCGCCTGCAATAGCCAACGCCTTTTCAGCAATGTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccgca < 1:2706333/100‑5 (MQ=255)
tggttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccgcagcc < 2:1265069/100‑8 (MQ=255)
tggttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccgcagcc < 1:2693125/100‑8 (MQ=255)
gttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTg > 1:609535/1‑100 (MQ=255)
ttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTgg < 2:1001652/100‑1 (MQ=255)
ggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAGTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTgg > 1:2738269/1‑100 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCg < 2:2397475/100‑1 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCg < 2:2314079/100‑1 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCg < 1:583369/100‑1 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCg < 2:2756203/100‑1 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCg < 1:1237030/100‑1 (MQ=255)
ataGATGCAAATGTCGCCTGCATTATCCAACGCCTTTGCAGCAATTTTACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCg < 1:1963865/100‑1 (MQ=255)
ataGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTa > 1:45256/1‑100 (MQ=255)
ataGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTa < 2:45257/100‑1 (MQ=255)
ataGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTa > 1:903294/1‑100 (MQ=255)
taGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTaa > 1:2110888/1‑100 (MQ=255)
aGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAg > 2:2541718/1‑100 (MQ=255)
aGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAg < 2:534412/100‑1 (MQ=255)
gATGCAAGTGTCGCCGGCAATATCCAACGCCTTTTCCGCAATTTCACGGGCGCTAAGTTCGGTGTTTTCTAACA‑‑TCGCGCGCCGCAGCGTGGGCTTa > 1:719101/1‑97 (MQ=255)
tGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgc > 1:104510/1‑100 (MQ=255)
tGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgc > 1:2202972/1‑100 (MQ=255)
gCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgcc < 2:2366598/100‑1 (MQ=255)
gCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgcc < 2:2781764/100‑1 (MQ=255)
cAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgccg > 2:1312494/1‑100 (MQ=255)
aaTGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCGAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgccgcc < 2:890653/100‑1 (MQ=255)
tGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTTGGCGTAAGGGCCGCCgg > 1:1736686/1‑100 (MQ=255)
tGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCGAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCgg < 1:1844275/100‑1 (MQ=255)
cGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGc > 2:2097911/1‑100 (MQ=255)
gCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGcc < 1:249255/100‑1 (MQ=255)
gCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGcc < 2:1410069/100‑1 (MQ=255)
gCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGcc < 2:1644778/100‑1 (MQ=255)
gCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGcc > 2:2693723/1‑100 (MQ=255)
gCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGcc > 1:74259/1‑100 (MQ=255)
ccTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTACGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGACCCg > 1:2516706/1‑100 (MQ=255)
tGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGAt < 2:967717/100‑1 (MQ=255)
tGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGAt > 1:1971766/1‑100 (MQ=255)
tGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGAt < 1:1647959/100‑1 (MQ=255)
tGCAATATCCAACACCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGCGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGAt > 1:2122187/1‑100 (MQ=255)
gCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATa > 2:481696/1‑100 (MQ=255)
gCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATa > 2:2845737/1‑100 (MQ=255)
gCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTGCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATa < 2:1754272/100‑1 (MQ=255)
cAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAg < 1:2195326/100‑1 (MQ=255)
aaTATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGc < 2:543526/100‑1 (MQ=255)
aaTATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGc < 1:2162642/100‑1 (MQ=255)
atatCCAACGCCTTTTTTTTTTTTTTTCGGGCGCTAAGATCAGTGATTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGc > 1:1396043/1‑99 (MQ=255)
atatCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAg < 2:2000151/100‑1 (MQ=255)
atatCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCa < 2:2188480/100‑1 (MQ=255)
atatCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCa > 1:141175/1‑100 (MQ=255)
ccAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCTCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATaa > 1:2031667/1‑100 (MQ=255)
ccAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATaa < 2:1327140/100‑1 (MQ=255)
cAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGCTAGCAATAAg > 1:851215/1‑100 (MQ=255)
aCGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGAt < 1:506720/100‑1 (MQ=255)
gCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCg < 2:2515233/100‑1 (MQ=255)
ttttCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGttt < 1:2079362/100‑1 (MQ=255)
tttCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGtttt < 2:870968/100‑1 (MQ=255)
cAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTg > 1:1710982/1‑100 (MQ=255)
cAGCAAGTTCACGGGCGCTAAGTTCAGTGTTTGCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTg < 1:1315420/100‑1 (MQ=255)
aGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCt < 1:1281124/100‑1 (MQ=255)
gCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGc < 1:1059551/100‑1 (MQ=255)
aaTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTg < 2:1024660/100‑1 (MQ=255)
aTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGc > 2:1312832/1‑100 (MQ=255)
aTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGc > 2:2733639/1‑100 (MQ=255)
aTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATAGTTTTCTGGCTGc < 1:1801067/100‑1 (MQ=255)
tttCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGca < 2:337437/100‑1 (MQ=255)
ttCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcac < 1:2527550/100‑1 (MQ=255)
tCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcacc < 2:2192180/100‑1 (MQ=255)
tCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcacc > 2:366804/1‑100 (MQ=255)
tCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcacc < 1:2387308/100‑1 (MQ=255)
cACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCTGACTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcac > 1:1588983/1‑98 (MQ=255)
aCGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcaccac < 1:443942/100‑1 (MQ=255)
cGGGCGCTAAGTTCAGTGTTTTCTACCA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACg < 2:1583951/100‑1 (MQ=255)
cGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACg < 2:1796445/100‑1 (MQ=255)
cGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACg < 1:1835907/100‑1 (MQ=255)
cGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACg < 2:1915934/100‑1 (MQ=255)
cGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACg < 2:405203/100‑1 (MQ=255)
ggCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTc < 2:903296/100‑1 (MQ=255)
cgcCAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCAc > 1:147225/1‑100 (MQ=255)
gcTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCAcc > 2:2880839/1‑100 (MQ=255)
gTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCCATAAGATCATTTTCTGGCTGCACCACGTCAACGTTa > 2:865395/1‑99 (MQ=255)
ttCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTAcc < 2:2615926/100‑1 (MQ=255)
tCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCg < 2:2285266/100‑1 (MQ=255)
gtgtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAGGGGCCGCCGGAGCCGATAGCAATAAGATTGTTTTCTGGCTGCACCACGTCACCGTTACCGGtg < 2:1929139/100‑1 (MQ=255)
gtTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtg > 2:2210343/1‑100 (MQ=255)
gtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgat < 1:1944420/100‑1 (MQ=255)
gtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgat > 2:2378707/1‑100 (MQ=255)
gtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgat > 1:950579/1‑100 (MQ=255)
tttCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgatga > 1:1937566/1‑100 (MQ=255)
tttCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgatga > 2:1832222/1‑100 (MQ=255)
ttCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgatg < 2:2018711/100‑1 (MQ=255)
ttCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGTgatgat > 2:438669/1‑100 (MQ=255)
||
CGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGTGATGAT > NC_000913/4121780‑4121972
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
