Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F210 I0 R1	188	159.1	7866933	93.3%	7339848	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	4,533,536	A→G	100%	A83A (GCT→GCC)	yjhQ ←	GNAT family putative N‑acetyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,533,536	0	A	G	97.4%	471.8 / ‑0.3	148	A83A (GCT→GCC)	yjhQ	GNAT family putative N‑acetyltransferase
Reads supporting (aligned to +/- strand): ref base A (1/3); new base G (93/51); total (94/54)
Fisher's exact test for biased strand distribution p-value = 1.38e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.00e-01

Only 100 of 150 total aligned reads displayed.

CCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTAGC  >  NC_000913/4533439‑4533632

ccGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGc                                                                                                >  2:1826461/1‑100 (MQ=255)

  gTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGa                                                                                              >  2:2604568/1‑100 (MQ=255)

    cTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAgg                                                                                            >  1:707913/1‑100 (MQ=255)

     tGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGa                                                                                           >  1:2589066/1‑100 (MQ=255)

      ggCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGAt                                                                                          >  2:383613/1‑100 (MQ=255)

      ggCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGAt                                                                                          >  1:1788129/1‑100 (MQ=255)

      ggCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCCCCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGAt                                                                                          >  1:3412780/1‑100 (MQ=255)

      ggCAGCCCATCAACCTCAGATGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAgg                                                                                            >  2:257417/1‑98 (MQ=255)

       gCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGAtg                                                                                         <  2:646607/100‑1 (MQ=255)

       gCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGAtg                                                                                         <  2:799193/100‑1 (MQ=255)

        cAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGAtgt                                                                                        >  1:3190194/1‑100 (MQ=255)

         aGCCCATCAACCTCAGGTGTTCGATGCTAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGAtgtg                                                                                       <  1:595868/100‑1 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCa                                                                                     <  1:1245291/100‑1 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCa                                                                                     >  1:2532391/1‑100 (MQ=255)

           cccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTACCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCa                                                                                     <  2:362607/100‑1 (MQ=255)

            ccATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCAt                                                                                    <  2:2029266/100‑1 (MQ=255)

             cATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCCCGCCCATCCCTTTGTATTCCGGCATCACCGCCA‑GGGGGGCGAGGATGTGCATc                                                                                   >  1:1701439/1‑100 (MQ=255)

             cATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCAGCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATc                                                                                   >  2:923565/1‑100 (MQ=255)

              aTCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCa                                                                                  <  1:3792076/100‑1 (MQ=255)

                 aaCCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACg                                                                               <  1:2421262/100‑1 (MQ=255)

                    cTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTg                                                                            <  1:2393154/100‑1 (MQ=255)

                    cTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTg                                                                            <  2:3871441/100‑1 (MQ=255)

                    cTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTg                                                                            <  1:3442563/100‑1 (MQ=255)

                       agttGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTg                                                                            <  2:3084174/94‑1 (MQ=255)

                        ggTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATc                                                                        >  1:3882380/1‑100 (MQ=255)

                        ggTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATc                                                                        >  2:445099/1‑100 (MQ=255)

                         gTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATcc                                                                       >  1:151641/1‑100 (MQ=255)

                            cTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCAtt                                                                    <  2:2710024/100‑1 (MQ=255)

                            cTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGAATCAACAGTAAATCCAtt                                                                    >  2:3613105/1‑100 (MQ=255)

                              cGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTtc                                                                  >  1:3732127/1‑100 (MQ=255)

                                      gTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGa                                                          <  2:2763770/100‑1 (MQ=255)

                                         cGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAgg                                                       >  1:1814458/1‑100 (MQ=255)

                                         cGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAgg                                                       >  2:3195607/1‑100 (MQ=255)

                                          gTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGt                                                      >  2:1276259/1‑100 (MQ=255)

                                           tATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGtt                                                     >  1:3294723/1‑100 (MQ=255)

                                             tCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGc                                                   >  2:2965516/1‑100 (MQ=255)

                                              cAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGcc                                                  >  2:1933260/1‑100 (MQ=255)

                                              cAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGcc                                                  >  2:1934795/1‑100 (MQ=255)

                                              cAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGcc                                                  >  1:563355/1‑100 (MQ=255)

                                              cAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGcc                                                  <  1:904910/100‑1 (MQ=255)

                                               aaCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCG‑GGGGGGCGAGGATGGGCATAAACGGAGAAAACATTACTACTTAGAAgg                                                       >  1:3551131/1‑94 (MQ=255)

                                               aaCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGccc                                                 >  2:2161797/1‑100 (MQ=255)

                                                aCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGTCTTCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCg                                                <  1:469024/100‑1 (MQ=255)

                                                aCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCg                                                >  2:939404/1‑100 (MQ=255)

                                                aCCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGAGAATCCATTTCTCCTTTGAAGGTTGCCCg                                                >  2:3009682/1‑100 (MQ=255)

                                                 ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg                                               >  1:500035/1‑100 (MQ=255)

                                                 ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg                                               >  2:2504045/1‑100 (MQ=255)

                                                 ccGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCgg                                               >  2:1683625/1‑100 (MQ=255)

                                                  cGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCggg                                              >  2:3547349/1‑100 (MQ=255)

                                                   gTCCTCCCACGCCCATCCCTTGTTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCggg                                              <  2:3513563/99‑1 (MQ=255)

                                                   gTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGt                                             >  2:590455/1‑100 (MQ=255)

                                                    tcctccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGta                                            >  2:1540599/1‑100 (MQ=255)

                                                    tcctccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGta                                            <  2:1038964/100‑1 (MQ=255)

                                                     cctccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaa                                           >  2:1652190/1‑100 (MQ=255)

                                                      ctccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaa                                          >  2:3738367/1‑100 (MQ=255)

                                                      ctccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaa                                          >  1:448650/1‑100 (MQ=255)

                                                      ctccCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTATCCTTTGAAGGTTGCCCGGGtaaa                                          >  1:441584/1‑100 (MQ=255)

                                                        cccACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaata                                        >  1:2943253/1‑100 (MQ=255)

                                                        cccACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGaaaata                                        >  1:1767250/1‑100 (MQ=255)

                                                         ccACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaataa                                       <  2:2957072/100‑1 (MQ=255)

                                                          cACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaataaa                                      <  2:1788764/100‑1 (MQ=255)

                                                          cACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGtaaataaa                                      >  1:2245839/1‑100 (MQ=255)

                                                          cACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GCGGGGAGAGGATGTGCATTAACGGTGAATCCATTTCTCCTTTGAAGGTTGACCGGGtcaatcaa                                      >  2:778379/1‑100 (MQ=255)

                                                             gCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTaaataaaata                                   >  2:1148615/1‑100 (MQ=255)

                                                              cccATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAatat                                  >  2:1696921/1‑100 (MQ=255)

                                                                cATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGc                                >  2:1691479/1‑100 (MQ=255)

                                                                 aTCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGcc                               <  1:3369015/100‑1 (MQ=255)

                                                                 aTCCCTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCAAGGAAAATAAAATATGc                                >  1:1619388/1‑99 (MQ=255)

                                                                   cccTTGGTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCg                             >  2:1326553/1‑100 (MQ=255)

                                                                        ggTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGc                        >  2:3481369/1‑100 (MQ=255)

                                                                         gTATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCt                       <  1:3051094/100‑1 (MQ=255)

                                                                          tATTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCtt                      >  2:2242014/1‑100 (MQ=255)

                                                                           aTTCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCttt                     <  2:1537151/100‑1 (MQ=255)

                                                                             tCCGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGc                   >  1:1550581/1‑100 (MQ=255)

                                                                              ccGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGcc                  >  2:3376456/1‑100 (MQ=255)

                                                                              ccGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGcc                  <  1:3493990/100‑1 (MQ=255)

                                                                               cGGTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCATTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCt                 <  2:3461305/100‑1 (MQ=255)

                                                                               cGGTATGACCGCCA‑GGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCt                 <  1:1025719/100‑1 (MQ=255)

                                                                                ggTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGTATCCATTTCTCCTTTGAAGGTTGTCCGGGTAAATAAAATATGACCGACGGCTTTACCtt                >  1:1728227/1‑100 (MQ=255)

                                                                                 gTATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGTAGGTGGCCCGGGTAAATAAAATATTCCCGACGGCTTTGcat                 >  2:2444120/1‑96 (MQ=255)

                                                                                  tATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCa              <  1:2242034/100‑1 (MQ=255)

                                                                                  tATGACCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGCGTAAATAAAATATGCCCGACGGCTTTGCCTTCa              <  2:2589042/100‑1 (MQ=255)

                                                                                    tGACCGCCAGGGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCAt             <  2:2289958/100‑1 (MQ=255)

                                                                                      aCCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATAcc          >  2:3537606/1‑100 (MQ=255)

                                                                                      aCCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATAcc          >  1:3267479/1‑100 (MQ=255)

                                                                                      aCCGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATAcc          >  2:12246/1‑100 (MQ=255)

                                                                                       ccGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCg         >  2:2072541/1‑100 (MQ=255)

                                                                                       ccGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTACCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCg         >  1:3137901/1‑100 (MQ=255)

                                                                                        cGCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCgg        >  1:2854295/1‑100 (MQ=255)

                                                                                         gCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCggg       >  2:1318995/1‑100 (MQ=255)

                                                                                         gCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCggg       <  1:883916/100‑1 (MQ=255)

                                                                                         gCCA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCggg       >  1:2616760/1‑100 (MQ=255)

                                                                                          ccA‑GGGGGGCGAGGATGTGCATCAACGTTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGc      <  1:1901323/100‑1 (MQ=255)

                                                                                           cA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCt     <  2:3294689/100‑1 (MQ=255)

                                                                                           cA‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCt     <  1:3835951/100‑1 (MQ=255)

                                                                                            a‑GGGGGGCTAGTATGTGCATCTACTGTGAATCCATTTCCCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCTACGGCTTTGCCTTCATACCggg       <  2:3351283/97‑1 (MQ=255)

                                                                                            a‑GGGGGGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTa    >  1:675512/1‑100 (MQ=255)

                                                                                            a‑GGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTa    >  2:3375664/1‑100 (MQ=255)

                                                                                              ggggggCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTag   >  1:255998/1‑100 (MQ=255)

                                                                                               ggggGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTagc  <  1:1156660/100‑1 (MQ=255)

CCGTCTGGCAGCCCATCAACCTCAGGTGCTCGATGCCAGTGCGTATCAACCGTCCTCCCACGCCCATCCCTTGGTATTCCGGTATGACCGCCA‑GGGGAGCGAGGATGTGCATCAACGGTGAATCCATTTCTCCTTTGAAGGTTGCCCGGGTAAATAAAATATGCCCGACGGCTTTGCCTTCATACCGGGCTAGC  >  NC_000913/4533439‑4533632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A