Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F200 I1 R1
|
100 |
75.0 |
3643689 |
96.7% |
3523447 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,580,930 |
(A)9→8 |
intergenic (‑125/‑208) |
yhhX ← / → yhhY |
putative oxidoreductase/aminoacyl nucleotide detoxifying acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,580,922 | 0 | A | . | 98.2%
| 255.2
/ ‑1.9
| 57 | intergenic (‑117/‑216) | yhhX/yhhY | putative oxidoreductase/aminoacyl nucleotide detoxifying acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (33/23); total (33/24) |
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
GTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCG > NC_000913/3580824‑3581015
|
gtggtTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTACCGTGGATAAATTGAGAACGAAAGATCaa > 1:1093655/1‑100 (MQ=255)
ggtTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaa > 2:850908/1‑100 (MQ=255)
gtTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaa < 2:458655/100‑1 (MQ=255)
aTTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaa > 1:1529244/1‑100 (MQ=255)
tttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaag > 1:1201471/1‑99 (MQ=255)
ttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGGGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagc < 2:541738/100‑3 (MQ=255)
ttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagc > 1:1137996/1‑98 (MQ=255)
acacCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagcca > 1:619288/1‑96 (MQ=255)
cacCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAg > 1:117781/1‑100 (MQ=255)
tAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCAccc > 1:391244/1‑100 (MQ=255)
aGCGCAAAGCGGACGTGGGTCCTACTGTCGTGCGCATAACGAACACAAGCACTCCTGTGGATAAATTGAGATCGAAAGATC‑AAAAAAAAGCCAGCACCCg > 1:332833/1‑100 (MQ=255)
gcgcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCgg > 1:1608045/1‑100 (MQ=255)
cgcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggc < 2:843772/100‑1 (MQ=255)
gcAAAGCGGGCGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggct > 1:811223/1‑100 (MQ=255)
gcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggct > 1:1523238/1‑100 (MQ=255)
aaaGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggctg < 1:1559709/99‑1 (MQ=255)
ggACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAg < 2:587293/100‑1 (MQ=255)
aCGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTa < 1:915012/100‑1 (MQ=255)
cGTGGTTCCTACTGTAGTGCGCATAACGAACACAAGCCCTCCCCTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCTGCTGGCTAAGTaa < 1:1303426/100‑1 (MQ=255)
gTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAAt < 2:1051081/100‑1 (MQ=255)
ggTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATAc < 2:1117123/100‑1 (MQ=255)
gTTCCTATTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATAc < 2:1694507/99‑1 (MQ=255)
ttCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTg > 2:1293000/1‑100 (MQ=255)
tCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAACAAAAGCCAGCACCCGGCTGGCTAAGTAATACTgg > 1:957227/1‑100 (MQ=255)
tCCTACTGGAGTGAGCATAACGAACACAAGCATTCCCGTGAATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTgg < 1:1531951/100‑1 (MQ=255)
cTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGTCTGGCTAAGTAATACTGGaa < 1:876551/100‑1 (MQ=255)
tACTGGAGTGCTCATAACGAACACAAGCACTTCCGTGGATATATTGAGGACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAg < 2:1385102/100‑1 (MQ=255)
aCTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGaa > 2:874116/1‑98 (MQ=255)
tGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCaa < 2:1031393/100‑1 (MQ=255)
tGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGa > 2:194031/1‑100 (MQ=255)
gcgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAg > 1:1781080/1‑100 (MQ=255)
cgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGc < 1:1342945/100‑1 (MQ=255)
aTAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑‑AAAAAAATCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATg > 1:1543320/1‑100 (MQ=255)
aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGt > 1:574161/1‑99 (MQ=255)
aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTc > 2:848894/1‑100 (MQ=255)
cGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCg > 2:794375/1‑100 (MQ=255)
gAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGt > 2:1362600/1‑100 (MQ=255)
aaCACAAGCCCACCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATTCTGGAAGCTATGTGAGCAATGTCGt < 1:1705325/99‑1 (MQ=255)
aaCACAAGCATTCCCGTGGATAAATAGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTg > 1:367140/1‑100 (MQ=255)
aaCACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGt > 1:672179/1‑99 (MQ=255)
caAGCACTCCCGTGGATAAATTGAGAACGACAGGTC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAAAGTCGTGCttt > 1:1192322/1‑100 (MQ=255)
caAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCttt > 2:896933/1‑100 (MQ=255)
caAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCttt > 1:1673446/1‑100 (MQ=255)
aaGCACTGCCGTGGATAAATTGAGAAAGAAAGA‑AAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTc < 1:136257/100‑1 (MQ=255)
aCTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGt < 2:391246/100‑1 (MQ=255)
cTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGtt > 2:1451530/1‑100 (MQ=255)
cccGTGGATAAATTGAGAATGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtct < 2:619292/100‑1 (MQ=255)
cccGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtct > 2:340702/1‑100 (MQ=255)
gATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAACAATGTGAGCAATGTCGTGCTGTCAGGTTCTCCGCGa > 2:336349/1‑100 (MQ=255)
aaaTTGATAACAAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAg < 2:765896/98‑1 (MQ=255)
aaaTTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAggg < 2:581749/100‑1 (MQ=255)
aaaTTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAggg < 2:1317713/100‑1 (MQ=255)
aaTTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGt > 2:642824/1‑100 (MQ=255)
tGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATATCATGCTTTCAGGTTCTCCGCAAGGGt > 2:1000340/1‑97 (MQ=255)
tGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTAAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCtt > 2:1000408/1‑100 (MQ=255)
agaACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc < 2:1302715/100‑1 (MQ=255)
agaACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc > 2:599513/1‑100 (MQ=255)
gaACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCt > 2:1332789/1‑100 (MQ=255)
aaCGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTg < 2:1476547/100‑1 (MQ=255)
aaCGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTg < 2:640959/100‑1 (MQ=255)
aaCGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTAcc > 2:410763/1‑98 (MQ=255)
cGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGAt > 1:1465910/1‑100 (MQ=255)
cGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGAt > 2:1770050/1‑100 (MQ=255)
aaaGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATcg < 2:1529255/100‑1 (MQ=255)
aaaGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATcg > 1:86942/1‑100 (MQ=255)
|
GTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCG > NC_000913/3580824‑3581015
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
