Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F255 I0 R1	121	91.8	4500463	95.1%	4279940	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,906,015	G→A	41.3%	Q185* (CAA→TAA)	bglG ←	transcriptional antiterminator of the bgl operon

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,906,015	0	G	A	41.3%	56.9 / 101.0	92	Q185* (CAA→TAA)	bglG	transcriptional antiterminator of the bgl operon
Reads supporting (aligned to +/- strand): ref base G (36/18); new base A (22/16); total (58/34)
Fisher's exact test for biased strand distribution p-value = 5.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01

GAATACGCCAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTT  >  NC_000913/3905919‑3906110

gAATACGCCAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTacag                                                                                              >  2:1876447/1‑100 (MQ=255)

     cGCCAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCAttt                                                                                         >  2:1399527/1‑100 (MQ=255)

     cGCCAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCAttt                                                                                         >  1:1215132/1‑100 (MQ=255)

     cGCCAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCAttt                                                                                         >  1:1493095/1‑100 (MQ=255)

     cGCCAGGATAAAAACTTCACATGTGTAACCAGTCGCTGATAACTAAAGCTTTCTTCCTGGTCATTAAGGCTGAACTGAAATTTTATTAATTgcaaca                                                                                            >  2:92918/1‑97 (MQ=255)

       ccAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTcg                                                                                       >  1:1091533/1‑100 (MQ=255)

       ccAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTcg                                                                                       >  2:2019782/1‑100 (MQ=255)

         aGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTcgcg                                                                                     <  2:187229/100‑1 (MQ=255)

         aGGATAAAAACTTCAGATGTGTAACAAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTcgcg                                                                                     >  2:788102/1‑100 (MQ=255)

          ggATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTagcg                                                                                     >  1:107458/1‑99 (MQ=255)

          ggATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCgcgc                                                                                    <  1:494151/100‑1 (MQ=255)

          ggATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCgcgc                                                                                    >  1:2206573/1‑100 (MQ=255)

           gATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCgcgc                                                                                    <  2:673030/99‑1 (MQ=255)

             tAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCAtt                                                                                 >  2:471934/1‑100 (MQ=255)

             tAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCAtt                                                                                 >  1:370903/1‑100 (MQ=255)

             tAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCAtt                                                                                 >  2:1941704/1‑100 (MQ=255)

             tAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCAtt                                                                                 >  2:719191/1‑100 (MQ=255)

              aaaaaCTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTa                                                                                >  2:678977/1‑100 (MQ=255)

              aaaaaCTGCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTa                                                                                >  1:1997872/1‑100 (MQ=255)

               aaaaCTTCAGATGTGTAAACAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTaa                                                                               >  2:1505792/1‑100 (MQ=255)

                   cTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTg                                                                            >  2:886603/1‑99 (MQ=255)

                   cTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGc                                                                           >  1:1727396/1‑100 (MQ=255)

                    ttCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCg                                                                          <  2:1061767/100‑1 (MQ=255)

                      cAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTg                                                                        >  2:336947/1‑100 (MQ=255)

                      cAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTg                                                                        >  2:921654/1‑100 (MQ=255)

                      cAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTg                                                                        <  1:1388780/100‑1 (MQ=255)

                      cAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTg                                                                        <  1:1443734/100‑1 (MQ=255)

                      cAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTg                                                                        >  1:546139/1‑100 (MQ=255)

                         aTGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGac                                                                      <  1:582506/99‑1 (MQ=255)

                          tgtgTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGacac                                                                    <  1:691267/100‑1 (MQ=255)

                           gtgtAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACAcc                                                                   <  1:2085401/100‑1 (MQ=255)

                           gtgtAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACAcc                                                                   >  2:329598/1‑100 (MQ=255)

                            tgtAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCt                                                                  >  1:669841/1‑100 (MQ=255)

                             gtAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCt                                                                  >  1:280264/1‑99 (MQ=255)

                             gtAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTg                                                                 >  1:678972/1‑100 (MQ=255)

                             gtAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTg                                                                 >  1:2073475/1‑100 (MQ=255)

                              tAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGc                                                                <  1:782872/100‑1 (MQ=255)

                              tAACCAGTCGCTGATAACTCAAGAATTCTTCCTGGTAATTAAGGCTGAACTAAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGc                                                                >  2:252949/1‑100 (MQ=255)

                               aaCCAGTCGCTGATAACTCAAGTTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCa                                                               <  1:1872955/100‑1 (MQ=255)

                               aaCCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCa                                                               <  1:1064458/100‑1 (MQ=255)

                                aCCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAACATTTCGCGCATTAACTGCGTGACACCTGCaa                                                              >  1:1204339/1‑100 (MQ=255)

                                   aGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGc                                                                <  1:2102674/95‑1 (MQ=255)

                                        cTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACAtcctcc                                                      <  1:556224/100‑1 (MQ=255)

                                        cTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACAtcctcc                                                      >  2:806414/1‑100 (MQ=255)

                                          gATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCat                                                    >  1:1387861/1‑100 (MQ=255)

                                           aTAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCata                                                   <  1:1825301/100‑1 (MQ=255)

                                              aCTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATAttt                                                >  2:632872/1‑100 (MQ=255)

                                              aCTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATAttt                                                >  1:1856022/1‑100 (MQ=255)

                                               cTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATAttt                                                >  2:1650455/1‑99 (MQ=255)

                                               cTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTc                                               >  2:1017556/1‑100 (MQ=255)

                                               cTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTc                                               >  1:1190706/1‑100 (MQ=255)

                                               cTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTc                                               <  2:1147556/100‑1 (MQ=255)

                                               cTCAAGCTTTCTTCCTGGTAATTAAGGCCGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTc                                               >  2:462141/1‑100 (MQ=255)

                                                tCAAGTTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTcc                                              <  1:1923510/100‑1 (MQ=255)

                                                 cAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCg                                             >  2:928362/1‑100 (MQ=255)

                                                 cAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCg                                             <  1:882177/100‑1 (MQ=255)

                                                  aaGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCg                                             >  1:1396920/1‑99 (MQ=255)

                                                  aaGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGc                                            <  2:398662/100‑1 (MQ=255)

                                                   aGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGTAACATCCAGCATAGTTCCGCt                                           <  2:892135/100‑1 (MQ=255)

                                                   aGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCt                                           >  1:2020219/1‑100 (MQ=255)

                                                        tcttcCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCAttt                                      <  1:2153041/100‑1 (MQ=255)

                                                        tcttcCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCAttt                                      >  2:1768704/1‑100 (MQ=255)

                                                         cttcCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTg                                     <  1:1878160/100‑1 (MQ=255)

                                                            ccTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCTCGCATTAACTGCGTGACACCTGCAACATTCTCCATATTTCCGCTCATTTGGGc                                  <  2:1050956/100‑1 (MQ=255)

                                                            ccTGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGc                                  <  1:833208/100‑1 (MQ=255)

                                                             cTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCa                                 >  2:745529/1‑100 (MQ=255)

                                                              tGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCAc                                >  2:1940125/1‑100 (MQ=255)

                                                              tGGTAATTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCAc                                >  1:2054909/1‑100 (MQ=255)

                                                               ggTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACt                               >  1:1915741/1‑100 (MQ=255)

                                                                  aaTTAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCAGTAACTGCGTGGCACCTGCCACATCCTCCATATTTCCGCTCATTTCGGCACtta                             >  2:1093604/1‑97 (MQ=255)

                                                                   aTTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGAcc                           <  2:1043551/100‑1 (MQ=255)

                                                                     tAAGGCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAg                         >  1:426391/1‑100 (MQ=255)

                                                                      aaGGCTGAACTGAAATTATATTAAGTACAGCATTTAGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGa                        >  2:912349/1‑100 (MQ=255)

                                                                        ggCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATg                      >  1:1022546/1‑100 (MQ=255)

                                                                        ggCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATg                      <  1:2169988/100‑1 (MQ=255)

                                                                        ggCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACAACCTCCATATTTCCGCTCATTTGGGCACTGACCAGATg                      <  2:1190644/100‑1 (MQ=255)

                                                                        ggCTGAACTGAAATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATg                      <  2:227184/100‑1 (MQ=255)

                                                                         gCTGAACTTATATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGc                     <  1:788102/100‑1 (MQ=255)

                                                                          ctgaactgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAATATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCa                    <  2:1220268/100‑1 (MQ=255)

                                                                          ctgaactgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCa                    >  1:432018/1‑100 (MQ=255)

                                                                          ctgaactgaaATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCa                    >  2:1254543/1‑100 (MQ=255)

                                                                             aactgaaATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATgg                 <  2:469642/100‑1 (MQ=255)

                                                                              actgaaATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGc                <  1:1556821/100‑1 (MQ=255)

                                                                               ctgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCa               >  2:807344/1‑100 (MQ=255)

                                                                                tgaaATTTTATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCaa              >  1:1650048/1‑100 (MQ=255)

                                                                                  aaaTTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATa            >  1:1389799/1‑100 (MQ=255)

                                                                                    aTTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATaaa          >  1:1719717/1‑100 (MQ=255)

                                                                                      tttATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGc        <  1:1240249/100‑1 (MQ=255)

                                                                                      tttATTAATTACAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGc        <  1:1425863/100‑1 (MQ=255)

                                                                                         attaATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCa     >  1:135624/1‑100 (MQ=255)

                                                                                         attaATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGCCACTGACCAGATGCAAGGCAAAAAAGCCCa     >  1:1832985/1‑100 (MQ=255)

                                                                                           taATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACt   >  2:74502/1‑100 (MQ=255)

                                                                                           taATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACt   >  1:547104/1‑100 (MQ=255)

                                                                                            aaTTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACtt  >  1:684775/1‑100 (MQ=255)

GAATACGCCAGGATAAAAACTTCAGATGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTT  >  NC_000913/3905919‑3906110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A