Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I0 R1
|
432 |
103.0 |
5191697 |
92.7% |
4812703 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,517,951:1 |
(C)6→7 |
100% |
coding (285/522 nt) |
fecI ← |
RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,517,945 | 1 | . | C | 74.0%
| 240.5
/ 91.3
| 96 | coding (291/522 nt) | fecI | RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor |
| Reads supporting (aligned to +/- strand): ref base . (16/9); new base C (34/37); total (50/46) |
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 106 total aligned reads displayed.
CAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGC > NC_000913/4517846‑4518039
|
cAGAAACGCTTCACGTGTTTGGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑Ct > 1:1579272/1‑100 (MQ=255)
aGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑c < 2:1403168/100‑1 (MQ=255)
aGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑c < 2:1186830/100‑1 (MQ=255)
gAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cc > 1:534616/1‑100 (MQ=255)
aaaCGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑ccc < 1:1326098/100‑1 (MQ=255)
cGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cccc‑c‑c > 1:1225623/1‑100 (MQ=255)
ttCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cccc‑c‑cctc < 2:716079/100‑4 (MQ=255)
ttCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTcc > 2:1848957/1‑100 (MQ=255)
tCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cccc‑c‑cctcc < 1:2427393/100‑5 (MQ=255)
aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCgg > 2:2592147/1‑100 (MQ=255)
aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGc > 2:1379328/1‑100 (MQ=255)
aCGTGTTTTGCCGGTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCAGGTTGCCTTGCGCGTTCCTCCGGTGAAGG‑CG‑CC‑cccg‑c‑ccgccg > 2:2321471/1‑94 (MQ=255)
cGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCa < 2:203905/100‑1 (MQ=255)
cGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCa > 2:16223/1‑100 (MQ=255)
gtgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCa < 2:1869696/100‑1 (MQ=255)
gtgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGCGTCTCCAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CGCCC‑CCCC‑C‑CTCCgg < 1:226174/98‑1 (MQ=255)
tgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCAt < 1:773382/100‑1 (MQ=255)
tgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCAt > 2:2564866/1‑100 (MQ=255)
gtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATa < 2:709363/100‑1 (MQ=255)
gtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATaa > 1:696102/1‑100 (MQ=255)
tttGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAg > 2:860778/1‑100 (MQ=255)
tttGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAg < 2:1519754/100‑1 (MQ=255)
tGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAgcg < 2:1102563/100‑1 (MQ=255)
gCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAgcgc > 1:729479/1‑100 (MQ=255)
cGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCa < 2:2144567/100‑1 (MQ=255)
cGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAg < 2:1010436/100‑1 (MQ=255)
gTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAg > 1:2169648/1‑100 (MQ=255)
tttAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCa < 1:1877679/100‑1 (MQ=255)
tAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCAt > 2:446042/1‑100 (MQ=255)
aGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCAtct > 1:2213634/1‑100 (MQ=255)
gCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCCTAAGCGCCAGCAtct > 2:1145810/1‑100 (MQ=255)
gCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCAtct > 2:2184056/1‑100 (MQ=255)
cccGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTcc < 2:177662/100‑1 (MQ=255)
ccGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTcc < 2:563059/100‑1 (MQ=255)
cGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCa < 2:1565930/100‑1 (MQ=255)
cGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCa < 2:1782775/100‑1 (MQ=255)
gTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGa < 2:1225627/100‑1 (MQ=255)
tCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGAt > 2:1375827/1‑100 (MQ=255)
ccAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGAt < 2:2584261/100‑1 (MQ=255)
cAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATa < 1:342982/100‑1 (MQ=255)
cAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATa > 1:1828109/1‑100 (MQ=255)
cAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATa > 1:1760203/1‑100 (MQ=255)
tGCTGTCGAGGAGTTGTCGGGTCTCGAGTTGGCTTTCGCGTTACTCAGGTGAGGG‑CG‑CTCCCCC‑C‑CTTCGGCCTAAGCGCCAGCCTCCCCAgtt > 1:1987809/1‑92 (MQ=255)
tGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCttttt < 2:1858063/100‑1 (MQ=255)
gTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTc > 1:265112/1‑100 (MQ=255)
tCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCTCCAGCATCTCCAGATACGCTTTTTcc < 2:1579281/100‑1 (MQ=255)
tCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc < 1:742478/100‑1 (MQ=255)
tCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc < 1:2002317/100‑1 (MQ=255)
cGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCa > 1:1032420/1‑100 (MQ=255)
cGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCa > 1:1987179/1‑99 (MQ=255)
cGAGGAGTTGGAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc < 1:2093621/99‑1 (MQ=255)
gaggagTTGTAGGGTCTCGAGTTGGCTTTCGCGTTGCTCAGGTGAAGG‑CG‑CT‑CCCCAC‑CTCCGGCATACGCGCCCGCATCTCCCGATACGCTTTTTcc > 1:1725498/1‑98 (MQ=255)
gaggagTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAgc > 2:45283/1‑100 (MQ=255)
tgttaggTCTCGGGGTGGCTTTCGCCGTCCCCAAGTGAAGGCCC‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGtt < 2:1429300/95‑1 (MQ=255)
gTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCg > 1:468963/1‑100 (MQ=255)
tcgggTCTTGAGTGGTTTGTCGCTTTCCTCTGGTAAAGG‑CG‑CT‑CCCC‑CGCTCCGGCATAAGCGTCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCg < 1:847239/98‑1 (MQ=255)
tAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCg < 2:573573/100‑1 (MQ=255)
aGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCgg < 2:2295169/100‑1 (MQ=255)
aGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCgg < 1:1525835/100‑1 (MQ=255)
aGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAgcgagatcggaa > 1:902733/1‑91 (MQ=255)
ggTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCTGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCg < 1:1381525/100‑1 (MQ=255)
tctcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaa > 2:1778430/1‑100 (MQ=255)
ctcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaaa > 1:127407/1‑100 (MQ=255)
cgcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaa < 2:44426/97‑1 (MQ=255)
tcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAAc > 1:2181414/1‑100 (MQ=255)
tcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAAc < 1:939553/100‑1 (MQ=255)
cGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACa > 2:2310328/1‑100 (MQ=255)
cGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACa < 2:1672489/100‑1 (MQ=255)
cGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACa > 1:2167169/1‑100 (MQ=255)
aGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAgg < 2:2062010/100‑1 (MQ=255)
aGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAgg < 1:516828/100‑1 (MQ=255)
gTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGt > 2:897220/1‑100 (MQ=255)
gTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGt < 1:1207963/100‑1 (MQ=255)
ttGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTc < 2:448490/100‑1 (MQ=255)
ggCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccac > 1:2590072/1‑100 (MQ=255)
gCTTTCGCGTTCCTCAGGTGAAGT‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGt < 1:1270408/96‑1 (MQ=255)
cTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCTGCTCGTTTCCGCGCAACAGGTccacc > 1:43997/1‑100 (MQ=255)
tttCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccacca < 2:1139001/100‑1 (MQ=255)
tttCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccacca < 1:2111424/100‑1 (MQ=255)
tCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATc > 2:360568/1‑100 (MQ=255)
cgcgTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCa > 2:1582614/1‑100 (MQ=255)
gcgTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCAc > 1:1770019/1‑100 (MQ=255)
ccTCAGGTGACGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGGTTCGGCGAAACAGGTCCACCATCCcgcgat > 1:1574897/1‑98 (MQ=255)
ccTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGtt > 2:1890439/1‑100 (MQ=255)
cTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGttt > 2:1695877/1‑100 (MQ=255)
cTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg > 1:445365/1‑100 (MQ=255)
cTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg > 1:1850159/1‑100 (MQ=255)
tCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg < 1:1453216/100‑1 (MQ=255)
cAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACACTTTTTCCAGCGAGTTTGGGCGAACAAGGTCCACCATCACGCGttt > 1:1776580/1‑98 (MQ=255)
aGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGc > 2:2103722/1‑100 (MQ=255)
ggTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCg > 2:1794362/1‑100 (MQ=255)
ggTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCg > 2:1039138/1‑100 (MQ=255)
gTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGa < 1:202827/100‑1 (MQ=255)
tGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGAt < 1:1454492/100‑1 (MQ=255)
tGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATa > 1:720549/1‑100 (MQ=255)
aaGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAg < 2:857773/100‑1 (MQ=255)
aGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGt > 2:105025/1‑100 (MQ=255)
aGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGt > 2:108532/1‑100 (MQ=255)
gg‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGc > 2:2578728/1‑100 (MQ=255)
g‑cg‑cTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGc < 2:2005364/100‑1 (MQ=255)
|
CAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGC > NC_000913/4517846‑4518039
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
