Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F169 I1 R1
|
59 |
169.8 |
8365175 |
96.8% |
8097489 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,333,582 |
(A)8→9 |
intergenic (‑131/‑128) |
rplU ← / → ispB |
50S ribosomal subunit protein L21/octaprenyl diphosphate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,333,574 | 1 | . | A | 95.3%
| 490.1
/ 15.5
| 149 | intergenic (‑123/‑136) | rplU/ispB | 50S ribosomal subunit protein L21/octaprenyl diphosphate synthase |
| Reads supporting (aligned to +/- strand): ref base . (2/5); new base A (84/58); total (86/63) |
| Fisher's exact test for biased strand distribution p-value = 1.34e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-01 |
Only 100 of 169 total aligned reads displayed.
CCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGCCTTTG > NC_000913/3333475‑3333668
|
ccTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACg‑aag > 1:712045/1‑100 (MQ=255)
ccTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACg‑aag > 1:1784000/1‑100 (MQ=255)
cTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACg‑aag‑‑a < 2:2636399/100‑1 (MQ=255)
cTTTTCAATGACTCATAGTGCGCCATAAATACTCACAACACGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCCATAC‑ACg‑aag‑‑a < 2:2495998/100‑1 (MQ=255)
cAATGATTCAGCGAGCGCTATAAATATTCACAATATGGCGCGAATATTATCCAAAACGAACACCTTTGACAAGTGCTACCGTCCGTAA‑ACG‑AAG‑‑aaaa > 2:1317660/1‑98 (MQ=255)
cAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑aaaaa‑‑‑a > 2:2736002/1‑100 (MQ=255)
aaTGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑aaaaa‑‑‑a‑a > 1:3007315/1‑100 (MQ=255)
aTGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑aaaaa‑‑‑a‑aa < 2:1756551/100‑1 (MQ=255)
aTGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑aaaaa‑‑‑a‑aa < 1:3436354/100‑1 (MQ=255)
gATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑Aaa‑‑aaaaa‑‑‑a‑aaac < 2:218710/100‑3 (MQ=255)
gATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑aaaaa‑‑‑a‑aaac < 1:1902208/100‑3 (MQ=255)
gATTCAGAGTGAGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGGGCTACAGTCAATAC‑ACG‑AAG‑‑aaaaa‑‑‑a‑aaac < 1:2280596/100‑3 (MQ=255)
ttCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTAAATAC‑ACG‑AAG‑‑aaaaa‑‑‑a‑aaacac < 1:1499260/100‑5 (MQ=255)
cAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACaa > 2:260895/1‑100 (MQ=255)
cAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACaa > 1:323226/1‑100 (MQ=255)
cAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACaa > 1:785228/1‑100 (MQ=255)
gagTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑AAAAA‑‑‑A‑AAaacacaac > 2:3152461/1‑96 (MQ=255)
gTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACt > 1:3431225/1‑98 (MQ=255)
gTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTg > 2:2401965/1‑100 (MQ=255)
gggcTATAAATATGTACAGTAGGGGGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTg < 2:1178077/96‑1 (MQ=255)
gcgcTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTa > 2:2745534/1‑100 (MQ=255)
gcgcTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTa > 1:1620754/1‑100 (MQ=255)
gcgcTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTa < 2:1783987/100‑1 (MQ=255)
gcTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACg > 2:3605952/1‑100 (MQ=255)
gcTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACg > 1:3218690/1‑100 (MQ=255)
ataAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTa > 1:3381589/1‑100 (MQ=255)
ataAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAA‑AAG‑AAAAAAAAAA‑‑‑A‑AACACAACTTGTACgg < 1:841347/99‑1 (MQ=255)
taAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTAACAAGTGCTACAGTCAATAC‑ACG‑AAAAAAAAAA‑‑‑A‑AACACAACTTGTACGGTa < 2:2839348/100‑1 (MQ=255)
aaaTATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGAAAAAAA‑‑‑A‑AACACAACTTGTACGGTaa > 2:2315835/1‑100 (MQ=255)
aaaTATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAAc > 2:1561799/1‑100 (MQ=255)
aaaTATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACCTGTACGGGaa > 2:1871695/1‑99 (MQ=255)
atatTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACACTCGATAC‑ACT‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGt > 2:2929773/1‑100 (MQ=255)
aaatgcacaAAAGGGCGCGAGTAGTACGCAAAACGCACGCCTTTGATGAGTGCTACAGTCAATAAAAAA‑AAA‑‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGt < 2:3562580/95‑1 (MQ=255)
tatTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGtt < 1:1149946/100‑1 (MQ=255)
ttCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTa > 2:2234495/1‑100 (MQ=255)
ttCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTa > 1:2214696/1‑100 (MQ=255)
tCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTa > 2:1045709/1‑99 (MQ=255)
cacaATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGTTAACGTTTAt > 1:1703547/1‑99 (MQ=255)
cacaATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATc > 1:409752/1‑100 (MQ=255)
acaATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATc < 2:897013/99‑1 (MQ=255)
caATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACTGAAACGTTTATc > 2:1236672/1‑98 (MQ=255)
aaTAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCtgt < 1:3645852/100‑1 (MQ=255)
aaTAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACCTTTATc > 1:2620455/1‑97 (MQ=255)
aaTAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑AAA‑AAAA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCtgt < 2:1620742/100‑1 (MQ=255)
gggCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCa > 1:2671611/1‑100 (MQ=255)
gggCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCa > 1:2619215/1‑100 (MQ=255)
ttccgatctatTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCAt < 2:4128848/92‑1 (MQ=255)
ggCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCAt > 1:3753653/1‑100 (MQ=255)
gcgcGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCAtt > 2:2699808/1‑100 (MQ=255)
cgcgAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCAtt > 2:2032792/1‑99 (MQ=255)
cgAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCAttttt < 1:411309/100‑1 (MQ=255)
aaTATTACGCAAAACGCACGCCTTTGACAAGGGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTc < 1:3845914/100‑1 (MQ=255)
aaTATTACGCAAAACGAACGCATTTGACAAGTGCTACAGTCAATAA‑AAAAAAA‑‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTc < 2:1492453/100‑1 (MQ=255)
aaTATTACGCAAAACGAACACCTTTGACAAGTGCTACAGTCAATAC‑ATG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTc < 2:215895/100‑1 (MQ=255)
atatTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCa < 1:1988958/100‑1 (MQ=255)
tatTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCACTAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAg < 1:1881760/100‑1 (MQ=255)
tatTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAg > 2:3232377/1‑100 (MQ=255)
tatTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAg < 2:4080432/100‑1 (MQ=255)
atTACGCAAAACGAACGCCTTTAACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCa < 2:3027672/98‑1 (MQ=255)
ttACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTa < 1:3152123/100‑1 (MQ=255)
cGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑AAAAAACTA‑AACACAACTTCTACGGTAACGTTTTTCTGCGCCATTTTTTCAg > 2:2383933/1‑97 (MQ=255)
aaCGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAcc < 2:50170/100‑1 (MQ=255)
acgcacgcCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAccc < 1:2906428/100‑1 (MQ=255)
cgcacgcCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCt > 2:2130538/1‑100 (MQ=255)
cacgcCTTTGAGAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGCGCCATTTTTTTAGTATACTCCCCatat > 2:1055071/1‑100 (MQ=255)
cacgcCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCtat > 1:1910617/1‑100 (MQ=255)
acgcCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCtata < 1:2107816/100‑1 (MQ=255)
cgcCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTatat < 1:1212448/100‑1 (MQ=255)
gcCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGATTATCTGTGCCATTTTTTCAGTACAATCACCCTATAtt > 2:312906/1‑100 (MQ=255)
ccTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGAAAAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATAtt < 1:333170/100‑1 (MQ=255)
ccTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTc > 1:632257/1‑100 (MQ=255)
cTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATTACCCTATATTcc > 1:2034143/1‑100 (MQ=255)
ttGACAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTa < 1:1416161/100‑1 (MQ=255)
aCAAGTGCTTCATTCAATAA‑AAAAAAA‑‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAAc < 2:3627789/99‑1 (MQ=255)
aCAAGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTcc < 2:3857050/95‑1 (MQ=255)
aaGTGCTACAGTCAATAC‑ACA‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCt < 2:3381550/94‑1 (MQ=255)
aGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATa < 1:132097/100‑1 (MQ=255)
aGTGCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATa < 2:127783/100‑1 (MQ=255)
gggCTACAGGCAAAAA‑AAG‑AAAA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAAc < 2:2656692/93‑1 (MQ=255)
gCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTTCCATTTTTTCAATACAATCACCCTATATTTCTAACCATAAAc > 1:1288957/1‑100 (MQ=255)
gCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAAc < 2:291148/100‑1 (MQ=255)
gCTACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTAGTACGGTAACGTTCATCTGTGCCATTTCTTCAGCACAAACACCCTATATTCCTAACCATaa > 1:2952822/1‑98 (MQ=255)
gCTACAGTCAATAC‑ACA‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAAc < 2:3824598/100‑1 (MQ=255)
tACAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAATACAATCACCTTATATTCCTAACCATaatctc > 2:80672/1‑96 (MQ=255)
aCAGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCt > 1:615780/1‑100 (MQ=255)
cggTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACATGTACGGTAAGGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTa > 1:2821268/3‑100 (MQ=255)
aGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTaa > 2:628404/1‑100 (MQ=255)
aGTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTATGCCATTTTATCAGTTCAATCACCCTATATTCCTAACCATAAACCCTa > 2:3696780/1‑99 (MQ=255)
gTCAATAC‑AGG‑AAG‑‑AAAAA‑‑‑ACAATACACCTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATCTTCCTAACCATAAACCCt < 2:3334003/97‑1 (MQ=255)
gTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAg < 1:2721075/100‑1 (MQ=255)
gTCAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAg > 1:911756/1‑100 (MQ=255)
cAATAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGtt > 2:3908646/1‑100 (MQ=255)
aaTAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTTTTTACAATAAACCTATATTCCTCATCATAAACTCTAAttt > 2:824742/1‑99 (MQ=255)
tAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGcc > 1:935967/1‑100 (MQ=255)
tAC‑ACG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGcc < 1:436006/100‑1 (MQ=255)
cG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCATTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGCCTTTg > 2:2225229/1‑100 (MQ=255)
cG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGCCtt > 1:3906187/1‑98 (MQ=255)
cG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGCCTTTg < 1:1058590/100‑1 (MQ=255)
cG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGCCTTTg < 1:1045714/100‑1 (MQ=255)
cG‑AAGA‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACACTATATTCCTAACCATAAACCCTAAggttccgt > 2:343101/1‑91 (MQ=255)
|
CCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATAC‑ACG‑AAG‑‑AAAAA‑‑‑A‑AACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCTAAGTTGCCTTTG > NC_000913/3333475‑3333668
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
