Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I1 R1
|
132 |
116.1 |
5785507 |
94.2% |
5449947 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,517,951 |
(C)6→7 |
coding (285/522 nt) |
fecI ← |
RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,517,945 | 1 | . | C | 88.5%
| 248.4
/ 25.2
| 78 | coding (291/522 nt) | fecI | RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor |
| Reads supporting (aligned to +/- strand): ref base . (6/3); new base C (39/30); total (45/33) |
| Fisher's exact test for biased strand distribution p-value = 7.26e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGCAG > NC_000913/4517846‑4518041
|
cAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑t > 1:721630/1‑100 (MQ=255)
cAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGGTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑t > 1:2551971/1‑100 (MQ=255)
aGAAACGCGTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑c > 2:538641/1‑100 (MQ=255)
gAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑cc > 2:2491913/1‑100 (MQ=255)
gAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑cc < 1:2535996/100‑1 (MQ=255)
aCGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTGGCGTTCCTCAGGTGAAGGCG‑C‑T‑ccc‑cc < 2:481981/100‑1 (MQ=255)
gCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑ccc‑cccc > 1:1689121/1‑99 (MQ=255)
cTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑ccc‑cccct > 1:2410966/1‑98 (MQ=255)
tCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑ccc‑cccctcc < 1:297534/100‑5 (MQ=255)
cACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑ccc‑cccctccg > 2:1268457/1‑95 (MQ=255)
aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCgg < 2:879957/100‑1 (MQ=255)
aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCgg < 2:2793117/100‑1 (MQ=255)
aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCgg > 2:1859903/1‑100 (MQ=255)
aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCgg < 1:371838/100‑1 (MQ=255)
cGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGc > 1:1711469/1‑100 (MQ=255)
cGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGc < 2:2306059/100‑1 (MQ=255)
gtgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCa < 1:225249/100‑1 (MQ=255)
tgtTTTGCTGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCAt > 1:1546055/1‑100 (MQ=255)
gtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATa > 2:441728/1‑100 (MQ=255)
gtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATa > 1:2435660/1‑100 (MQ=255)
gCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAgcgc > 2:250990/1‑100 (MQ=255)
ccGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGcc < 1:924452/100‑1 (MQ=255)
gTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAg < 1:2109421/100‑1 (MQ=255)
tttAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCatc < 1:1950287/100‑3 (MQ=255)
tttAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGc < 2:1492439/100‑1 (MQ=255)
aGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAgatcggaagag > 2:66602/1‑90 (MQ=255)
aGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCAtc > 2:336475/1‑100 (MQ=255)
gCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCAtct > 2:1314804/1‑100 (MQ=255)
gCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCAtct > 1:952448/1‑100 (MQ=255)
gtatctggagaTGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCAtctc < 2:288081/90‑1 (MQ=255)
ccGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTcc < 2:1595251/100‑1 (MQ=255)
gTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAg < 2:827590/100‑1 (MQ=255)
gTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAg < 1:829195/100‑1 (MQ=255)
cAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATa < 1:1266661/100‑1 (MQ=255)
aGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATAc > 2:2171759/1‑100 (MQ=255)
gCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACg < 1:446104/100‑1 (MQ=255)
cTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCtttt < 1:2187340/100‑1 (MQ=255)
cTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCtttt > 2:1050017/1‑100 (MQ=255)
gTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc > 1:2795253/1‑100 (MQ=255)
tCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc < 2:721628/100‑1 (MQ=255)
cGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCa > 2:865790/1‑100 (MQ=255)
cGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCa > 2:2867099/1‑100 (MQ=255)
aggagTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCGCAGGTGAAGGCG‑C‑T‑CCCACCCTCCGGCATAAGCGCCAGCATCTCCAGATACCCTTTTTCCAgc > 2:1249781/1‑100 (MQ=255)
ggagTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAgcg > 2:2809841/1‑100 (MQ=255)
agTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGcgcg < 2:79350/100‑1 (MQ=255)
gTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGt > 2:598022/1‑100 (MQ=255)
gTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGt > 2:2321937/1‑100 (MQ=255)
tGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGttt > 1:44251/1‑100 (MQ=255)
tAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCg < 2:1842172/100‑1 (MQ=255)
gTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGa > 1:268404/1‑100 (MQ=255)
gTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGa > 2:2211680/1‑100 (MQ=255)
gTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGa > 2:2243123/1‑100 (MQ=255)
gTCTCGAGTTGGCGTTCGCGTTCCTCAGGTGAAGGCG‑CAC‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGa > 2:1785238/1‑100 (MQ=255)
ctcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaaa > 2:739432/1‑100 (MQ=255)
ctcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaaa < 2:2003544/100‑1 (MQ=255)
tcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAAc > 1:2312726/1‑100 (MQ=255)
cGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACa < 1:2243136/100‑1 (MQ=255)
gTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGt > 1:506854/1‑100 (MQ=255)
ttGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTc < 1:2577541/100‑1 (MQ=255)
tGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGCCGAAAcgcgctg < 2:1689108/100‑7 (MQ=255)
ggCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTcca > 1:612338/1‑100 (MQ=255)
ggCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTcca > 1:2489227/1‑100 (MQ=255)
cTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccacc > 1:1339481/1‑100 (MQ=255)
cTTTCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccacc < 1:250991/100‑1 (MQ=255)
cTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccacca > 1:1290696/1‑100 (MQ=255)
ttCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCAt < 1:1314809/100‑1 (MQ=255)
tCGCGTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATc > 1:223794/1‑100 (MQ=255)
cgcgTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAACATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCa > 1:2642419/1‑100 (MQ=255)
gcgTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCAc > 2:1094126/1‑100 (MQ=255)
gcgTTCCTCAGGTGAAGGCG‑C‑T‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCAcg > 2:1985306/1‑100 (MQ=255)
gTTCCTCAGGTGCCGGCGCC‑C‑CCC‑CCCTCCGGCATCAGCGACAGCATCTCCAGCTCCGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCa < 2:2410950/97‑1 (MQ=255)
gTTCCTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCAcgc > 1:2185183/1‑100 (MQ=255)
ccTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGtt > 1:1697069/1‑100 (MQ=255)
cTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGttt > 2:2074474/1‑100 (MQ=255)
cTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGttt < 2:506852/100‑1 (MQ=255)
cTCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGtt > 1:485343/1‑99 (MQ=255)
tCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg < 2:2185170/100‑1 (MQ=255)
tCAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg > 1:547122/1‑100 (MQ=255)
cAGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTgg < 1:441729/100‑1 (MQ=255)
aGGTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGc < 2:1711456/100‑1 (MQ=255)
ggTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCg > 1:1207263/1‑100 (MQ=255)
ggTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCg > 2:293777/1‑100 (MQ=255)
gTGAAGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGa > 1:818040/1‑100 (MQ=255)
ttccgatc‑T‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAg < 1:479159/93‑1 (MQ=255)
aaGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAg > 2:567130/1‑100 (MQ=255)
aaGGCG‑C‑TCCCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAg < 2:1808640/100‑1 (MQ=255)
ggCG‑C‑T‑ACC‑CCCTCCGGCATATGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGAt < 2:2727344/95‑1 (MQ=255)
cg‑c‑T‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGCag > 1:1081297/1‑100 (MQ=255)
|
CAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGGCG‑C‑T‑CCC‑CCCTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGCAG > NC_000913/4517846‑4518041
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
