Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F258 I0 R1 432 103.0 5191697 92.7% 4812703 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,156,591 T→G 20.3% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,156,5910TG20.3% 230.9 / 64.9 117intergenic (+73/‑32)yqhD/dkgAaldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
Reads supporting (aligned to +/- strand):  ref base T (44/49);  new base G (10/14);  total (54/63)
Fisher's exact test for biased strand distribution p-value = 6.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.58e-01

Only 100 of 121 total aligned reads displayed.

GCCGTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCTG  >  NC_000913/3156493‑3156690
                                                                                                  |                                                                                                   
gccgTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTg                                                                                                    >  2:2090298/1‑100 (MQ=255)
gccgTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTg                                                                                                    >  1:1092470/1‑100 (MQ=255)
  cgTATATACGAAGCCGCCCGCTAAGCTTGTTACGCATCAAACTTTCGTTATCGGGCATTTCGTCCAAACTTAAGTGCACAACACCTCACCGGAGCCTGCt                                                                                                  <  1:2338672/100‑1 (MQ=255)
   gTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTc                                                                                                 >  2:1596076/1‑100 (MQ=255)
       ataCGAAGCCGCCCGCTAAGCTTTTTACGTCTCAAACTTTCGTTTTCGGACCTTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGt                                                                                             <  1:1605794/100‑1 (MQ=255)
       ataCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGt                                                                                             <  2:1386444/100‑1 (MQ=255)
        taCGAGGCCGCCCGCTAAGCTTTTTACGCCTCAACCCTTCGTCTTCGGCCATTTCGACCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTg                                                                                            <  1:2550296/100‑1 (MQ=255)
        taCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTg                                                                                            >  1:398942/1‑100 (MQ=255)
        taCGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTg                                                                                            <  2:1730838/100‑1 (MQ=255)
          cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAg                                                                                          >  1:1767003/1‑100 (MQ=255)
          cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAg                                                                                          <  2:2143623/100‑1 (MQ=255)
          cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAg                                                                                          <  2:413777/100‑1 (MQ=255)
          cGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAg                                                                                          <  1:2015943/100‑1 (MQ=255)
           gAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGt                                                                                         <  2:284151/100‑1 (MQ=255)
           gAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAgg                                                                                         <  2:1899360/100‑2 (MQ=255)
           gAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAgg                                                                                         <  1:336711/100‑2 (MQ=255)
           gAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTGCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCAGGCTCCGGTGAgg                                                                                         <  1:2169500/100‑2 (MQ=255)
              gccgccTGCTAAGCTTTTTACGCCTTAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGt                                                                                             <  1:2452296/93‑1 (MQ=255)
              gccgccCGCTAAGC‑TTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCat                                                                                     >  2:1001749/1‑100 (MQ=255)
               ccgcccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCat                                                                                     <  2:48093/100‑1 (MQ=255)
               ccgcccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCat                                                                                     >  2:1731473/1‑100 (MQ=255)
               ccgcccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCat                                                                                     >  1:2128227/1‑100 (MQ=255)
                cgcccgcTAAGCTTTTTACGCCTCAACCTTTCGTTTTCGGGCACTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCata                                                                                    <  1:1573634/100‑1 (MQ=255)
                 gcccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCatat                                                                                   <  2:2338080/100‑1 (MQ=255)
                  cccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCAtata                                                                                  <  1:548078/100‑1 (MQ=255)
                  cccgcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACAACTCACCGGAGCAGGCTCCGGTGAggtgttgtg                                                                                  <  1:1926478/100‑9 (MQ=37)
                     gcTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAag                                                                               >  2:900083/1‑100 (MQ=255)
                      cTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAagg                                                                              <  2:2091904/100‑1 (MQ=255)
                        aaGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAaggag                                                                            <  2:215076/100‑1 (MQ=255)
                         aGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAaggagg                                                                           >  1:935727/1‑100 (MQ=255)
                         aGCTTTTCACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAaggagg                                                                           >  1:1732568/1‑100 (MQ=255)
                          gCTTTTTACGCCTGAAACTTGCGATTTCGGGCATTTCGTCCAGACTTAAGTTCACAGCACCTCACCGGAGCCTTCGCCGGTGAGTTCATATAAagga                                                                             >  1:1576347/1‑97 (MQ=255)
                          gCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAggagga                                                                          <  2:430277/100‑1 (MQ=255)
                            ttgttACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAAc                                                                        <  1:2204071/97‑1 (MQ=255)
                             ttttACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACg                                                                       <  1:869204/100‑1 (MQ=255)
                             ttttACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACg                                                                       <  1:1731464/100‑1 (MQ=255)
                              tttACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGt                                                                      >  1:1313059/1‑100 (MQ=255)
                                tACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTAt                                                                    >  2:99417/1‑100 (MQ=255)
                                 aCGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATg                                                                   <  2:309165/100‑1 (MQ=255)
                                 aCGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATg                                                                   <  1:785977/100‑1 (MQ=255)
                                  cGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATgg                                                                  >  1:1350666/1‑100 (MQ=255)
                                   gCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGc                                                                 >  2:1767160/1‑100 (MQ=255)
                                    ccTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCt                                                                >  1:2399374/1‑100 (MQ=255)
                                    ccTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCt                                                                >  1:2019960/1‑100 (MQ=255)
                                    ccTCAAACTTTCGTTTTCGGGCATTTCGCCCAGACTTAAGTTCACAACACCTCACCGGAGGCTGCTCCGGTGAGTTCATATACAGTAGGAACGTATGGc                                                                 <  1:1598902/99‑1 (MQ=255)
                                        aaaCTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATc                                                            >  1:510087/1‑100 (MQ=255)
                                        aaaCTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATc                                                            >  2:1251047/1‑100 (MQ=255)
                                         aaCTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATcc                                                           <  2:432395/100‑1 (MQ=255)
                                            tttCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACATCACCTCACCGGAGCCTGCTTCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAAc                                                        <  1:1413381/100‑1 (MQ=255)
                                            tttCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAAc                                                        <  2:2502563/100‑1 (MQ=255)
                                             ttCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAAcc                                                       <  2:1191610/100‑1 (MQ=255)
                                             ttCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAAcc                                                       <  2:541513/100‑1 (MQ=255)
                                                gTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGtt                                                    >  1:2436851/1‑100 (MQ=255)
                                                 ttttCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGtta                                                   >  2:267284/1‑100 (MQ=255)
                                                     cGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTaa                                               >  2:660956/1‑100 (MQ=255)
                                                      gggCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAg                                              <  2:935730/100‑1 (MQ=255)
                                                      gagCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGACTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAg                                              >  2:1747977/3‑100 (MQ=255)
                                                       ggCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGc                                             <  2:2121120/100‑1 (MQ=255)
                                                       ggCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATAGAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAg                                              >  2:414645/1‑99 (MQ=255)
                                                           tttCGTCCAGACTTAAGTTCACAACCCCTCACCGAAGCCTGCTCCGGTGAGTCCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTAc                                          <  1:1055200/99‑1 (MQ=255)
                                                           tttCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACa                                         <  2:1092474/100‑1 (MQ=255)
                                                               gTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGAt                                     >  2:545998/1‑100 (MQ=255)
                                                               gTCCAGACATAAGAACACAACACCTCACAGGAGCCTGCTCCGGTGAGTCCACAAAAAGGAGGAACGTATGGCCAATCCAACAGTTATTAAGCTACAGGAt                                     >  1:1398707/1‑100 (MQ=255)
                                                                 ccAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATgg                                   <  1:1949664/100‑1 (MQ=255)
                                                                  cAGACTTAGGTTCACAGCACCTCACCGGAGCCTGCTCCGGTGAGTTCATATTAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGc                                  <  1:816051/100‑1 (MQ=255)
                                                                   agtattAAGTTCACAACACCTCAGCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGc                                  <  1:2140262/95‑1 (MQ=255)
                                                                    gACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCaa                                <  2:22941/100‑1 (MQ=255)
                                                                          aGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCAt                          >  2:1045931/1‑100 (MQ=255)
                                                                           gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATg                         >  2:468412/1‑100 (MQ=255)
                                                                           gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATg                         <  2:1217605/100‑1 (MQ=255)
                                                                           gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATg                         <  1:662910/100‑1 (MQ=255)
                                                                           gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGACAATGTCATg                         >  2:1948739/1‑100 (MQ=255)
                                                                           gTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAAGCCAACCGTTATTAAGCTACAGGATGGCAATGTCATg                         <  2:2371771/100‑1 (MQ=255)
                                                                            ttCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGc                        >  2:1524079/1‑100 (MQ=255)
                                                                             tCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGcc                       <  2:70579/100‑1 (MQ=255)
                                                                             tCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGcc                       <  2:2054391/100‑1 (MQ=255)
                                                                              cacaACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCCAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGccc                      >  1:1588281/1‑100 (MQ=255)
                                                                               acaacaCCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGCGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGcccc                     <  1:1657727/100‑1 (MQ=255)
                                                                                    aacTCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTg                >  2:180102/3‑100 (MQ=255)
                                                                                     ccTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTgg               <  2:2112105/100‑1 (MQ=255)
                                                                                     ccTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTg                >  1:209978/1‑99 (MQ=255)
                                                                                     acTCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTgg               >  1:558026/2‑100 (MQ=255)
                                                                                      cTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTggg              <  2:1002321/100‑1 (MQ=255)
                                                                                      cTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTg                <  1:1051709/98‑1 (MQ=255)
                                                                                      cTCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTggg              >  1:1110112/1‑100 (MQ=255)
                                                                                      cTCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTggg              >  2:2477330/1‑100 (MQ=255)
                                                                                      cTCACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTggg              >  1:2374559/1‑100 (MQ=255)
                                                                                      atctccGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTggg              <  2:865972/96‑1 (MQ=255)
                                                                                       tCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGAAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGa             >  1:1375642/1‑100 (MQ=255)
                                                                                        cACCGGAGCAGGCTCCGGTGAGTTCATATAAATGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGAc            >  2:2458587/1‑100 (MQ=255)
                                                                                        cACCGGAGCAGGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGAc            >  1:2371281/1‑100 (MQ=255)
                                                                                        cACCGGAGCAGGCTCCAGTAAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCTTTATTGAGCTACAGGATGGCAATGTCATGCCCCAGCTGCGa             >  1:1645647/1‑99 (MQ=255)
                                                                                          ccGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGagat          >  1:865969/1‑97 (MQ=255)
                                                                                          ccGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTg          <  2:1597778/100‑1 (MQ=255)
                                                                                           cGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTgg         <  2:1554263/100‑1 (MQ=255)
                                                                                              aGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCg      <  1:1145617/100‑1 (MQ=255)
                                                                                               gCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGt     >  2:289123/1‑100 (MQ=255)
                                                                                                 cTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCt   >  2:1331091/1‑100 (MQ=255)
                                                                                                  tGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCTg  >  1:2310551/1‑100 (MQ=255)
                                                                                                  tGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCTg  >  2:1079980/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GCCGTATATACGAAGCCGCCCGCTAAGCTTTTTACGCCTCAAACTTTCGTTTTCGGGCATTTCGTCCAGACTTAAGTTCACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTATGGCTAATCCAACCGTTATTAAGCTACAGGATGGCAATGTCATGCCCCAGCTGGGACTGGGCGTCTG  >  NC_000913/3156493‑3156690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A