Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F181 I0 R1
|
65 |
126.1 |
6126155 |
96.5% |
5911739 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,038,330:1 |
(T)5→6 |
100% |
coding (493/711 nt) |
dsbC ← |
protein disulfide isomerase II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,038,325 | 1 | . | T | 77.8%
| 389.3
/ 107.2
| 135 | coding (498/711 nt) | dsbC | protein disulfide isomerase II |
| Reads supporting (aligned to +/- strand): ref base . (16/14); new base T (50/55); total (66/69) |
| Fisher's exact test for biased strand distribution p-value = 6.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 152 total aligned reads displayed.
AACGCCAAGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACGGTGATCCC > NC_000913/3038226‑3038420
|
cGCCAAGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt > 1:121141/1‑100 (MQ=255)
cGCCAAGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt > 2:1706666/1‑100 (MQ=255)
ccAAGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑tt > 1:2645680/1‑100 (MQ=255)
ccAAGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑tt > 1:1752845/1‑100 (MQ=255)
cAAGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑ttt < 1:3039181/100‑1 (MQ=255)
aaGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑tttt < 1:1303374/100‑2 (MQ=255)
gCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGTTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑ttttat < 1:88027/100‑4 (MQ=255)
gCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑ttttat < 1:219392/100‑4 (MQ=255)
gCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATc > 2:1452674/1‑100 (MQ=255)
cTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑ttttatc < 2:1768200/100‑5 (MQ=255)
tGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑tt‑ttttatct < 1:1590997/100‑6 (MQ=255)
ggACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCtt < 1:1483570/100‑1 (MQ=255)
ggACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCtt > 1:752102/1‑100 (MQ=255)
gACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTc < 1:182357/100‑1 (MQ=255)
aCGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTc < 2:121143/100‑1 (MQ=255)
gCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGc < 1:23527/100‑1 (MQ=255)
ccAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGca > 1:912908/1‑100 (MQ=255)
ccAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTCGc < 1:467661/98‑1 (MQ=255)
cAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGcac > 1:636203/1‑100 (MQ=255)
aaGTGCGTAATGGTAGGCAATACCCACGTCGCAACTGGCTGGTGCGACGCTTTTCCCTGCCATCACATCATCAAACGCTTT‑TTTT‑TTT‑ATCTTTc < 1:251797/95‑1 (MQ=255)
cGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGa > 1:910110/1‑100 (MQ=255)
cGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGa > 2:1904260/1‑100 (MQ=255)
gTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCTATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGAt < 1:2229052/100‑1 (MQ=255)
aTGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGc > 1:2722344/1‑100 (MQ=255)
ggTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCtt > 2:2750674/1‑100 (MQ=255)
gTCGGCAATATCCACGTCTCAACTGGCTTGTGCGACGCTTTTACTTGCCATCCCATCATCAAACGTTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCttn < 1:1095477/100‑2 (MQ=255)
tCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTc < 1:1307813/100‑1 (MQ=255)
tCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTc < 2:2722360/100‑1 (MQ=255)
tCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTc < 2:1575245/100‑1 (MQ=255)
cGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACCCCAGATAGCTCTCa > 1:3032797/1‑100 (MQ=255)
cGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCa > 1:1362603/1‑100 (MQ=255)
cGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCa > 1:851126/1‑100 (MQ=255)
cGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCa > 1:1729184/1‑100 (MQ=255)
cGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAt > 2:1990465/1‑100 (MQ=255)
aaTATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttc < 2:2664207/100‑1 (MQ=255)
aaTATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttct < 2:1942981/100‑1 (MQ=255)
tatCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttctt < 1:1354600/100‑1 (MQ=255)
tatCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttctt < 1:1176486/100‑1 (MQ=255)
tatCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttctt < 2:2533113/100‑1 (MQ=255)
taaaagcgtcgcaccagccagttgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttctt > 2:2592218‑M2/30‑100 (MQ=255)
taaaagcgtcgcaccagccagttgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttctt > 2:114113‑M2/30‑100 (MQ=255)
atCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttcttt < 1:349161/100‑1 (MQ=255)
atCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttcttt < 1:2905672/100‑1 (MQ=255)
aaaagcgtcgcaccagccagttgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttcttt > 1:2043981‑M2/29‑100 (MQ=255)
tCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATAATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttcttt > 1:1890991/1‑99 (MQ=255)
ccACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCAtttctttc < 1:1904676/99‑1 (MQ=255)
ccACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTCTCGCACACCAGATAGCTTTCATttctttct > 2:1709823/1‑100 (MQ=255)
aagcgtcgcaccagccagttgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATttctttct > 1:402415‑M2/27‑100 (MQ=255)
aagcgtcgcaccagccagttgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTtctc > 2:2872571‑M2/27‑100 (MQ=255)
agcgtcgcaccagccagttgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTtctc > 2:1845357‑M2/26‑100 (MQ=255)
aCGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTctct > 1:821432/1‑100 (MQ=255)
CGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTTTATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTg > 1:806175‑M1/1‑100 (MQ=255)
GTCGCAACTGGCTGGTGCGATGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTg > 1:2469324‑M1/1‑98 (MQ=255)
GTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTTTATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGc > 2:2917194‑M1/1‑100 (MQ=255)
TCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTTTATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCa > 1:2913790‑M1/1‑100 (MQ=255)
GCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTTTATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATc > 1:2286787‑M1/1‑100 (MQ=255)
GCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTTTATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATc < 1:790606‑M1/100‑1 (MQ=255)
AACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTTTATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGc < 2:762648‑M1/100‑1 (MQ=255)
AACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTTTATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGc > 2:636208‑M1/1‑100 (MQ=255)
ctggctggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATATCTTTCATTTCTTTCTCTGCATCGCTg < 2:1860129/100‑1 (MQ=255)
ctggctggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTg < 2:1654453/100‑1 (MQ=255)
ggctggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGtt < 2:784314/100‑2 (MQ=255)
ggctggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTc > 2:754221/1‑100 (MQ=255)
gctggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTcc < 1:1612737/100‑1 (MQ=255)
ctggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCa < 2:1592925/100‑1 (MQ=255)
ctggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCa < 2:2767264/100‑1 (MQ=255)
tggTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAg < 2:1342246/100‑1 (MQ=255)
tgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGccc < 2:1524748‑M2/93‑1 (MQ=255)
tgcgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGccc < 2:589567‑M2/93‑1 (MQ=255)
cgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCt > 2:676420‑M2/6‑100 (MQ=255)
cgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCt > 2:366746‑M2/6‑100 (MQ=255)
cgacgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTAGCACACCAGATAGATTTCATTTCTCTCTCTACATCGCTGTACa > 1:2653779‑M2/6‑94 (MQ=255)
cgCTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGgc > 2:2195120‑M2/3‑100 (MQ=255)
cTTTTACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGgcgc > 1:2873772/1‑100 (MQ=255)
ttACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCggg < 1:345881/100‑1 (MQ=255)
ttACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCggg < 2:1042047/100‑1 (MQ=255)
ttACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCggg < 2:2516068/100‑1 (MQ=255)
tACCTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGcgcg < 1:209896/97‑1 (MQ=255)
aCCTGCCATCACATCATCAAACGCTTTGG‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGa > 2:857865/1‑99 (MQ=255)
ccTGCCATCACATCATCCAACGCTCT‑G‑TTATTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTCTCTCTGCATCGCTGTCCAGCCCCTGGCGCggg < 2:2902773/97‑1 (MQ=255)
cTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAg < 1:1964099/100‑1 (MQ=255)
cTGCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTCTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAg < 1:690824/100‑1 (MQ=255)
gCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCa > 1:2826512/1‑100 (MQ=255)
gCCATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCa > 1:106120/1‑100 (MQ=255)
ccATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCaa < 2:1761048/100‑1 (MQ=255)
ccATCACATCATCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCaa < 2:1560568/100‑1 (MQ=255)
atcacatcaTCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGa < 1:75713/100‑1 (MQ=255)
catcatCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAAc < 2:912913/100‑1 (MQ=255)
catcatCAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAAc < 2:2376466/100‑1 (MQ=255)
atcatcAAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACg < 2:346789/100‑1 (MQ=255)
atcaAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCAc > 2:548935/1‑100 (MQ=255)
atcaAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCAc > 2:1658013/1‑100 (MQ=255)
atcaAACGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCAc > 2:1455778/1‑99 (MQ=255)
caAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACgg < 2:2043993/100‑1 (MQ=255)
caAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACgg > 1:2571904/1‑100 (MQ=255)
caAACGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACg > 1:1674516/1‑99 (MQ=255)
aaaCGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACGGTg < 2:2704972/100‑1 (MQ=255)
aCGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACGGTGa < 2:24177/100‑1 (MQ=255)
cGCTTT‑GTTT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACGGTGAt < 2:2921908/100‑1 (MQ=255)
cTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACGGTGATccc > 1:2714737/1‑100 (MQ=255)
|
AACGCCAAGCTGGACGCCAAGTGCGTAATGGTCGGCAATATCCACGTCGCAACTGGCTGGTGCGACGCTTTTACCTGCCATCACATCATCAAACGCTTT‑G‑TT‑TTT‑ATCTTTCGCACACCAGATAGCTTTCATTTCTTTCTCTGCATCGCTGTCCAGCCCCTGGCGCGGGAAAGCAAGATAACGCACGGTGATCCC > NC_000913/3038226‑3038420
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
