Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F169 I1 R1
|
59 |
169.8 |
8365175 |
96.8% |
8097489 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,121,887 |
(GC)5→4 |
coding (400‑401/531 nt) |
hslV ← |
peptidase component of the HslUV protease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,121,879 | 0 | G | . | 96.2%
| 577.3
/ 15.1
| 132 | coding (409/531 nt) | hslV | peptidase component of the HslUV protease |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base . (72/55); total (74/58) |
| Fisher's exact test for biased strand distribution p-value = 6.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
| * | NC_000913 | 4,121,880 | 0 | C | . | 95.5%
| 568.8
/ 17.0
| 132 | coding (408/531 nt) | hslV | peptidase component of the HslUV protease |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base . (71/55); total (74/58) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 150 total aligned reads displayed.
CGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGTGAT > NC_000913/4121780‑4121969
||
cGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAg < 1:360394/100‑1 (MQ=255)
cGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAg < 1:3913035/100‑1 (MQ=255)
aTGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcg > 1:2153918/1‑100 (MQ=255)
tGGTGTGGAAATGGTTGGTATAGATGCAAATGGCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgc < 1:2546362/100‑1 (MQ=255)
tgtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcg > 1:2705688/1‑100 (MQ=255)
tgtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcg > 2:3934111/1‑100 (MQ=255)
tgtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcg > 2:1927807/1‑100 (MQ=255)
tgtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcg > 2:1761104/1‑100 (MQ=255)
tgtgGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcg > 1:477670/1‑100 (MQ=255)
ggAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCATGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccg > 1:2373148/1‑98 (MQ=255)
ggAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccg > 2:3045306/1‑98 (MQ=255)
ggAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccg > 2:2632107/1‑98 (MQ=255)
ggAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccg > 1:960528/1‑98 (MQ=255)
gAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccgc > 1:1594498/1‑97 (MQ=255)
gAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAgcgcgcgccgc < 1:2672711/100‑4 (MQ=255)
gttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTg > 1:2237680/1‑100 (MQ=255)
gttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTg < 2:2132888/100‑1 (MQ=255)
gttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTg < 1:34548/100‑1 (MQ=255)
ttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTgg < 1:2146818/100‑1 (MQ=255)
ttggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTgg < 2:1992856/100‑1 (MQ=255)
tggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTggg < 1:639316/100‑1 (MQ=255)
tggtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTggg > 2:2871327/1‑100 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTgggtg < 1:3410630/100‑3 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCg > 1:1774705/1‑100 (MQ=255)
gtATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCg > 2:362131/1‑100 (MQ=255)
tataGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTgggtgt > 1:2361431/1‑97 (MQ=255)
tataGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGt > 2:861184/1‑100 (MQ=255)
tataGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGt > 2:755911/1‑100 (MQ=255)
gATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAgg < 1:2400579/100‑1 (MQ=255)
aTGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAggg > 2:1418665/1‑100 (MQ=255)
aTGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAggg < 2:2935661/100‑1 (MQ=255)
tGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgc > 1:535825/1‑100 (MQ=255)
tGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgc > 2:4008609/1‑100 (MQ=255)
gCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgcc < 1:3229589/100‑1 (MQ=255)
aaTGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgccgcn < 1:4066624/100‑2 (MQ=255)
aaTGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGgccgcc > 1:864656/1‑100 (MQ=255)
aTGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGccgccg < 1:1378251/100‑1 (MQ=255)
cGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGc > 1:2310238/1‑100 (MQ=255)
cGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTCCAGTGTTTTCTCACA‑‑GCACGCGCCGCAGCCTGGGCGGAAGGGCCGCCGGAGc > 2:36899/1‑100 (MQ=255)
gCCTGCAATAGCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCATGGGCGTAAGGGCCGCCgg < 2:1810454/96‑1 (MQ=255)
cTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGa > 1:108702/1‑100 (MQ=255)
cTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGa > 2:4106583/1‑100 (MQ=255)
tGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGAt < 1:4021239/100‑1 (MQ=255)
gCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATa > 2:3366195/1‑100 (MQ=255)
gCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATa > 1:3122290/1‑100 (MQ=255)
gCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGCTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATa > 2:2277907/1‑100 (MQ=255)
cAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAg < 2:535821/100‑1 (MQ=255)
cAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAACGGCCGCCGGAGCCGATAg > 2:3313002/1‑100 (MQ=255)
aaTATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGc < 2:3617888/100‑1 (MQ=255)
aaTATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGc < 2:1069285/100‑1 (MQ=255)
aaTATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGc > 1:2886306/1‑100 (MQ=255)
aaTATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGc < 1:659631/100‑1 (MQ=255)
atatCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCa > 1:3980253/1‑100 (MQ=255)
atatCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCa > 1:128497/1‑100 (MQ=255)
tatCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCaa > 1:3533189/1‑100 (MQ=255)
atCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAAt > 2:3482674/1‑100 (MQ=255)
atCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAAt < 2:1209517/100‑1 (MQ=255)
ccAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATaa < 1:1144354/100‑1 (MQ=255)
ccAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATaa > 2:1778590/1‑100 (MQ=255)
aaCGCCTTTTCAGCAATTTCACGGGCGCTATGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGa > 2:651933/1‑100 (MQ=255)
aaCGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGa > 2:387390/1‑100 (MQ=255)
aCGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGCTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGAt < 2:2280854/100‑1 (MQ=255)
ccTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGt < 2:1593552/100‑1 (MQ=255)
cTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGTCCGCCGGAGCCGATAGCAATAAGATCGtt > 2:1018631/1‑100 (MQ=255)
cTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGtt > 1:2611900/1‑100 (MQ=255)
cTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGtt > 2:4102889/1‑100 (MQ=255)
cTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGtt > 1:1352497/1‑100 (MQ=255)
cAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTg > 1:1632920/1‑100 (MQ=255)
aGCAATTTCACGGGCGCTAAGTTCAGCGTTTTCTAACA‑‑GCGCACGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTgg > 2:1878925/1‑100 (MQ=255)
gCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGc > 1:1528945/1‑100 (MQ=255)
gCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGc < 1:3934154/100‑1 (MQ=255)
gCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGAGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGc > 1:2826818/1‑100 (MQ=255)
gCAATTTCACGGGCGCTAAGTTCAGTGTTTTATAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGc < 2:2825787/100‑1 (MQ=255)
cAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCGGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCt > 1:3545157/1‑100 (MQ=255)
aaTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTg < 2:3222189/100‑1 (MQ=255)
aaTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTg < 1:362135/100‑1 (MQ=255)
aaTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTg > 1:1422762/1‑100 (MQ=255)
aTTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCt > 1:892122/1‑100 (MQ=255)
cACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcacca < 1:1927821/100‑1 (MQ=255)
cACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcacca > 1:1093662/1‑100 (MQ=255)
cACGGGCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGcacca < 2:108702/100‑1 (MQ=255)
ggCGCTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTc < 1:500973/100‑1 (MQ=255)
gcgcTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCa < 1:332066/100‑1 (MQ=255)
gcgcTAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCa > 1:1291559/1‑100 (MQ=255)
tAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGt > 1:907602/1‑100 (MQ=255)
tAAGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGt < 1:4102932/100‑1 (MQ=255)
aaGTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAGGGGCCGCCGGAGCCGATCGCAGTAAGATCGTTTTCTGGCTGCACCACGTCACCGtt > 2:2044743/1‑100 (MQ=255)
gTTCAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTAc > 1:544633/1‑100 (MQ=255)
cAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCgg < 2:1215366/100‑1 (MQ=255)
cAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCgg > 2:2366290/1‑100 (MQ=255)
cAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCgg > 2:2375952/1‑100 (MQ=255)
cAGTGTTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCg > 2:1045201/1‑99 (MQ=255)
gtgtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtg > 2:2124273/1‑100 (MQ=255)
gtgtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtg < 1:3077676/100‑1 (MQ=255)
gtgtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtg > 1:1328389/1‑100 (MQ=255)
gtgtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtg < 1:1089426/100‑1 (MQ=255)
gtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgat < 1:2306722/100‑1 (MQ=255)
gtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgat < 1:1448344/100‑1 (MQ=255)
gtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgat < 2:1746095/100‑1 (MQ=255)
gtTTTCTAACA‑‑GCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGtgat < 2:265431/100‑1 (MQ=255)
||
CGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAGTGTTTTCTAACAGCGCGCGCGCCGCAGCCTGGGCGTAAGGGCCGCCGGAGCCGATAGCAATAAGATCGTTTTCTGGCTGCACCACGTCACCGTTACCGGTGAT > NC_000913/4121780‑4121969
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
