Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F210 I1 R1
|
75 |
123.0 |
6181441 |
93.9% |
5804373 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,459,293 |
(G)5→6 |
coding (955/1482 nt) |
gspE → |
general secretory pathway component, cryptic |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,459,288 | 1 | . | G | 96.9%
| 335.5
/ 2.9
| 97 | coding (950/1482 nt) | gspE | general secretory pathway component, cryptic |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (28/65); total (30/67) |
| Fisher's exact test for biased strand distribution p-value = 2.29e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 118 total aligned reads displayed.
TGGAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑GGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTG > NC_000913/3459189‑3459380
|
tGGAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtgg‑t < 1:196449/100‑1 (MQ=255)
ggAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtgg‑t‑g > 2:1093745/1‑100 (MQ=255)
gAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtgg‑t‑gg > 1:390708/1‑100 (MQ=255)
aaGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggg < 2:123577/100‑1 (MQ=255)
aaGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggg > 2:72991/1‑100 (MQ=255)
aaGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggg < 2:1670836/100‑1 (MQ=255)
aaGGCATTGGGCAAACGCAGGTCAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCGGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggg < 2:2849894/100‑1 (MQ=255)
ggCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggggg < 2:611762/100‑1 (MQ=255)
gacATTGGGCAAACGCAGGCGAATACCCGCGTGGATATGTCGTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggggg < 2:1835188/98‑1 (MQ=255)
gCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑gggggg < 1:814404/100‑2 (MQ=255)
gCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑gggggg < 1:2666912/100‑2 (MQ=255)
cATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑gggggga > 2:2126101/1‑98 (MQ=255)
aTTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑GGGGGgaa > 2:2498459/1‑100 (MQ=255)
ttGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggggggaaa > 1:1364210/1‑96 (MQ=255)
tGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggggggaaat > 2:2312120/1‑95 (MQ=255)
tGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggggggaaat > 1:1445908/1‑95 (MQ=255)
gggCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCAtgg‑t‑gaagtatggcg < 1:1757765/100‑11 (MQ=255)
gggCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑ggggggcaatt > 2:2905375/1‑94 (MQ=255)
gggCAAACGCAGGTAAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATAG‑TGGGGGGAAAtt < 1:2920358/100‑1 (MQ=255)
gCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCg < 2:61426/100‑1 (MQ=255)
gCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCg < 2:1551060/100‑1 (MQ=255)
cAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGt < 2:1160116/100‑1 (MQ=255)
cAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGt < 1:7714/100‑1 (MQ=255)
cAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGt > 1:352753/1‑100 (MQ=255)
aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTg < 1:286818/100‑1 (MQ=255)
aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTg < 1:2979829/100‑1 (MQ=255)
aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTg < 1:1320199/100‑1 (MQ=255)
aaaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTg < 1:1524406/100‑1 (MQ=255)
aaaCGCAGGGGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTg < 1:2031595/100‑1 (MQ=255)
aaCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGa < 2:2247997/100‑1 (MQ=255)
aCGGAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGAt < 1:224946/100‑1 (MQ=255)
aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGAt < 1:2931054/100‑1 (MQ=255)
aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGAt < 1:1130066/100‑1 (MQ=255)
aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGAt < 1:1732718/100‑1 (MQ=255)
aCGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGAt > 1:2742909/1‑100 (MQ=255)
cGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATa > 2:462988/1‑100 (MQ=255)
gCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATAc < 2:1871653/100‑1 (MQ=255)
aGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAg < 2:124855/100‑1 (MQ=255)
gTGGATTCCCGTTTTGATGTGGCTTTCGCTCGCGTCCTGCGCGCCATACTTCGCCAGGACCCGTATGTCGTCATGG‑TGGGGGGAAATTCGTGAt < 2:2910509/94‑1 (MQ=255)
gAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAAc < 2:500722/100‑1 (MQ=255)
gAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAAc > 1:1946930/1‑100 (MQ=255)
aTACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACcg > 2:2258577/1‑100 (MQ=255)
tACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACcgc > 2:2905314/1‑100 (MQ=255)
cccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCgcgc > 2:891817/1‑100 (MQ=255)
cccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCgcgc < 2:1764143/100‑1 (MQ=255)
ccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCa < 1:535666/100‑1 (MQ=255)
ccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCa < 1:387218/100‑1 (MQ=255)
ccGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCa < 2:2385603/100‑1 (MQ=255)
cGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAg < 1:1093755/100‑1 (MQ=255)
cGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAg < 1:1054385/100‑1 (MQ=255)
ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGCTGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc > 1:1778953/1‑100 (MQ=255)
ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc < 2:1466071/100‑1 (MQ=255)
ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc < 1:106604/100‑1 (MQ=255)
ggATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGc > 1:1281424/1‑100 (MQ=255)
atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg < 1:737863/100‑1 (MQ=255)
atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg < 1:1269089/100‑1 (MQ=255)
atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg < 1:72991/100‑1 (MQ=255)
atatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCgg < 2:148963/100‑1 (MQ=255)
tatGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAACTTCGTGATACAGAAACCGCGCAGATCGCgg > 1:1348167/1‑99 (MQ=255)
atGTCTTTCGCTCGCGGCCTGCGCGCCAGACTTAGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGtt < 2:546580/100‑1 (MQ=255)
ttCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGTATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGcc < 1:2586286/100‑1 (MQ=255)
ttCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGcc > 2:608117/1‑100 (MQ=255)
tcgctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCt < 1:2059697/100‑1 (MQ=255)
tcgctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCt > 2:703971/1‑100 (MQ=255)
gctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCg < 1:2717895/100‑1 (MQ=255)
ctcgcGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGc > 1:1357681/1‑100 (MQ=255)
cgcgGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTc < 2:1705558/100‑1 (MQ=255)
ccTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCgg < 1:2905344/100‑1 (MQ=255)
ccTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCgg < 1:1396279/100‑1 (MQ=255)
gcgcgcCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCa > 2:1173764/1‑100 (MQ=255)
cgcgcCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCAt > 1:2100366/1‑100 (MQ=255)
gcgcCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATc < 2:494470/100‑1 (MQ=255)
gcCATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTg < 1:145214/100‑1 (MQ=255)
ccATACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTgg > 2:2412595/1‑100 (MQ=255)
tACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTAc < 2:2365742/100‑1 (MQ=255)
tACTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTAc < 1:1965152/100‑1 (MQ=255)
cTTCGCCAGGACCCGGATGTCGTCATGGCG‑GGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTActc > 2:50115/1‑100 (MQ=255)
cTTCGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTActc > 1:1775638/1‑100 (MQ=255)
cGCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCTGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCa < 2:581326/100‑1 (MQ=255)
gCCAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCaa > 1:3090512/1‑100 (MQ=255)
ccAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAac < 1:2312143/100‑1 (MQ=255)
ccAGGACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTCATACATAAACCGCGCATATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAac < 2:2510365/100‑1 (MQ=255)
gACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTc < 2:856532/100‑1 (MQ=255)
gACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTc < 1:324409/100‑1 (MQ=255)
gACCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTc < 2:1289636/100‑1 (MQ=255)
aCCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTcc < 2:2971940/100‑1 (MQ=255)
aCCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTcc < 2:1423666/100‑1 (MQ=255)
aCCCGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTcc < 2:1364198/100‑1 (MQ=255)
ccgttaTGTCGTCATGG‑TCGGGGGAAATTCGTTTTACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCTGCCATCTGGTACTCGCAac < 2:894516/89‑1 (MQ=255)
cccGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCca > 1:1370518/1‑100 (MQ=255)
cccGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGACCATCTGGTACTCTCAACACTCca > 1:1521362/1‑100 (MQ=255)
ccGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCcac < 2:390706/100‑1 (MQ=255)
ccGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCcac < 2:327402/100‑1 (MQ=255)
ccGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCcac < 1:2126124/100‑1 (MQ=255)
ccGGATGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCca < 2:1384901/99‑1 (MQ=255)
ggAGGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCGCGCTCACCGGCCATCTGGTACTCTCAACACTcc < 2:226156/96‑1 (MQ=255)
tGTCGTCATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTaa < 1:2826883/100‑1 (MQ=255)
gtcgtcATGG‑TGGGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAAc < 1:703974/100‑1 (MQ=255)
tccgatct‑ggGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTg < 2:781593/93‑1 (MQ=255)
tcATGG‑TGGGGGGAAACTCGTGATACAGAAACCGCGCAGATTCCGGTCCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTg < 2:2163202/100‑1 (MQ=255)
|
TGGAAGGCATTGGGCAAACGCAGGTGAATACCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGG‑T‑GGGGGAAATTCGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAGTG > NC_000913/3459189‑3459380
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
