Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F125 I0 R1	65	108.6	5319566	96.1%	5112102	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,952,380	G→A	77.8%	L60L (CTG→CTA)	ilvM →	acetolactate synthase 2 small subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,952,380	0	G	A	77.8%	215.3 / 65.4	117	L60L (CTG→CTA)	ilvM	acetolactate synthase 2 small subunit
Reads supporting (aligned to +/- strand): ref base G (13/13); new base A (47/44); total (60/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.66e-01

Only 100 of 118 total aligned reads displayed.

TTTCCACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGAATAT  >  NC_000913/3952284‑3952479

tttCCACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGttt                                                                                                  <  2:1669442/100‑1 (MQ=255)

  tCCACGTCTGCTCGATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGCCCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAg                                                                                                <  2:2217355/100‑1 (MQ=255)

  tCCACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAg                                                                                                <  2:797761/100‑1 (MQ=255)

   ccACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTTGACTTACTGTTTAGt                                                                                               >  1:963284/1‑100 (MQ=255)

   ccACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGt                                                                                               >  1:1383928/1‑100 (MQ=255)

    cACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTc                                                                                              <  2:950431/100‑1 (MQ=255)

    cACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTc                                                                                              <  1:290596/100‑1 (MQ=255)

      cGTCTGCTCACTGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCTAGGCCACGGTCGGTCGACTTACTGTTTAGTCAg                                                                                            <  2:1737648/100‑1 (MQ=255)

      cGTCTGCTCAATGAATATGGCCGCCTCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCTGCCCACGGTCGGTCGACTTACTATTTAGTCAg                                                                                            <  1:2519534/100‑1 (MQ=255)

      cGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAg                                                                                            >  2:2351470/1‑100 (MQ=255)

      cGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAg                                                                                            <  2:2181602/100‑1 (MQ=255)

        tCTGCTCAATGAATATGGCCGCGGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGtt                                                                                          >  2:1539063/1‑100 (MQ=255)

         cTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGGCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTta                                                                                         <  2:1419054/100‑1 (MQ=255)

         cTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTta                                                                                         >  2:2053086/1‑100 (MQ=255)

         cTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTta                                                                                         <  2:1731079/100‑1 (MQ=255)

         cTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATCGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTta                                                                                         <  2:1470609/100‑1 (MQ=255)

          tGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTtaa                                                                                        >  2:1652126/1‑100 (MQ=255)

           gCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTtaaa                                                                                       >  1:2354195/1‑100 (MQ=255)

            cTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTtaaat                                                                                      >  2:1471073/1‑100 (MQ=255)

             tCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTtaaata                                                                                     >  2:1233084/1‑100 (MQ=255)

              cAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTtaaataa                                                                                    >  2:1998890/1‑100 (MQ=255)

              cAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTtaaataa                                                                                    >  2:1673908/1‑100 (MQ=255)

                aTGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAAc                                                                                  >  2:1581407/1‑100 (MQ=255)

                aTGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAAc                                                                                  >  1:582643/1‑100 (MQ=255)

                 tGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACt                                                                                 <  1:1998909/100‑1 (MQ=255)

                 tGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACt                                                                                 >  2:2595891/1‑100 (MQ=255)

                 tGAATATAGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACt                                                                                 >  1:1706792/1‑100 (MQ=255)

                   aaTATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACtgg                                                                               <  2:207975/100‑1 (MQ=255)

                    atatGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTTGACTTACTGTTTAGTCAGTTAAATAAACtggt                                                                              <  2:1427858/100‑1 (MQ=255)

                    atatGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTTGACTTACTGTTTAGTCAGTTAAATAAACtggt                                                                              >  1:1763262/1‑100 (MQ=255)

                       tGGCTGCCGCCAGCGATGCACAAAATATAAATATCTTATTTATCGTTGCAAGCAAACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACtggtgg                                                                            <  2:613342/99‑1 (MQ=255)

                       tGGCGGCCGCGAGCGATGCACAAAATATAAATATCGAATTGAGCGTTGCCAGCCCACGGTCGGTTGACTTACTGTTTAGTCAGTTAAATAAACtggtg                                                                             <  2:2107864/98‑1 (MQ=255)

                       tGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGa                                                                           >  1:1204901/1‑100 (MQ=255)

                        ggCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGAc                                                                          >  2:1062651/1‑100 (MQ=255)

                         gccgccgccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACg                                                                         >  2:1754494/1‑100 (MQ=255)

                         gccgccgccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACg                                                                         >  1:1767078/1‑100 (MQ=255)

                         gccgccgccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTAATATTTAGTCAGTTAAATAAACTGGTGGACg                                                                         >  1:410905/1‑100 (MQ=255)

                             ccgccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGc                                                                     <  2:1384628/100‑1 (MQ=255)

                             ccgccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGc                                                                     <  2:1963505/100‑1 (MQ=255)

                               gccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGcac                                                                   <  2:634022/100‑1 (MQ=255)

                               gccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGcac                                                                   <  2:2148750/100‑1 (MQ=255)

                                cttccgatctacaAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGcaca                                                                  <  1:2589919/90‑1 (MQ=255)

                                ccAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGcaca                                                                  <  1:2162674/100‑1 (MQ=255)

                                   gCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGt                                                               >  1:390192/1‑100 (MQ=255)

                                    cGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTAGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGtt                                                              >  1:2216690/1‑100 (MQ=255)

                                     gATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTg                                                             <  1:1693223/100‑1 (MQ=255)

                                      aTGCACAAAATATAAATATCGAATTTACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGc                                                            <  1:740694/100‑1 (MQ=255)

                                       tGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGc                                                            <  1:1233096/99‑1 (MQ=255)

                                         cacaAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCAt                                                         >  1:1088687/1‑100 (MQ=255)

                                         cacaAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCAt                                                         >  2:620620/1‑100 (MQ=255)

                                          acaAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTCTAGTCAGTTAAATAAACTGGTGGACGTCGcacaagatcggaag                                                        >  2:2589888/1‑90 (MQ=255)

                                          acaAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATc                                                        >  1:113662/1‑100 (MQ=255)

                                           caAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTTGACTTACTGTTTAGTAAGTTAAATAAAATGGTGGAAGTAGAACACGTTGACAtat                                                       >  1:595022/1‑98 (MQ=255)

                                            aaaaTATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTg                                                      <  2:706022/100‑1 (MQ=255)

                                             aaatataaatatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGc                                                     <  1:2274733/100‑1 (MQ=255)

                                              aatataaatatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGcc                                                    <  2:651865/100‑1 (MQ=255)

                                              aatataaatatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGcc                                                    <  2:51414/100‑1 (MQ=255)

                                                  taaatatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCagag                                                <  2:1336638/100‑1 (MQ=255)

                                                    actatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGca                                              <  2:1533719/98‑1 (MQ=255)

                                                    aatatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGca                                              <  1:1604920/100‑1 (MQ=255)

                                                    aatatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGca                                              <  2:647077/100‑1 (MQ=255)

                                                     atatCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGcac                                             <  2:410902/100‑1 (MQ=255)

                                                       atcgaatcgaCCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGcaca                                            >  2:1863414/1‑99 (MQ=255)

                                                       atCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACaa                                           >  1:758289/1‑100 (MQ=255)

                                                         cGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAAcc                                         <  1:1074127/100‑1 (MQ=255)

                                                         cGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAAcc                                         >  1:1406642/1‑100 (MQ=255)

                                                         cGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAAcc                                         <  2:2290031/100‑1 (MQ=255)

                                                           aaTTGACCGTTGCCAGCCCACGGTCGGTCGATTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACcac                                       <  1:103346/100‑1 (MQ=255)

                                                            aTTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACcaca                                      >  2:1559710/1‑100 (MQ=255)

                                                            aTTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACCGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACCACcaca                                      >  2:1566965/1‑100 (MQ=255)

                                                              tGACCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATc                                    <  1:1507263/100‑1 (MQ=255)

                                                                aCCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATcac                                  >  2:2241728/1‑100 (MQ=255)

                                                                aCCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATcac                                  >  2:325084/1‑100 (MQ=255)

                                                                aCCGTTGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATcac                                  <  1:2595922/100‑1 (MQ=255)

                                                                    ttGCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCacaaca                              <  2:655425/100‑1 (MQ=255)

                                                                      gCCAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACaaa                            >  1:556849/1‑100 (MQ=255)

                                                                       ccAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAAt                           >  2:2467421/1‑100 (MQ=255)

                                                                        cAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACATTGCCATCTGCAAGAGCACAACCACATCACAACaaa                            >  1:880561/1‑98 (MQ=255)

                                                                        cAGCCCACGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATc                          >  2:174498/1‑100 (MQ=255)

                                                                             cACGGTCGGTCGACTTACTATATAGTCAATTAAATAACCTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCcgc                       >  2:1678816/1‑98 (MQ=255)

                                                                              aCGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGcc                    <  1:2053108/100‑1 (MQ=255)

                                                                              aCGGTCGGTCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGcc                    <  2:2354165/100‑1 (MQ=255)

                                                                               cggtcggtCGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCt                   >  2:1562446/1‑100 (MQ=255)

                                                                                ggtcggtcGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTg                  >  2:181377/1‑100 (MQ=255)

                                                                                ggtcggtcGACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCAAGAGCAAAACCACATCACAACAAATCCGCGCCTg                  >  1:700994/1‑100 (MQ=255)

                                                                                    ggttgACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAgcg              <  2:1763245/96‑1 (MQ=255)

                                                                                      ttgACTTATTATTTAGTTAGTTAAATATTCTGGTGGATGTCGCACATGTTGCCATCTGCCATAGCACAACCACATCACAACTAATCCGCGCCTGAGCGCa            <  2:2212076/98‑1 (MQ=255)

                                                                                      tcgACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCa            <  2:1706776/100‑1 (MQ=255)

                                                                                       cgACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCaa           >  2:733054/1‑100 (MQ=255)

                                                                                       cgACTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCaa           >  2:2307007/1‑100 (MQ=255)

                                                                                         aCTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCaaaa         <  1:2266992/100‑1 (MQ=255)

                                                                                          cTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAg        <  2:1343653/100‑1 (MQ=255)

                                                                                          cTTACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAg        >  1:252866/1‑100 (MQ=255)

                                                                                            tACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGa      >  1:1829020/1‑100 (MQ=255)

                                                                                            tACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGa      <  1:1581423/100‑1 (MQ=255)

                                                                                            tACTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGa      >  2:2398810/1‑100 (MQ=255)

                                                                                             aCTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGaa     <  1:1439870/100‑1 (MQ=255)

                                                                                             aCTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGaa     >  2:908446/1‑100 (MQ=255)

                                                                                             aCTATTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGaa     >  2:1439856/1‑100 (MQ=255)

                                                                                                gTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGAatat  >  2:109090/1‑100 (MQ=255)

TTTCCACGTCTGCTCAATGAATATGGCCGCCGCCAGCGATGCACAAAATATAAATATCGAATTGACCGTTGCCAGCCCACGGTCGGTCGACTTACTGTTTAGTCAGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGAATAT  >  NC_000913/3952284‑3952479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A