Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F244 I1 R1	118	120.6	6073099	93.5%	5678347	99.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,122,191	(T)_5→4	coding (97/531 nt)	hslV ←	peptidase component of the HslUV protease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,122,187	0	T	.	98.2%	490.4 / 1.1	112	coding (101/531 nt)	hslV	peptidase component of the HslUV protease
Reads supporting (aligned to +/- strand): ref base T (0/2); new base . (48/62); total (48/64)
Fisher's exact test for biased strand distribution p-value = 5.06e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01

Only 100 of 126 total aligned reads displayed.

ATTTCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCTTTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACTATAGTT  >  NC_000913/4122088‑4122282

aTTTCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGTGGACCt                                                                                                 >  2:2045132/1‑100 (MQ=255)

aTTTCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCt                                                                                                 >  2:735075/1‑100 (MQ=255)

aTTTCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCt                                                                                                 >  2:1796314/1‑100 (MQ=255)

aTTTCCAGTTTACGTTCAAACAGTTCGAACACCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCt                                                                                                 <  1:1095236/100‑1 (MQ=255)

  ttCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCttt                                                                                               <  2:924230/100‑1 (MQ=255)

  ttCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCttt                                                                                               >  2:2356484/1‑100 (MQ=255)

   tCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCtttt                                                                                              <  2:87774/100‑1 (MQ=255)

   tCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCtttt                                                                                              >  1:2777872/1‑100 (MQ=255)

    ccAGTTTACGTTCAAACAGTTCGAACAGCGTAAATGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCttttc                                                                                             <  2:1599223/100‑2 (MQ=255)

     cAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCttttca                                                                                            >  1:843189/1‑98 (MQ=255)

     cAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCttttca                                                                                            <  1:1753985/100‑3 (MQ=255)

      aGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCttttcac                                                                                           <  2:358523/100‑4 (MQ=255)

         ttACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGtt                                                                                       <  2:107507/100‑1 (MQ=255)

         ttACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGtt                                                                                       >  1:1650797/1‑100 (MQ=255)

         cgctgTTCGAACTGTTTGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGtt                                                                                       >  2:2783825/5‑100 (MQ=255)

          tACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTg                                                                                      >  1:1062973/1‑100 (MQ=255)

          tACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTg                                                                                      <  2:1784881/100‑1 (MQ=255)

          gctgTTCGAACTGTTTGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTg                                                                                      >  1:2787965/4‑100 (MQ=255)

           aCGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGc                                                                                     <  1:686659/100‑1 (MQ=255)

           aCGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCAATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGc                                                                                     >  2:1373720/1‑100 (MQ=255)

            cGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGcc                                                                                    >  2:2240735/1‑100 (MQ=255)

            cGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGcc                                                                                    <  1:1861080/100‑1 (MQ=255)

            cGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGcc                                                                                    <  2:347289/100‑1 (MQ=255)

             gTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCTGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCt                                                                                   <  1:2557760/100‑1 (MQ=255)

             gTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCt                                                                                   <  1:1116333/100‑1 (MQ=255)

              ttCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCtt                                                                                  >  2:2996888/1‑100 (MQ=255)

               tCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCttt                                                                                 <  1:24569/100‑1 (MQ=255)

                cAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTc                                                                                >  2:1950146/1‑100 (MQ=255)

                 aaaCAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCa                                                                               >  1:2538659/1‑100 (MQ=255)

                    cAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTa                                                                            <  1:2697302/100‑1 (MQ=255)

                      gTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACg                                                                          >  1:1156074/1‑100 (MQ=255)

                       ttCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACgg                                                                         <  2:719544/100‑1 (MQ=255)

                        tCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGt                                                                        <  2:906539/100‑1 (MQ=255)

                         cGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTa                                                                       >  2:585469/1‑100 (MQ=255)

                          gAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTAt                                                                      >  2:1085292/1‑100 (MQ=255)

                             cAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGc                                                                   <  1:200864/100‑1 (MQ=255)

                             cAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGc                                                                   >  2:684746/1‑100 (MQ=255)

                              aGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGcc                                                                  >  1:176702/1‑100 (MQ=255)

                              aGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGcc                                                                  <  1:305001/100‑1 (MQ=255)

                               gCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGccc                                                                 >  2:629751/1‑100 (MQ=255)

                                cGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCTTTTTCACGTTGCCTTTCATTACGGTATTGccc                                                                 <  1:2754460/100‑1 (MQ=255)

                                    naaGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGt                                                            >  2:1878738/2‑100 (MQ=255)

                                     aaGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTg                                                           <  2:2306025/100‑1 (MQ=255)

                                     aaGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTg                                                           <  2:2291450/100‑1 (MQ=255)

                                      aGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTgg                                                          >  2:209409/1‑100 (MQ=255)

                                      aGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTgg                                                          <  1:265931/100‑1 (MQ=255)

                                      aGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTgg                                                          <  1:1608627/100‑1 (MQ=255)

                                      aGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTgg                                                          >  2:1922730/1‑100 (MQ=255)

                                       gCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGc                                                         <  2:1983955/100‑1 (MQ=255)

                                        cATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGcn                                                        <  2:1488001/100‑2 (MQ=255)

                                         aTCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCt                                                       <  2:439919/100‑1 (MQ=255)

                                             gCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGAcc                                                   <  1:585476/100‑1 (MQ=255)

                                             gCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGAcc                                                   >  2:1575485/1‑100 (MQ=255)

                                              cAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCa                                                  <  1:361172/100‑1 (MQ=255)

                                                   ccgcccgcAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCAcc                                             <  1:665516/100‑1 (MQ=255)

                                                    cgcccgcAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCa                                            >  1:2567489/1‑100 (MQ=255)

                                                     gcccgcAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAg                                           <  1:209412/100‑1 (MQ=255)

                                                      cccgcAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGc                                          <  1:1512280/100‑1 (MQ=255)

                                                        cgcAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTGTCACGTTGCCTTTCATTACGGGATTGCCCAACGTGGCCTGACCATCACCAGCGa                                        >  2:2418656/1‑100 (MQ=255)

                                                         gcAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGAt                                       >  1:1269328/1‑100 (MQ=255)

                                                          cAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATg                                      <  1:735082/100‑1 (MQ=255)

                                                          cAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATg                                      <  2:1496004/100‑1 (MQ=255)

                                                           aaaGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGa                                     <  1:397425/100‑1 (MQ=255)

                                                            aaGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGAc                                    <  1:2216998/100‑1 (MQ=255)

                                                             aGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGAcc                                   <  2:1650783/100‑1 (MQ=255)

                                                              gCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACca                                  <  2:2394990/100‑1 (MQ=255)

                                                                ccGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACcaca                                <  2:2012661/100‑1 (MQ=255)

                                                                ccGCGATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACcaca                                <  2:1282715/100‑1 (MQ=255)

                                                                 cgcgATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACAt                               <  1:677901/100‑1 (MQ=255)

                                                                  gcgATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATg                              <  1:2406141/100‑1 (MQ=255)

                                                                   cgATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATgg                             >  2:1752386/1‑100 (MQ=255)

                                                                    gATGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGc                            <  1:2688980/100‑1 (MQ=255)

                                                                     aTGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGGGATGACCACATGGcc                           <  2:478467/100‑1 (MQ=255)

                                                                      taaCTTTGTCGTGGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGc                            <  2:324208/96‑1 (MQ=255)

                                                                      tGACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCg                          <  1:2356505/100‑1 (MQ=255)

                                                                       gACTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGt                         >  2:2664981/1‑100 (MQ=255)

                                                                         cTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTa                       >  2:1484173/1‑100 (MQ=255)

                                                                         cTTTGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTa                       >  2:339601/1‑100 (MQ=255)

                                                                            tGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACgg                    <  2:1244335/100‑1 (MQ=255)

                                                                            tGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACgg                    <  1:203183/100‑1 (MQ=255)

                                                                            tGTCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACgg                    >  1:1710916/1‑100 (MQ=255)

                                                                              tCGTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCg                  <  1:1340118/100‑1 (MQ=255)

                                                                                gTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTa                >  1:1248247/1‑100 (MQ=255)

                                                                                gTTGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTa                >  2:362183/1‑100 (MQ=255)

                                                                                 ttGTACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTAc               <  1:2658921/100‑1 (MQ=255)

                                                                                    tACAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCt            <  1:945464/100‑1 (MQ=255)

                                                                                      cAGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTa          >  1:2416642/1‑100 (MQ=255)

                                                                                       aGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTAc         <  2:1813823/100‑1 (MQ=255)

                                                                                       aGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTAc         <  1:2240755/100‑1 (MQ=255)

                                                                                       aGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTAc         <  1:1752401/100‑1 (MQ=255)

                                                                                       aGACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTAc         <  1:1479757/100‑1 (MQ=255)

                                                                                        naCGGCGGACC‑ATTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGAGATGACCACATGGCCGTTACGGCGTACGCTTACt        >  2:1601223/2‑100 (MQ=255)

                                                                                        gACGGCGGACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACt        <  1:287979/100‑1 (MQ=255)

                                                                                          cggcggACCTTTTTCACCTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACAACATGGCCGTTACGGCGTACGCTTa          <  2:2553675/97‑1 (MQ=255)

                                                                                            gcggACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACTATAg    <  1:2344555/100‑1 (MQ=255)

                                                                                             cggACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACTATAGt   >  2:2923698/1‑100 (MQ=255)

                                                                                             cggACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACTATAGt   <  1:909199/100‑1 (MQ=255)

                                                                                             cggACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACTATAGt   >  1:1255747/1‑100 (MQ=255)

                                                                                              ggACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACtatact   >  2:2032161/1‑97 (MQ=255)

                                                                                              ggACC‑TTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACTATAGtt  >  1:2336325/1‑100 (MQ=255)

ATTTCCAGTTTACGTTCAAACAGTTCGAACAGCGTAAAAGCATCCGCAGTACCGCCCGCAAAGCCCGCGATGACTTTGTCGTTGTACAGACGGCGGACCTTTTTCACGTTGCCTTTCATTACGGTATTGCCCAACGTGGCCTGACCATCACCAGCGATGACCACATGGCCGTTACGGCGTACGCTTACTATAGTT  >  NC_000913/4122088‑4122282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A