Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F191 I0 R1
|
105 |
142.7 |
6924153 |
96.8% |
6702580 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,967,887 |
G→A |
56.2% |
A183V (GCC→GTC) |
ptsP ← |
PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,967,887 | 0 | G | A | 56.2%
| 61.0
/ 206.9
| 160 | A183V (GCC→GTC) | ptsP | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| Reads supporting (aligned to +/- strand): ref base G (32/38); new base A (46/44); total (78/82) |
| Fisher's exact test for biased strand distribution p-value = 5.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 164 total aligned reads displayed.
AGCGCCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATAGCTGCCA > NC_000913/2967788‑2967986
|
aGCGCCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCgg < 2:2155957/100‑1 (MQ=255)
gcgcCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGc < 1:2674535/100‑1 (MQ=255)
gcgcCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGc < 1:3284838/100‑1 (MQ=255)
gcCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGc < 1:1208492/98‑1 (MQ=255)
ccccGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAACGGTAACGTGGCATCCTGCCAGCCTTCGGCAAt > 2:1012002/1‑100 (MQ=255)
cccGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATc < 1:1440826/100‑1 (MQ=255)
ggTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGcc < 1:821661/100‑1 (MQ=255)
gTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCca < 1:3397663/100‑1 (MQ=255)
cAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCcaca > 1:837417/1‑100 (MQ=255)
cAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCcaca < 2:155150/100‑1 (MQ=255)
tCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCa > 2:747733/1‑100 (MQ=255)
cGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAg > 1:2862536/1‑100 (MQ=255)
gTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGTAATCGCCACACCAgg < 2:505543/100‑1 (MQ=255)
gTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAgg > 2:1930291/1‑100 (MQ=255)
gTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAgg < 1:225487/100‑1 (MQ=255)
cgcgTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGTCAGCCTTCGACAATCGCCACACCAGGtgc < 2:695131/100‑1 (MQ=255)
cgcgTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGtgc > 1:2077508/1‑100 (MQ=255)
cgTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGtgctg < 2:884330/100‑1 (MQ=255)
gTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGtgctgc > 2:1723323/1‑100 (MQ=255)
ttCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGcc < 1:1592424/100‑1 (MQ=255)
tCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCg > 2:931126/1‑100 (MQ=255)
ccAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCgg > 1:2185232/1‑100 (MQ=255)
ccAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCgg < 1:578500/100‑1 (MQ=255)
agagCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTa < 2:70327/100‑1 (MQ=255)
gagCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTaa < 1:2938386/100‑1 (MQ=255)
gCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATg > 1:2491956/1‑100 (MQ=255)
gCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGCAATg > 1:1559138/1‑100 (MQ=255)
gCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATg > 1:2600017/1‑100 (MQ=255)
gCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATg > 1:2056371/1‑100 (MQ=255)
cGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATgcg < 2:851041/100‑1 (MQ=255)
ggATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATgcgc > 1:87737/1‑100 (MQ=255)
ggATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATgcgc > 2:1539254/1‑100 (MQ=255)
ggATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATgcgc > 1:774204/1‑100 (MQ=255)
gATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGcgcg > 1:793911/1‑100 (MQ=255)
aTCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCgg > 2:1058793/1‑100 (MQ=255)
aTCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGCAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGcgcg > 1:2009771/1‑99 (MQ=255)
cAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGAtt > 2:1778338/1‑100 (MQ=255)
aGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTc < 2:1363665/100‑1 (MQ=255)
gTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTcgcg < 2:666272/100‑1 (MQ=255)
gTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTcgcg < 1:1011994/100‑1 (MQ=255)
gTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTcgcg < 2:3424204/100‑1 (MQ=255)
gTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTcgcg < 2:3002862/100‑1 (MQ=255)
ttGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGt > 2:138162/1‑100 (MQ=255)
tGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTc > 2:1193140/1‑100 (MQ=255)
tGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTc > 2:53355/1‑100 (MQ=255)
gCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGc > 2:1523922/1‑100 (MQ=255)
gCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCAAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGc < 1:2978807/100‑1 (MQ=255)
ccTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCg > 2:104069/1‑100 (MQ=255)
ccTGATACACCTGTTCCATTAAAGGTAACGTGACATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCg > 1:92782/1‑100 (MQ=255)
cTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGa < 1:1084184/100‑1 (MQ=255)
cTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGa < 1:2526417/100‑1 (MQ=255)
tGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGat > 2:2923079/1‑100 (MQ=255)
tGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGat > 1:3016452/1‑100 (MQ=255)
gATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGata > 2:3247977/1‑100 (MQ=255)
tACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATAtt > 2:2441517/1‑100 (MQ=255)
tACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATAtt > 2:3023975/1‑100 (MQ=255)
acCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGcc < 1:2579828/100‑1 (MQ=255)
acCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGcc > 2:762813/1‑100 (MQ=255)
ccTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGccc > 2:2825623/1‑100 (MQ=255)
ccTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGccc < 1:2171544/100‑1 (MQ=255)
ccTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGc < 2:1216547/98‑1 (MQ=255)
cTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCa < 2:2124044/100‑1 (MQ=255)
tGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCaa < 1:3226102/100‑1 (MQ=255)
aTTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAgg > 2:1065375/1‑100 (MQ=255)
aTTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAgg > 2:2078631/1‑100 (MQ=255)
aTTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAgg > 2:865058/1‑100 (MQ=255)
aTTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAgg > 1:1909235/1‑100 (MQ=255)
aTTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAgg > 1:2678282/1‑100 (MQ=255)
aTTAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACC‑GGGGGTGGCGGTAAAGCGGGGGTTCGCCGCTGGGGATATTGCCCAAAccaag > 2:383304/1‑95 (MQ=255)
ttAAAGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGc > 1:56517/1‑100 (MQ=255)
ttAAAGGTAACGTGGCATCCTGCCAGCCTGCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGc < 1:2088350/100‑1 (MQ=255)
tAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCa < 2:3337163/100‑1 (MQ=255)
aaaGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAg < 1:1702427/100‑1 (MQ=255)
aGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTc < 1:2630708/100‑1 (MQ=255)
aGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTc < 1:3198910/100‑1 (MQ=255)
aGGTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTc < 2:2585130/100‑1 (MQ=255)
ggTAACGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCa < 1:1305664/100‑1 (MQ=255)
tAACGTGGCATCGTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAAc < 1:3265327/100‑1 (MQ=255)
aaCGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTCGCGATATTGCCCAAACAAGGCAGTCAACt < 1:492148/100‑1 (MQ=255)
aCGTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTg < 2:2258944/100‑1 (MQ=255)
cGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGc < 1:3314009/100‑1 (MQ=255)
gTGGCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGcn < 1:1023934/100‑2 (MQ=255)
ggCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGAc > 1:682215/1‑100 (MQ=255)
ggCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGAc < 2:3134986/100‑1 (MQ=255)
ggCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGAc < 1:1939882/100‑1 (MQ=255)
ggCATCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGAc > 1:1056081/1‑100 (MQ=255)
gCAGCCTGCCAGCCGTCGACAATCGCCACACCGGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGAGATTGCCCAAACAAGGCAGTCAACTGCGAc > 1:2065926/1‑99 (MQ=255)
tCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTgag < 2:1461436/100‑1 (MQ=255)
tCCTGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTgag < 2:1271702/100‑1 (MQ=255)
tGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGagaaa > 1:1369040/1‑100 (MQ=255)
tGCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGagaaa < 2:598940/100‑1 (MQ=255)
gCCAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGagaaag < 2:3104517/100‑1 (MQ=255)
cAGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGagaaagaa > 2:3290281/1‑100 (MQ=255)
aGCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAAt < 1:3395250/100‑1 (MQ=255)
gCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATa > 2:2819937/1‑100 (MQ=255)
gCCTTCGACAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATa < 1:2039086/100‑1 (MQ=255)
ccTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATAg < 2:1985059/100‑1 (MQ=255)
cTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATAGc < 1:747727/100‑1 (MQ=255)
tCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATAGCTg < 2:3178042/100‑1 (MQ=255)
gCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATAGCTGCCa < 2:2185249/100‑1 (MQ=255)
|
AGCGCCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTCGGCAATCGCCACACCAGGTGCTGCCGGTAATGCGCGGATTCGCGTCTGGCGATATTGCCCAAACAAGGCAGTCAACTGCGACTGAGAAAGAATAGCTGCCA > NC_000913/2967788‑2967986
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
