Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I0 R1
|
432 |
103.0 |
5191697 |
92.7% |
4812703 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,972,860 |
(T)7→6 |
100% |
coding (1003/1194 nt) |
lplT ← |
lysophospholipid transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,972,854 | 0 | T | . | 84.9%
| 320.8
/ 61.0
| 106 | coding (1009/1194 nt) | lplT | lysophospholipid transporter |
| Reads supporting (aligned to +/- strand): ref base T (10/5); new base . (42/48); total (52/54) |
| Fisher's exact test for biased strand distribution p-value = 1.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 118 total aligned reads displayed.
CCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCA > NC_000913/2972757‑2972949
|
ccTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttt < 2:1395565/100‑1 (MQ=255)
cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttt > 1:83788/1‑100 (MQ=255)
cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttt > 2:418313/1‑100 (MQ=255)
cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACACtttt > 2:23478/1‑100 (MQ=255)
tATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttt > 1:74042/1‑100 (MQ=255)
tCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttttta > 2:156714/1‑99 (MQ=255)
cATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttac > 2:2013193/1‑98 (MQ=255)
cATTACCGCCAGCGAGTAAATGCCCACCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACCCttttttac > 1:2230115/1‑98 (MQ=255)
aTTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttacc > 2:1624578/1‑97 (MQ=255)
aTTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttacc > 2:234976/1‑97 (MQ=255)
ttACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttaccc < 1:2031500/100‑5 (MQ=255)
ttACCGCCAGCGAGTAAATGCCCAGCAACAACAACATGGCGCTGTTTTCGTCAGGGTATTGTACTGGAAGAGCATTCCCCGCCGCAACGAttttttacc > 1:923866/1‑96 (MQ=255)
tACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCTGACGC‑TTTTTTAcccc < 2:585124/100‑1 (MQ=255)
tACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTAccc < 1:1440107/100‑1 (MQ=255)
ccGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCTAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGc > 1:846805/1‑100 (MQ=255)
ccGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCg > 1:263648/1‑100 (MQ=255)
ccGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGc > 2:360814/1‑100 (MQ=255)
cGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTACAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCACGCt > 1:170463/1‑100 (MQ=255)
cgatctaGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTcc < 1:1169296/94‑1 (MQ=255)
ccAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTcc < 1:1743656/100‑1 (MQ=255)
cAGCGAGTAAATGCCCATCATCAACAACATTCCTCTGTTTTCGCCAAGGTTTTCTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTcc < 1:2105267/99‑1 (MQ=255)
cAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTcc < 2:1630936/100‑1 (MQ=255)
cAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCt > 1:1473585/1‑100 (MQ=255)
cAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCt > 1:1993191/1‑100 (MQ=255)
aGCGAGTAAATGCCTAGCATCAACAACATCGCGCTGTTTTCGCCAAGTTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTg < 1:2221708/100‑1 (MQ=255)
aGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTg > 1:2162341/1‑100 (MQ=255)
aGCGAGTAAATGCCCAGCATAAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTg > 1:1584345/1‑100 (MQ=255)
gCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGt > 2:2464337/1‑100 (MQ=255)
cGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTTTa > 1:1069600/1‑100 (MQ=255)
cGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTa > 2:261578/1‑100 (MQ=255)
aGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTccagatcg > 2:1169300/1‑94 (MQ=255)
gTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCa > 1:296275/1‑100 (MQ=255)
aaTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAAc > 2:1999677/1‑99 (MQ=255)
aaTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACg < 2:1303721/100‑1 (MQ=255)
aaTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACg < 1:523060/100‑1 (MQ=255)
tGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGc > 2:832097/1‑100 (MQ=255)
gCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCAt < 2:182089/100‑1 (MQ=255)
cccAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCAtt > 2:1300993/1‑100 (MQ=255)
ccAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTg < 1:476025/100‑1 (MQ=255)
cAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGa > 2:941640/1‑100 (MQ=255)
cAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGa > 2:2198554/1‑100 (MQ=255)
cATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCg < 1:711917/100‑1 (MQ=255)
cATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCg < 2:1650008/100‑1 (MQ=255)
aacaacATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAAc > 2:505196/1‑100 (MQ=255)
acaacaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCACTCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGc > 1:907081/1‑94 (MQ=255)
caacaTGGCGCTGTTTTCGCGAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGa > 1:1200815/1‑100 (MQ=255)
aacaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGAc < 1:202759/100‑1 (MQ=255)
aacaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGAc < 2:803644/100‑1 (MQ=255)
acaTGGCGCTGTTTTCGCCAAGGTTTTGTAGTGAAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACa > 1:1698768/1‑100 (MQ=255)
aTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACaa > 2:589441/1‑100 (MQ=255)
gtcgcTGTTTTCGCCAAGGTTTGGTACTGCAATCGCATTGCCCGCCCCGACGC‑TTTTTTACCCCGCGCCTGTAGCAACGCATTGAGCGGAACGACaa < 1:989985/95‑1 (MQ=255)
cgcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAg > 2:1797799/1‑100 (MQ=255)
cgcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAg < 2:1261065/100‑1 (MQ=255)
cTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcc < 2:1585572/100‑1 (MQ=255)
tGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccc < 2:1269509/100‑1 (MQ=255)
gTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTT‑CTCTTCTTCTTTATCAACGCATTGAGCGGAACAACAAAAAAGccc > 1:954636/1‑99 (MQ=255)
gTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcccc > 2:1890774/1‑100 (MQ=255)
ttttCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccccc < 1:1418642/100‑1 (MQ=255)
tttCGCCAAGGTTGTGTACTGCAATCGCATACCCCGCCCCGACG‑ATTTTTGACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccccc < 1:235202/99‑1 (MQ=255)
cGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGCACGACAAAAAAGCCCCCCATc > 1:1147138/1‑100 (MQ=255)
gCCAAGGTTTTGTACTGCCATCGCATTCCCCGCCCCGCCGCTTTTTTTACCGCGCTCCGGGCGCACCCCCCTGAGCGGGACGGCGAAAACGcccccc > 1:2371035/1‑97 (MQ=255)
ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCCCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccgccc > 1:1756892/1‑96 (MQ=255)
ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCAc > 1:2040113/1‑100 (MQ=255)
aGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGcc < 1:1300987/100‑1 (MQ=255)
aGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGcc < 2:1770085/100‑1 (MQ=255)
ggTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCGCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGcc < 2:2450423/100‑1 (MQ=255)
tttGTACTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATc < 2:83789/100‑1 (MQ=255)
tGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCa < 1:589439/100‑1 (MQ=255)
tGTACTGCAATCGCATGCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAAAAGAACAACAAAAAAGCCCCCCCTCACGCCAATCAg < 1:1777729/100‑1 (MQ=255)
tACTGCAATCGCGTTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGCCAAAAAAGCCCCCCATCACGCCACTCa > 1:1521982/1‑98 (MQ=255)
aCTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCAt < 1:234974/100‑1 (MQ=255)
cTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATc < 1:188358/100‑1 (MQ=255)
cTGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATc > 2:554597/1‑100 (MQ=255)
tGCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATca < 2:925307/100‑1 (MQ=255)
ctcAATCGCATTCCCCTCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATca < 1:1512567/98‑1 (MQ=255)
ncAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaa > 2:2018095/2‑100 (MQ=255)
gCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACGACAAAACCACCCATCACGCCAATCAgaa > 1:1117038/1‑95 (MQ=255)
gCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaa > 2:705896/1‑100 (MQ=255)
gCAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaa > 2:2357716/1‑100 (MQ=255)
cAATCGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaac > 2:165048/1‑100 (MQ=255)
atctgCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaaca < 2:275034/96‑1 (MQ=255)
aTCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaaca < 2:1547452/100‑1 (MQ=255)
cGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgg < 2:1901849/100‑1 (MQ=255)
cGCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgg < 2:1583572/100‑1 (MQ=255)
cGCATGCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgg < 1:778922/100‑1 (MQ=255)
gCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgat > 1:275031/1‑98 (MQ=255)
gCATTCCCCGCCCCGACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGc < 2:2175790/100‑1 (MQ=255)
ccccgccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATaag > 2:2588881/1‑98 (MQ=255)
ccccgccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAgg > 2:2333688/1‑100 (MQ=255)
cccgccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGc > 1:2204309/1‑100 (MQ=255)
gccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTgg < 2:1785748/100‑1 (MQ=255)
ccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgc < 2:711119/100‑1 (MQ=255)
ccccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgc < 2:2204324/100‑1 (MQ=255)
cccgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgca < 1:418311/100‑1 (MQ=255)
cgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc < 2:208368/100‑1 (MQ=255)
cgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc < 2:208623/100‑1 (MQ=255)
cgACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc > 1:828053/1‑100 (MQ=255)
cgACGC‑TTTTTTACCCCGCTCCTGGAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCCCGCCAATCAGCATCAACAAGGCATAGGCTGgcag < 1:514993/99‑1 (MQ=255)
cgACGC‑TTTTTTACCCCGCTCCTGAAGCAACGCCTTGAGCGGAACGACAAAAAAGCCCCCCAGCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc < 1:226239/100‑1 (MQ=255)
gACGC‑TTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagca < 1:878463/100‑1 (MQ=255)
|
CCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCA > NC_000913/2972757‑2972949
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
