Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I0 R1 200 171.4 8351354 94.3% 7875326 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,712,518 (C)6→5 100% intergenic (+360/‑251) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,712,5130C.97.0% 583.2 / 8.0 132intergenic (+355/‑256)nth/dtpADNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
Reads supporting (aligned to +/- strand):  ref base C (2/1);  new base . (69/59);  total (71/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01

Only 100 of 147 total aligned reads displayed.

TATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCA  >  NC_000913/1712414‑1712608
                                                                                                   |                                                                                               
ttttGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAGCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAc                                                                                                 <  2:1543563/98‑1 (MQ=255)
tatTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAc                                                                                                 >  1:578954/1‑100 (MQ=255)
  ttGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAcc                                                                                                <  1:1474883/99‑1 (MQ=255)
    gACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc                                                                                             >  2:679050/1‑100 (MQ=255)
    gACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc                                                                                             >  1:3690877/1‑100 (MQ=255)
    gACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc                                                                                             >  1:2158690/1‑100 (MQ=255)
       cTACAAAACATTACACTGGCTATTTTTTTTTTTTTTTACTCTCTCACTAGTAAAAACGCTAAATAGCATAACATATCGCCGTTAAGCCATCAccccctct                                                                                          >  2:1065431/1‑97 (MQ=255)
         aCAAAACATTACACTGGCTATTTTTCAGAGACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTca                                                                                       >  1:3244157/1‑100 (MQ=255)
         aCAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctctc                                                                                         >  1:2415413/1‑95 (MQ=255)
          cAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTca                                                                                       >  2:930391/1‑99 (MQ=255)
           aaaaCATTACACTGGCTATTTTTCAGAAACTTGACTATCTCACTAGTCAAAACGCTAAATCCCAGAACATATCGCCTTCAATCCATCA‑CCCCCTCTcaat                                                                                     >  2:2931701/1‑98 (MQ=255)
             aaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtgc                                                                                   <  1:1690761/100‑1 (MQ=255)
             aaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtgc                                                                                   >  2:3701425/1‑100 (MQ=255)
             aaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtgc                                                                                   <  2:3196666/100‑1 (MQ=255)
              aCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtgca                                                                                  <  2:2738633/100‑1 (MQ=255)
                aTTACACTGTCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAGCTAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtgcagt                                                                                <  2:2625825/100‑1 (MQ=255)
                    cacTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAGACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaa                                                                            >  1:1614883/1‑100 (MQ=255)
                     acTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaaa                                                                           <  1:1887501/100‑1 (MQ=255)
                        ggCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGaaaaaa                                                                         >  1:3881099/1‑100 (MQ=255)
                        ggCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAAt                                                                        >  1:3823958/1‑100 (MQ=255)
                         gCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATc                                                                       >  1:1149362/1‑100 (MQ=255)
                          cTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCt                                                                      >  1:476089/1‑100 (MQ=255)
                           tATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTg                                                                     >  1:3082524/1‑100 (MQ=255)
                             tttttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGcc                                                                   <  2:2940100/100‑1 (MQ=255)
                              ttttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCg                                                                  >  1:2014459/1‑100 (MQ=255)
                                ttCAGAAACTGGACTATCTCACTATTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGtt                                                                <  2:1824697/100‑1 (MQ=255)
                                ttCAGAAACTGGACTATCTCACTAGTAAAGACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGtt                                                                <  2:1614874/100‑1 (MQ=255)
                                  cAGAAACTGGACTATCTCACTAGTAAAGCCGCTAAATAGCAGAACATATCGACGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAACATCTGCCGTTAc                                                              >  1:850373/1‑100 (MQ=255)
                                  cAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTAc                                                              >  2:521795/1‑100 (MQ=255)
                                  cAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTAc                                                              >  1:2756956/1‑100 (MQ=255)
                                   aGAATCTTGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACg                                                             <  2:3893500/100‑1 (MQ=255)
                                   aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACg                                                             >  2:756141/1‑100 (MQ=255)
                                   aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACg                                                             <  1:2514163/100‑1 (MQ=255)
                                      aaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAAAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGTCGATACGttt                                                          >  2:2235578/1‑100 (MQ=255)
                                         tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttt                                                       <  1:3379936/100‑1 (MQ=255)
                                         tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATC‑TTCCCCTCTCAAAAAAAAAAAAAAATCTGCCGTTACGtttttt                                                       <  2:294178/100‑1 (MQ=255)
                                          ggACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      >  1:1919385/1‑100 (MQ=255)
                                          ggACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      >  2:1739407/1‑100 (MQ=255)
                                          ggACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      <  2:3200527/100‑1 (MQ=255)
                                           gACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      >  2:3802745/1‑99 (MQ=255)
                                            aCTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                                                      <  2:2195434/98‑1 (MQ=255)
                                            aCTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaa                                                    <  2:1836896/100‑1 (MQ=255)
                                                tctcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAt                                                <  2:2336530/100‑1 (MQ=255)
                                                 ctcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttttataattt                                               >  2:861993/1‑92 (MQ=255)
                                                  tcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAttt                                              <  1:1752058/100‑1 (MQ=255)
                                                  tcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAttt                                              >  1:2561914/1‑100 (MQ=255)
                                                   cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTa                                             >  1:769104/1‑100 (MQ=255)
                                                   cACTAGTAAAAACGCTAAATAGAAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAACTCTGCCGTTACGTTTTTTGAAAAATTTa                                             >  2:2421195/1‑100 (MQ=255)
                                                     cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTTAAAAATTTa                                             >  2:3063791/1‑98 (MQ=255)
                                                     cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc                                           >  2:3847277/1‑100 (MQ=255)
                                                     cTAGTAAAAACGCTAAATAGCAGAACAGATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc                                           <  1:1007744/100‑1 (MQ=255)
                                                       aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAACAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGc                                         >  1:1945202/1‑100 (MQ=255)
                                                       aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGc                                         <  1:1049744/100‑1 (MQ=255)
                                                       aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGc                                         <  1:1778140/100‑1 (MQ=255)
                                                       aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGc                                         >  1:4055291/1‑100 (MQ=255)
                                                        gTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCt                                        <  2:3317508/100‑1 (MQ=255)
                                                         tAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTg                                       <  1:104575/100‑1 (MQ=255)
                                                          ttccgatcTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTgg                                      <  1:680363/93‑1 (MQ=255)
                                                          aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTgg                                      <  1:1459576/100‑1 (MQ=255)
                                                           aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGa                                     <  1:2767669/100‑1 (MQ=255)
                                                           aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGa                                     >  1:1832876/1‑100 (MQ=255)
                                                             aaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAGTCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATa                                   <  2:2561899/100‑1 (MQ=255)
                                                             aaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATa                                   <  1:2365892/100‑1 (MQ=255)
                                                               cGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAAc                                 <  1:3950434/100‑1 (MQ=255)
                                                                gCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa                                >  2:2135465/1‑100 (MQ=255)
                                                                gCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGAAAAGTAAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa                                <  2:2699307/100‑1 (MQ=255)
                                                                  tAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAtt                              >  1:1310903/1‑100 (MQ=255)
                                                                   aaaTAGCAGAACATATCGCCGTTAAGCCATCACACCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAtt                              >  2:3498989/1‑100 (MQ=255)
                                                                   aaaTAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGagatcggaa                             >  2:680359/1‑92 (MQ=255)
                                                                    aaTAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTc                            >  2:2468034/1‑100 (MQ=255)
                                                                      tAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTccc                          >  1:453422/1‑100 (MQ=255)
                                                                        gCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg                        >  1:3489526/1‑100 (MQ=255)
                                                                        gCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTAAAAAAAAAAAAAAATTTAACGCTGGATAACATTTCCCgg                        <  2:1101651/100‑1 (MQ=255)
                                                                         cAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGa                       <  2:4090402/100‑1 (MQ=255)
                                                                           gAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAAt                     >  1:981252/1‑100 (MQ=255)
                                                                            aaCATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATg                    <  2:1749496/100‑1 (MQ=255)
                                                                             aCATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATgg                   >  1:1809860/1‑100 (MQ=255)
                                                                                ttccgatcttAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGttn                <  1:3287468/92‑2 (MQ=255)
                                                                                tatCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTg                <  2:1247189/100‑1 (MQ=255)
                                                                                tatCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTg                >  2:2808415/1‑100 (MQ=255)
                                                                                tatCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTg                <  1:3600736/100‑1 (MQ=255)
                                                                                  tCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTTTTATATTTAACGCTGGATAACATTTCCCGGAATGGtt                 >  2:3547382/1‑97 (MQ=255)
                                                                                  tCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGaa              <  1:3038472/100‑1 (MQ=255)
                                                                                  tCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGa               >  2:305727/1‑99 (MQ=255)
                                                                                   cGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAt             >  2:777906/1‑100 (MQ=255)
                                                                                     ccGTTAAGCCATCA‑CCCCCTCTTAGTGCAGTTAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAt             <  2:2029535/98‑1 (MQ=255)
                                                                                     ccGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTc           >  1:1387770/1‑100 (MQ=255)
                                                                                      cGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTcc          <  2:4122201/100‑1 (MQ=255)
                                                                                        ttAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTcccc        <  1:854447/100‑1 (MQ=255)
                                                                                        ttAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACACTTCCCGGAATGGTTGAATTcccc        >  2:1258779/1‑100 (MQ=255)
                                                                                         tAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCg       >  1:1134544/1‑100 (MQ=255)
                                                                                         tAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCg       >  2:3570541/1‑100 (MQ=255)
                                                                                         naaGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAAGATTTCCCGGAATGGTTGaggtag          >  2:3287445/2‑92 (MQ=255)
                                                                                          aaGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTAGATAACATTTCCCGGAATGGTTGAATTCCCCGc      >  2:2655966/1‑100 (MQ=255)
                                                                                           aGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc     >  2:545412/1‑100 (MQ=255)
                                                                                           aGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc     <  1:596611/100‑1 (MQ=255)
                                                                                           aGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc     >  1:4073580/1‑100 (MQ=255)
                                                                                             ccATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATTACATTTCCCGGAATGGTTGAATTCCCCGCCTc   <  1:3958955/100‑1 (MQ=255)
                                                                                             ccATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTc   >  1:3043845/1‑100 (MQ=255)
                                                                                              cATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCa  >  2:2400190/1‑100 (MQ=255)
                                                                                                   |                                                                                               
TATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCA  >  NC_000913/1712414‑1712608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A