Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F212 I0 R1 246 122.0 6097616 93.1% 5676880 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,712,518 (C)6→5 100% intergenic (+360/‑251) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,712,5130C.97.7% 377.6 / ‑1.2 85intergenic (+355/‑256)nth/dtpADNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base . (39/44);  minor base T (0/1);  total (40/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.60e-01

Only 100 of 102 total aligned reads displayed.

TATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCA  >  NC_000913/1712414‑1712608
                                                                                                   |                                                                                               
tatTGACCTACAAAACATTACACTGGTTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAc                                                                                                 <  1:1492553/100‑1 (MQ=255)
tatTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAc                                                                                                 >  2:1559591/1‑100 (MQ=255)
tatTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAc                                                                                                 <  2:1827558/100‑1 (MQ=255)
tatTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAAAATATCGCCGTTAAGCCATCAc                                                                                                 >  1:2995940/1‑100 (MQ=255)
  ttGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccc                                                                                               >  2:2189950/1‑100 (MQ=255)
  ttGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATAAc                                                                                                 >  1:1803880/1‑98 (MQ=255)
   tGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAcccc                                                                                              <  2:1249962/100‑1 (MQ=255)
   tGACCTACAAAAAATTACACTGGCTATTTGTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccc                                                                                               <  2:2451380/99‑1 (MQ=255)
    gACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc                                                                                             <  1:2090006/100‑1 (MQ=255)
    gACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc                                                                                             >  1:1886928/1‑100 (MQ=255)
    gACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc                                                                                             <  1:1389522/100‑1 (MQ=255)
    gACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc                                                                                             >  2:815482/1‑100 (MQ=255)
       cTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctc                                                                                           >  2:960035/1‑97 (MQ=255)
       cTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAcaccctct                                                                                          >  2:2801700/1‑97 (MQ=255)
        tACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctctc                                                                                         <  1:2813551/100‑5 (MQ=255)
        tACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctctc                                                                                         >  1:1207159/1‑96 (MQ=255)
        tACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATAGCCGTTAAGCCATAAccccctctc                                                                                         >  1:1256757/1‑96 (MQ=255)
           aaaaTATTACACTGTCTATTTTTAAGAAACTGTACTATCTCACTAGTAAAATCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcag                                                                                      <  2:2558369/99‑1 (MQ=255)
            aaaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtg                                                                                    >  2:964291/1‑100 (MQ=255)
             aaaaTTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAATACGCTAAATCGCAGAACATATCGCCGTTTAGCCATCA‑CCCCCTCTcagtgc                                                                                   <  2:1967152/97‑1 (MQ=255)
                    cacTTGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaa                                                                            <  1:2267978/100‑1 (MQ=255)
                     acTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaaa                                                                           <  1:69123/100‑1 (MQ=255)
                     acTGGCTATTTTTCAGAAACTGGACTATCTCACTAGGAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCATCCCCCTCTCAGGGTAGTGaaa                                                                            <  2:2124178/100‑1 (MQ=255)
                       tGGCTATTTTTCAGTAACTGGACTATCTCACTATTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaaaaa                                                                         <  1:1766028/100‑1 (MQ=255)
                       tGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAGTAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaaaaa                                                                         >  1:2444478/1‑100 (MQ=255)
                       tGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaaaaa                                                                         <  1:1853832/100‑1 (MQ=255)
                         gCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATc                                                                       <  1:200763/100‑1 (MQ=255)
                             tttttCAGAAACTGGACTATCTAACTAGTAAAAACGCTAAATAGAAGAACATATCGCCGTTAAGCCATCACCCCCC‑CTCAGTGCTGTGaacaaacat                                                                      >  2:1262664/1‑94 (MQ=255)
                               tttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCg                                                                  >  1:1491738/1‑99 (MQ=255)
                                ttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCg                                                                  >  1:705570/1‑98 (MQ=255)
                                ttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGtt                                                                >  2:2037921/1‑100 (MQ=255)
                                ttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGtt                                                                >  2:2368673/1‑100 (MQ=255)
                                   aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACg                                                             >  1:253731/1‑100 (MQ=255)
                                    gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACg                                                             >  1:869611/1‑99 (MQ=255)
                                    gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGt                                                            >  1:176609/1‑100 (MQ=255)
                                    gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGt                                                            >  1:2162056/1‑100 (MQ=255)
                                     aaaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGt                                                            >  2:305716/1‑99 (MQ=255)
                                         tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttt                                                       <  1:2374785/100‑1 (MQ=255)
                                          ggACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      >  1:2963053/1‑100 (MQ=255)
                                          ggACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      <  1:920243/100‑1 (MQ=255)
                                            agtATCTAAGTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑TCCTCTAAAAAAAAAAAAAAAAAATCTGCCGTTACGTTTTTTg                                                      <  2:2580616/96‑1 (MQ=255)
                                             cTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGAAGTAAAAAAATCTGCCGTTACGTTTTTTGaaa                                                   >  2:400374/1‑100 (MQ=255)
                                              tATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      <  2:757651/96‑1 (MQ=255)
                                              tATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCATTACGTTTTTTGaaaa                                                  >  1:1274953/1‑100 (MQ=255)
                                                 ctcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAtt                                               <  2:2250767/100‑1 (MQ=255)
                                                 ctcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAtt                                               <  2:1170573/100‑1 (MQ=255)
                                                  tcACTAGTAAATACGCTAAATAGCAAAACATATCACCGTTAAGCCATCA‑CCCACTCTCAGTGAAGTGAAAAAATCTGCCGTTACGTTTATTGaaaa                                                  >  2:1783304/1‑96 (MQ=255)
                                                  tcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATATGCCGTTACGTTTTTTGAAAAAttt                                              >  1:1700914/1‑100 (MQ=255)
                                                   cACTAGTAAAAACGCTAAATAGCAGATCATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTa                                             <  1:2870348/100‑1 (MQ=255)
                                                   cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTa                                             <  1:2687173/100‑1 (MQ=255)
                                                   cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTa                                             >  1:1993415/1‑100 (MQ=255)
                                                     cttccgatctcGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc                                           <  2:2093536/90‑1 (MQ=255)
                                                     cTAGTAAAAACGCTAAATAGTAGAACTTATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc                                           <  1:1017129/100‑1 (MQ=255)
                                                      tAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACg                                          <  2:914627/100‑1 (MQ=255)
                                                       aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTTCCGTTACGTTTTTTGAAAAATTTaa                                            >  1:2895687/1‑97 (MQ=255)
                                                        gTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCt                                        >  1:523537/1‑100 (MQ=255)
                                                        gTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAAACTGCCGTTACGTTTTTTGAAAAATTTAACGCt                                        >  1:2405798/1‑100 (MQ=255)
                                                         tAAAAACGCTAAATAGCAGAACATATCGCTGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTg                                       <  2:3032336/100‑1 (MQ=255)
                                                          aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGCAAAAATCTGCCGTTACGTTTTTTTAAAAATATAACg                                          >  2:571263/1‑96 (MQ=255)
                                                          aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTgg                                      <  1:928687/100‑1 (MQ=255)
                                                           aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGa                                     <  2:945900/100‑1 (MQ=255)
                                                           aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTCGa                                     >  2:2471123/1‑100 (MQ=255)
                                                            aaaCGCTAAATAGCAGAACATATCGCCGTTAAGCGATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGAt                                    <  2:78362/100‑1 (MQ=255)
                                                               cGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAcagatcggaag                                 >  1:2093559/1‑90 (MQ=255)
                                                               cGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAAc                                 >  2:460611/1‑100 (MQ=255)
                                                                 cTAAATAGCAGAACATATCGCCGTTAAGTTATCA‑CCCCCTCTTAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa                                <  1:288747/99‑1 (MQ=255)
                                                                  tAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAtt                              >  2:2650082/1‑100 (MQ=255)
                                                                       aGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCg                         <  2:1023315/100‑1 (MQ=255)
                                                                        gCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCTGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg                        <  1:2325783/100‑1 (MQ=255)
                                                                        gCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg                        <  2:2482470/100‑1 (MQ=255)
                                                                          aGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGaaa                      >  2:2514226/1‑100 (MQ=255)
                                                                          aGAACATATCGCCGTTAAACAAACA‑CCCTCTCTAAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAGCATTTTACGCTGGATa                                   >  2:2591261/1‑87 (MQ=255)
                                                                             aCATATCCCCGTTAAGCCATCA‑CCCCCTCTCAATGAAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATgg                   <  2:1623065/100‑1 (MQ=255)
                                                                              cATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGt                  <  1:25905/100‑1 (MQ=255)
                                                                               atatCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGtt                 <  2:1557259/100‑1 (MQ=255)
                                                                               atatCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGtt                 <  2:491544/100‑1 (MQ=255)
                                                                                tatCGCCGTTAAGCTATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTg                <  1:1399306/100‑1 (MQ=255)
                                                                                tatCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTg                <  2:2463538/100‑1 (MQ=255)
                                                                                tatCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTg                >  1:2463567/1‑100 (MQ=255)
                                                                                  tCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGaa              >  2:1189306/1‑100 (MQ=255)
                                                                                  tCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGaa              >  2:32695/1‑100 (MQ=255)
                                                                                  tCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGATGaa              >  2:1260650/1‑100 (MQ=255)
                                                                                  tCGCCATTAAGCCATCA‑CCCCCTCTCAGTGCAATGAAAAAATCTGCCGTTACGTTTTTTAAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGaa              <  2:52471/100‑1 (MQ=255)
                                                                                   cGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAt             >  2:2665048/1‑100 (MQ=255)
                                                                                   cGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAt             <  1:684347/100‑1 (MQ=255)
                                                                                   cGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAt             <  2:2911742/100‑1 (MQ=255)
                                                                                    gCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAtt            <  1:2084724/100‑1 (MQ=255)
                                                                                    gCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAtt            <  1:2883241/100‑1 (MQ=255)
                                                                                    gCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAt             <  1:2649897/99‑1 (MQ=255)
                                                                                     ccGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTTAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTc           >  2:2070579/1‑100 (MQ=255)
                                                                                     ccGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTc           >  1:968244/1‑100 (MQ=255)
                                                                                      cGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTcc          <  2:445729/100‑1 (MQ=255)
                                                                                       gTTACGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGCATGGTTGAAttgc          >  2:1289175/1‑97 (MQ=255)
                                                                                       gTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTccc         >  1:2515020/1‑100 (MQ=255)
                                                                                        ttAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTcccc        <  2:1259432/100‑1 (MQ=255)
                                                                                         tAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCg       <  1:2650114/100‑1 (MQ=255)
                                                                                          aaGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc      <  1:2552997/100‑1 (MQ=255)
                                                                                           aGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc     <  2:2759389/100‑1 (MQ=255)
                                                                                              cATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCa  >  1:2174182/1‑100 (MQ=255)
                                                                                              cATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGAATAACATTTACCGGAATGGTTGAATTCCCCGCCTCa  >  1:102078/1‑100 (MQ=255)
                                                                                                   |                                                                                               
TATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCA  >  NC_000913/1712414‑1712608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A