Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I1 R1
|
132 |
116.1 |
5785507 |
94.2% |
5449947 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,972,860 |
(T)7→6 |
coding (1003/1194 nt) |
lplT ← |
lysophospholipid transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,972,854 | 0 | T | . | 98.2%
| 476.9
/ 1.3
| 111 | coding (1009/1194 nt) | lplT | lysophospholipid transporter |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base . (44/65); total (46/65) |
| Fisher's exact test for biased strand distribution p-value = 1.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 123 total aligned reads displayed.
CCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCA > NC_000913/2972757‑2972949
|
ccTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttt > 1:2568549/1‑100 (MQ=255)
cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttt < 2:426339/100‑1 (MQ=255)
cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttt < 2:1111048/100‑1 (MQ=255)
tATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttt > 1:244684/1‑100 (MQ=255)
aTCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttttt < 2:220910/100‑1 (MQ=255)
aTCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTATGTACCGCAATCGCATTCCCCGCCCCGACGCtttttt > 2:1947135/1‑100 (MQ=255)
cATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttac < 2:2568531/100‑3 (MQ=255)
cATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttac > 1:726170/1‑98 (MQ=255)
aTTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttacc < 1:2445104/100‑4 (MQ=255)
ttACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttaccc < 2:814419/100‑5 (MQ=255)
tACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTAcccc > 1:1265830/1‑100 (MQ=255)
ccGCCAGCGAGTAAATGCCCAGCATCAACAACATGGAGCTGTTTTAGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGc > 1:1348289/1‑100 (MQ=255)
gtcAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCt > 1:1955623/3‑100 (MQ=255)
gCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTc > 2:1083763/1‑100 (MQ=255)
gCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTc > 1:185716/1‑100 (MQ=255)
cAGCGAGTAAATGCCCAGCATCAACAACATTGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCt < 2:1047825/100‑1 (MQ=255)
gCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGTTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGt < 2:80930/100‑1 (MQ=255)
gCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGt < 2:1922255/100‑1 (MQ=255)
cGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTa < 2:2119739/100‑1 (MQ=255)
aGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGc > 1:2594040/1‑100 (MQ=255)
aGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGc < 2:122044/100‑1 (MQ=255)
aGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTGTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGc < 2:717683/100‑1 (MQ=255)
gTAAATGCCCAGCATCAACAACTTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTa < 1:496866/97‑1 (MQ=255)
aaaTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAAc < 2:942153/100‑1 (MQ=255)
aTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGc > 1:1853183/1‑100 (MQ=255)
tGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCa < 1:2281158/100‑1 (MQ=255)
tGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCa > 2:316133/1‑100 (MQ=255)
gCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCAt < 2:2258388/100‑1 (MQ=255)
gCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCAt > 2:413056/1‑100 (MQ=255)
cccAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCAtt < 1:1417397/100‑1 (MQ=255)
ccAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTg < 1:357642/100‑1 (MQ=255)
gCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGc < 1:344984/100‑1 (MQ=255)
gCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGc < 2:1001312/100‑1 (MQ=255)
gCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGc < 2:1505399/100‑1 (MQ=255)
gCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGc > 2:254482/1‑100 (MQ=255)
cATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGTAACGCATTGAgtg < 1:1947149/100‑3 (MQ=255)
aTCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTTAGCgg > 1:2885977/1‑100 (MQ=255)
aTCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCgg > 1:1759393/1‑100 (MQ=255)
tCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGa < 1:1032333/100‑1 (MQ=255)
caacaaCATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGaa > 1:2727915/1‑100 (MQ=255)
caacaaCATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGaa > 1:17783/1‑100 (MQ=255)
caacaaCATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGaa > 1:1673521/1‑100 (MQ=255)
aacaacATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAAc < 1:1168395/100‑1 (MQ=255)
aacaacATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAAc > 2:20705/1‑100 (MQ=255)
aacaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGAc < 2:1410723/100‑1 (MQ=255)
acaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACa > 1:2857793/1‑100 (MQ=255)
acaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACa < 1:524136/100‑1 (MQ=255)
tGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCACCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACaaaa < 1:128161/100‑1 (MQ=255)
gcgcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACaaaaaa < 2:2262320/100‑1 (MQ=255)
gcgcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACaaaaaa > 1:1813343/1‑100 (MQ=255)
cgcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAg < 1:530119/100‑1 (MQ=255)
gcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGc < 2:1992477/100‑1 (MQ=255)
gcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGc > 1:348927/1‑100 (MQ=255)
cTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcc > 2:806002/1‑100 (MQ=255)
cTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcc < 1:1299568/100‑1 (MQ=255)
cTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcc < 2:936449/100‑1 (MQ=255)
cTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGAAACAACAAAAAAGcc < 2:2131306/100‑1 (MQ=255)
tGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccc < 1:1267638/100‑1 (MQ=255)
gTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcccc < 2:2092572/100‑1 (MQ=255)
tttCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcccccc > 1:1340453/1‑100 (MQ=255)
tttCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcccccc < 2:1813330/100‑1 (MQ=255)
ttCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCa < 1:103747/100‑1 (MQ=255)
ttCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCa < 1:501445/100‑1 (MQ=255)
gCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCTGAACGACAAAAAAGCCCCCCAtaa > 1:2383536/1‑98 (MQ=255)
gCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCa < 1:1083766/100‑1 (MQ=255)
gCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCa < 1:1531153/100‑1 (MQ=255)
ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcccccccacac > 1:2601114/1‑95 (MQ=255)
ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCAc > 2:99033/1‑100 (MQ=255)
ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCAc < 1:846153/100‑1 (MQ=255)
ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCAc > 1:287438/1‑100 (MQ=255)
aGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGcc < 2:738991/100‑1 (MQ=255)
aGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTATTACCCCGCTCCTGTAGCAACGCATTGAAAAAAAAAAAAAAAAAGCCCCCCATCACGcc < 2:2060250/100‑1 (MQ=255)
ggTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTCCCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCa < 1:2017456/100‑1 (MQ=255)
ggTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCa > 1:600402/1‑100 (MQ=255)
ggTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCa < 1:2017546/100‑1 (MQ=255)
tttGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATc < 2:2767990/100‑1 (MQ=255)
tGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAg < 2:2484251/100‑1 (MQ=255)
tGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACAACAAAAAAGCCCCCCATCACGCCAATCAg < 2:1842875/100‑1 (MQ=255)
tACTGCAATCGTCTTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCAGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCa < 2:2627719/100‑1 (MQ=255)
tACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCa < 1:191609/100‑1 (MQ=255)
cTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATc > 1:838908/1‑100 (MQ=255)
tGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATca < 1:1042397/100‑1 (MQ=255)
tGCAATCGCATTCCCCGCCCCAACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATca < 2:700037/100‑1 (MQ=255)
cAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaac > 1:314830/1‑100 (MQ=255)
cAACCGCATTCCCCGCCCCGACGC‑TGTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaac < 2:511837/100‑1 (MQ=255)
aTCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaacaa > 2:771063/1‑100 (MQ=255)
tCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAg < 1:2418528/100‑1 (MQ=255)
gCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGc > 1:1348957/1‑100 (MQ=255)
gCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGc < 1:2752262/100‑1 (MQ=255)
gCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGc > 1:71778/1‑100 (MQ=255)
gCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAAAGAAAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGc < 2:79721/100‑1 (MQ=255)
cATCCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCa < 2:1348284/100‑1 (MQ=255)
ttCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATa < 2:348926/100‑1 (MQ=255)
cccgccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGc < 2:2594021/100‑1 (MQ=255)
ccgccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCt > 1:1730061/1‑100 (MQ=255)
ccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgc > 2:2066519/1‑100 (MQ=255)
ccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgc < 2:1340448/100‑1 (MQ=255)
cgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc < 2:2239806/100‑1 (MQ=255)
cgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc > 1:2565604/1‑100 (MQ=255)
gACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagca < 2:2320287/100‑1 (MQ=255)
|
CCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCA > NC_000913/2972757‑2972949
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
