Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F255 I0 R1
|
121 |
91.8 |
4500463 |
95.1% |
4279940 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC |
NC_000913 |
4,370,608 |
Δ4 bp |
38.8% |
intergenic (‑196/‑77) |
yjeH ← / → groS |
putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4370607 | 54 (0.660) | 34 (0.420) |
30/176 |
NT |
38.8% |
intergenic (‑195/‑81) |
yjeH/groS |
putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
| ? | NC_000913 |
4370612 = |
54 (0.670) | intergenic (‑200/‑76) |
yjeH/groS |
putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
CGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4370508‑4370607
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGA > NC_000913/4370612‑4370710
CGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTT < 2:1587250/100‑1
AATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCAC < 2:821579/100‑1
ATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACC < 2:878975/100‑1
GGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGG > 2:1307543/1‑100
GGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGG > 1:1549403/1‑100
TGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCGTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGG < 1:1768952/99‑1
ATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAAC < 2:194226/100‑1
AGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCAC > 2:338802/1‑100
GTTTTCTCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTA < 2:1218128/100‑1
GTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTA < 2:1684998/100‑1
ACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGC > 1:2231396/1‑97
CCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCG > 1:1415267/1‑100
CCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGG < 1:1605138/100‑1
CGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGC < 2:1689963/100‑1
GATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCG < 1:2072886/100‑1
TTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAC > 2:1898305/1‑100
TGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAC < 2:2224295/99‑1
CAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGA < 1:338801/100‑1
AGAAGTTTTTGTATTGTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATGTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAGCA < 1:486136/97‑1
ATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACG > 1:2189170/1‑100
TTCTTTTTCTCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTC < 1:103051/100‑1
TTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTC < 1:453028/100‑1
TTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTC > 1:211252/1‑100
TTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCA < 1:2027822/100‑1
TTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAG < 1:8911/100‑1
TCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGG > 2:1244835/1‑100
CCCCCTTGAAGGGGCGAAGCCTCCTCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGGCACCCATAACACATACGGACTTACTCAAAGGA < 2:2231078/100‑1
CCCTTGAAGGGGCGAAGCATCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGTCATAACCCATAACAGAAACGGACTTCGTCAAAGGAG > 2:447790/1‑99
GCGAAGCCTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGA < 1:1653019/100‑1
CTCATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCAATAACAGATACACACTTTCTCAAAGTAGAGTTATCAATAAATAT > 1:852079/1‑97
CATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTC < 2:211252/100‑1
CATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTC > 1:2128082/1‑100
CATCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTC < 1:1244840/100‑1
TCCCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCA < 2:1225759/100‑1
CCCATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATT > 2:513776/1‑100
CATTTGGTCACCAGCCGGGAAACCACGTAAGCTCTGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGC > 2:587330/1‑100
CATTTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGC < 1:578260/100‑1
TGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAATAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATG < 2:312909/99‑1
TGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGA > 1:41771/1‑100
CGATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4370508‑4370607
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGA > NC_000913/4370612‑4370710
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
