Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F169 I1 R1	59	169.8	8365175	96.8%	8097489	99.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,533,536	A→G	A83A (GCT→GCC)	yjhQ ←	GNAT family putative N‑acetyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,533,536	0	A	G	98.8%	626.6 / ‑3.1	175	A83A (GCT→GCC)	yjhQ	GNAT family putative N‑acetyltransferase
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (85/86); total (87/88)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01

Only 100 of 178 total aligned reads displayed.

CCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTAG  >  NC_000913/4533439‑4533631

ccGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGc                                                                                               <  1:2234741/100‑1 (MQ=255)

   tCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAg                                                                                            <  1:305566/100‑1 (MQ=255)

   tCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAg                                                                                            <  1:1456608/100‑1 (MQ=255)

     tGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGa                                                                                          <  2:2634835/100‑1 (MQ=255)

     tGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGa                                                                                          <  1:3800935/100‑1 (MQ=255)

      ggCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGAt                                                                                         >  1:3481358/1‑100 (MQ=255)

      ggCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGAt                                                                                         >  2:1287048/1‑100 (MQ=255)

          gCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGc                                                                                     <  2:1120111/100‑1 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCACCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCa                                                                                    <  1:3802525/100‑1 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCa                                                                                    <  2:424316/100‑1 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCa                                                                                    >  2:4045894/1‑100 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCa                                                                                    <  2:3160479/100‑1 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCa                                                                                    <  1:464643/100‑1 (MQ=255)

             cATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATc                                                                                  >  1:765022/1‑100 (MQ=255)

             cATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATc                                                                                  <  1:1167678/100‑1 (MQ=255)

              aTCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCa                                                                                 >  1:3850272/1‑100 (MQ=255)

               tCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCaa                                                                                >  2:2135095/1‑100 (MQ=255)

                cAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAAc                                                                               <  1:4045937/100‑1 (MQ=255)

                 aaCCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACg                                                                              >  1:4148247/1‑100 (MQ=255)

                 aaCCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACg                                                                              <  1:3303307/100‑1 (MQ=255)

                    cTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTg                                                                           <  1:527099/100‑1 (MQ=255)

                      cAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGaa                                                                         >  1:2672824/1‑100 (MQ=255)

                       aGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAAt                                                                        <  1:501140/100‑1 (MQ=255)

                        ggTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGTCCGCCTGGGGGGCGAGGATGTGCATCAACGGTGAATc                                                                       >  2:2809649/1‑100 (MQ=255)

                        ggTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATc                                                                       >  2:3562508/1‑100 (MQ=255)

                        ggTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATc                                                                       <  1:1132967/100‑1 (MQ=255)

                          tGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCa                                                                     >  2:2224621/1‑100 (MQ=255)

                           gCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCAt                                                                    <  2:1099991/100‑1 (MQ=255)

                            cTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCAtt                                                                   <  1:1118595/100‑1 (MQ=255)

                             tCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCAttt                                                                  >  1:781718/1‑100 (MQ=255)

                                aTGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTtctc                                                               >  1:3348167/1‑100 (MQ=255)

                                 tGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTcc                                                              <  1:513544/100‑1 (MQ=255)

                                 tGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTcc                                                              <  1:218250/100‑1 (MQ=255)

                                  gCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCt                                                             >  1:1615868/1‑100 (MQ=255)

                                  gCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCt                                                             >  1:3901412/1‑100 (MQ=255)

                                   ccAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCtt                                                            >  2:2378465/1‑100 (MQ=255)

                                      gTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGa                                                         <  1:2676033/100‑1 (MQ=255)

                                       tGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGaa                                                        <  2:411859/100‑1 (MQ=255)

                                        gCGTATCAACCGTCCTCCCACGCCGATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAg                                                       <  2:2073980/100‑1 (MQ=255)

                                        gCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAg                                                       >  1:1529691/1‑100 (MQ=255)

                                        gCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAg                                                       <  1:1018553/100‑1 (MQ=255)

                                         cGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAgg                                                      >  1:2045737/1‑100 (MQ=255)

                                         cGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAgg                                                      <  1:1968285/100‑1 (MQ=255)

                                          gTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGt                                                     >  1:849699/1‑100 (MQ=255)

                                          gTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGt                                                     <  1:593832/100‑1 (MQ=255)

                                           tATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTACTCCTTTGAAGGtt                                                    >  2:2844327/1‑100 (MQ=255)

                                             tCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGc                                                  >  1:820849/1‑100 (MQ=255)

                                             tCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGc                                                  <  2:63222/100‑1 (MQ=255)

                                             tCAACCGTCCTCCCACGCCCATCCCTTGGCATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGc                                                  <  2:1753964/100‑1 (MQ=255)

                                              cAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGcc                                                 >  2:783027/1‑100 (MQ=255)

                                              cAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGcc                                                 >  1:1316504/1‑100 (MQ=255)

                                               aaCCGCCCTCCCACGCCCATGCCTGGGTAGTCCGGGATGACCGCCAGGGGCGCTATGATGTGCATCATCGGTGAATCCATTTCTCCTTTGAAGGTTg                                                   <  2:3721956/97‑1 (MQ=255)

                                                aCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCg                                               <  2:3413304/100‑1 (MQ=255)

                                                 ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg                                              <  1:87781/100‑1 (MQ=255)

                                                 ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg                                              <  1:3090377/100‑1 (MQ=255)

                                                 ccGTCCTCCCACGCCCATCCCGTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg                                              <  2:3742484/100‑1 (MQ=255)

                                                  cGTCCTCCCATGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACCGTTAATCCATTTCTCCTTTGAAGGTTGCCCggg                                             <  2:2752060/100‑1 (MQ=255)

                                                  cGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCggg                                             <  1:3063371/100‑1 (MQ=255)

                                                   gTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGAGGGCGAGGATGTCCATCAACAGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg                                              >  2:745659/1‑98 (MQ=255)

                                                    tcctccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGta                                           <  1:709617/100‑1 (MQ=255)

                                                       tccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaagt                                        <  1:2833932/100‑3 (MQ=255)

                                                       tccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaat                                        >  1:280941/1‑100 (MQ=255)

                                                        cccACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaata                                       >  1:1941479/1‑100 (MQ=255)

                                                        cccACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaata                                       >  2:3530402/1‑100 (MQ=255)

                                                         ccACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaataa                                      >  2:2945958/1‑100 (MQ=255)

                                                          cACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaataaa                                     <  1:945144/100‑1 (MQ=255)

                                                            cGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaat                                   >  2:2018397/1‑100 (MQ=255)

                                                              cccATCCCTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAatat                                 >  2:897925/1‑100 (MQ=255)

                                                                    ccTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGa                           >  1:3621709/1‑100 (MQ=255)

                                                                     cTTGGTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGAc                          >  1:2077307/1‑100 (MQ=255)

                                                                        ggTATTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGc                       >  2:3051103/1‑100 (MQ=255)

                                                                        ggTATTCCGGTAGGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGc                       >  1:2754304/1‑100 (MQ=255)

                                                                           aTTCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCttt                    >  2:1034194/1‑100 (MQ=255)

                                                                            ttCCGGTATGACCGCCAGGGGGGCGAGGATGTTCATCAAGGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTg                   <  2:2930511/100‑1 (MQ=255)

                                                                            ttCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTg                   <  2:699594/100‑1 (MQ=255)

                                                                            ttCCGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTg                   <  1:3365770/100‑1 (MQ=255)

                                                                             ttcGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGc                  <  2:2539497/98‑1 (MQ=255)

                                                                              ccGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGcc                 >  1:615423/1‑100 (MQ=255)

                                                                              ccGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGcc                 <  2:2967453/100‑1 (MQ=255)

                                                                              ccGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGcc                 <  1:2417612/100‑1 (MQ=255)

                                                                               cGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCt                <  1:489599/100‑1 (MQ=255)

                                                                               cGGTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCt                >  1:2141826/1‑100 (MQ=255)

                                                                                ggTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCtt               <  1:1287059/100‑1 (MQ=255)

                                                                                ggTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCtt               >  2:3237390/1‑100 (MQ=255)

                                                                                ggTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCtt               <  1:3713475/100‑1 (MQ=255)

                                                                                ggTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCtt               >  1:920051/1‑100 (MQ=255)

                                                                                 gTATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTc              <  2:1881430/100‑1 (MQ=255)

                                                                                  tATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGACTCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCa             <  1:229363/100‑1 (MQ=255)

                                                                                  tATGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCa             <  2:3195333/100‑1 (MQ=255)

                                                                                   aTGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCAt            >  2:3434651/1‑100 (MQ=255)

                                                                                   aTGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCAt            >  1:1608458/1‑100 (MQ=255)

                                                                                    tGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCAt            >  1:2038933/1‑99 (MQ=255)

                                                                                    tGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATa           >  2:1531539/1‑100 (MQ=255)

                                                                                    tGACCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATa           >  2:1531139/1‑100 (MQ=255)

                                                                                      aCCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATAcc         >  1:1435887/1‑100 (MQ=255)

                                                                                      aCCGCCAGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATAcc         <  2:849695/100‑1 (MQ=255)

                                                                                            aGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTa   >  2:3866796/1‑100 (MQ=255)

                                                                                            aGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTa   <  1:2568713/100‑1 (MQ=255)

                                                                                             ggggggCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTag  <  1:4058425/100‑1 (MQ=255)

                                                                                             ggggggCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTag  >  2:1210639/1‑100 (MQ=255)

CCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCAGGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTAG  >  NC_000913/4533439‑4533631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A