Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F212 I0 R1 246 122.0 6097616 93.1% 5676880 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,150,120 T→C 100% F153F (TTT→TTC)  yghA → putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,150,1200TC97.9% 346.6 / ‑2.9 109F153F (TTT→TTC) yghAputative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/3);  new base C (48/56);  total (49/60)
Fisher's exact test for biased strand distribution p-value = 2.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 109 total aligned reads displayed.

AAGCGCACAAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTTCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATCACCACTTCG  >  NC_000913/3150023‑3150216
                                                                                                 |                                                                                                
aaGCGCACAAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCa                                                                                                <  2:1104594/100‑1 (MQ=255)
aaGCGCACAAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCa                                                                                                <  2:1081813/100‑1 (MQ=255)
    gcACAAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAg                                                                                            >  1:2076611/1‑100 (MQ=255)
     cacaAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAg                                                                                            >  2:908485/1‑99 (MQ=255)
      acaAGTCGTTAGGCGGGCTGGATATTATGGTGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTTCAAAAGAc                                                                                          <  2:2801763/100‑1 (MQ=255)
      acaAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGAc                                                                                          <  2:2357925/100‑1 (MQ=255)
       caAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGAcc                                                                                         <  2:534559/100‑1 (MQ=255)
       caAGGCGTTAGGCGGGCTGGATATTATGGCGCGGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGAcc                                                                                         >  1:2887733/1‑100 (MQ=255)
         aGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCtt                                                                                       >  2:2447947/1‑100 (MQ=255)
          ggCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCttt                                                                                      >  2:2470302/1‑100 (MQ=255)
            cGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAGAGACCTTTGc                                                                                    >  1:1725549/1‑100 (MQ=255)
            cGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTg                                                                                     >  1:480484/1‑99 (MQ=255)
             gTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGATCTCACCAGCGAACAGTTCCAAAAGACCTTTGcc                                                                                   <  1:1164968/100‑1 (MQ=255)
              ttAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCa                                                                                  <  1:2645459/100‑1 (MQ=255)
               tAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCAt                                                                                 <  2:1599007/100‑1 (MQ=255)
                 ggCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTa                                                                               >  2:1519678/1‑100 (MQ=255)
                        tGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGtttt                                                                        <  2:724489/100‑1 (MQ=255)
                         ggATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTc                                                                       >  2:652645/1‑100 (MQ=255)
                          gATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTcg                                                                      >  2:2058008/1‑100 (MQ=255)
                          gATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTcg                                                                      <  1:2628618/100‑1 (MQ=255)
                           atatTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTcn                                                                      <  2:2514758/99‑2 (MQ=255)
                             attatGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGTATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCgcgc                                                                   <  2:2750494/100‑1 (MQ=255)
                               tatGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATAAACGTTTTCGCGCTg                                                                 >  1:1386810/1‑100 (MQ=255)
                                atGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGt                                                                <  2:521733/100‑1 (MQ=255)
                                      cTGGTCGCCGGGAAACAGGTTGTCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGc                                                          <  1:156553/100‑1 (MQ=255)
                                      cTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGc                                                          <  1:318524/100‑1 (MQ=255)
                                      cTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGc                                                          <  2:1653641/100‑1 (MQ=255)
                                       tGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCt                                                         <  1:632044/100‑1 (MQ=255)
                                         gTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCTAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTa                                                        <  1:2536035/99‑1 (MQ=255)
                                           cGCCGTGAAACAGCTTGCCATTCCGGAAATTGCAGAACTCACCAGCGAACAGTTCCAAAAGACCTTTGCCAACAACGTTTTCGCGCTGTTCTGGCCAAcc                                                     >  2:1624095/1‑100 (MQ=255)
                                           cGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAAcc                                                     >  2:2231777/1‑100 (MQ=255)
                                           cGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTAGCGCTGTTCTGGATa                                                        >  2:2742857/1‑97 (MQ=255)
                                           cGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAAACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAAcc                                                     >  1:1852781/1‑100 (MQ=255)
                                           cGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTACAAAAGACCTTTGACATTAACGTTTTCGCGCTGTTCTGGCTaa                                                       >  1:2413055/1‑98 (MQ=255)
                                            gCCGGGAAACAGGTTGCCATTCCGGATATTGCAGTCTTCACCAGCGAACAGTTTCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAAccc                                                    <  1:1825964/100‑1 (MQ=255)
                                             ccGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCa                                                   <  2:129808/100‑1 (MQ=255)
                                               gggAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAgg                                                 >  1:2251311/1‑100 (MQ=255)
                                                ggAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGa                                                <  2:652889/100‑1 (MQ=255)
                                                ggAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGa                                                >  2:1317762/1‑100 (MQ=255)
                                                 gAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGaa                                               >  1:2612492/1‑100 (MQ=255)
                                                  aaaCAGGTTGCCATTCCTGATATTGCAGACCTCACCAGCGAACAGTTTCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGa                                                <  1:2226110/98‑1 (MQ=255)
                                                   aaCAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGc                                             >  2:1297232/1‑100 (MQ=255)
                                                   aaCAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGc                                             <  1:2447976/100‑1 (MQ=255)
                                                   aaCAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGc                                             >  2:533028/1‑100 (MQ=255)
                                                    aCAGGTTGCCATTCCGGATATTGCAGACCGCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGc                                             <  2:344588/99‑1 (MQ=255)
                                                     cAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGa                                           <  1:1541668/100‑1 (MQ=255)
                                                       ggTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGAAAGCGAt                                          >  1:732927/1‑99 (MQ=255)
                                                        gTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATcc                                        <  2:1242211/100‑1 (MQ=255)
                                                         ttGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATccc                                       <  1:263987/100‑1 (MQ=255)
                                                           gCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGATCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATccccc                                     <  1:1041140/100‑1 (MQ=255)
                                                           gCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATccccc                                     >  1:1056221/1‑100 (MQ=255)
                                                           gCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATccccc                                     <  1:1065358/100‑1 (MQ=255)
                                                           gCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATccccc                                     >  1:118976/1‑100 (MQ=255)
                                                             cATTCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTACCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTg                                   <  1:102711/100‑1 (MQ=255)
                                                                tCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTa                                >  2:134271/1‑100 (MQ=255)
                                                                tCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTa                                <  2:2806266/100‑1 (MQ=255)
                                                                tCCGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTa                                >  1:2237351/1‑100 (MQ=255)
                                                                 ccGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTAc                               >  2:407291/1‑100 (MQ=255)
                                                                 ccGGATATTGCAGACCTCAACAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTGTCGCGCTGTTAGGGCTAACCAAGAAAGCGATCCCCCTGCTAc                               >  2:2675601/1‑100 (MQ=255)
                                                                  cGGATATTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTAc                               <  2:41469/99‑1 (MQ=255)
                                                                     atatTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGaa                           >  1:3012644/1‑100 (MQ=255)
                                                                      tatTGCAGTCCTCACCAGCGAAAAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGATGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGaa                           <  1:1052968/99‑1 (MQ=255)
                                                                       atTGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAg                         >  2:2686635/1‑100 (MQ=255)
                                                                        ttGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAgg                        <  2:531555/100‑1 (MQ=255)
                                                                        ttGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAgg                        <  2:2606120/100‑1 (MQ=255)
                                                                        ttGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAgg                        <  2:2076588/100‑1 (MQ=255)
                                                                        ttGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAgg                        <  2:1288616/100‑1 (MQ=255)
                                                                        ttGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAg                         >  2:1027076/1‑99 (MQ=255)
                                                                        ttGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTATTCTAGCTAACACAGAAAGCGATCCCCCTGCTACCGAAAgg                        >  1:2439879/1‑100 (MQ=255)
                                                                         tGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGt                       >  2:83008/1‑100 (MQ=255)
                                                                         tGCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAAGAAGCGATCCCCCTGCTACCGAAAGGt                       >  2:2428890/1‑100 (MQ=255)
                                                                          gCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAgg                        >  2:773295/1‑98 (MQ=255)
                                                                          gCAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTg                      <  1:2142993/100‑1 (MQ=255)
                                                                           cAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGc                     >  2:2883090/1‑100 (MQ=255)
                                                                           cAGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGc                     >  2:376143/1‑100 (MQ=255)
                                                                            aGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCa                    <  2:480481/100‑1 (MQ=255)
                                                                            aGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCa                    <  1:185489/100‑1 (MQ=255)
                                                                            aGACCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCa                    <  1:426976/100‑1 (MQ=255)
                                                                              aCCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAg                  <  1:2878289/100‑1 (MQ=255)
                                                                              aCCTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAg                  <  1:83009/100‑1 (MQ=255)
                                                                               ccTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGt                 <  1:571775/100‑1 (MQ=255)
                                                                               ccTCACCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAAAACAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGt                 >  1:2293074/1‑100 (MQ=255)
                                                                                cTCACCAGCGAAGAGTGGCAAAAGACCTTTGTCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCTCCTGCTACCGAAAGGTGCAAGTa                <  2:2110151/100‑1 (MQ=255)
                                                                                  cACCAGCGAACAGTTCCAAAAGACCTTGGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCTCCTGCTACCTAAAGGTGCAAGTatc              <  2:1185834/100‑1 (MQ=255)
                                                                                   aCCAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTatca             <  1:1342904/100‑1 (MQ=255)
                                                                                    ccAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTatcat            >  2:1508419/1‑100 (MQ=255)
                                                                                     cAGCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTatcatc           <  2:2599266/100‑1 (MQ=255)
                                                                                     cAGCCAACAGTTCCAAAATACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTatcatc           <  1:2675633/100‑1 (MQ=255)
                                                                                       gCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATcac         >  2:326666/1‑100 (MQ=255)
                                                                                       gCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATcac         >  2:1530329/1‑100 (MQ=255)
                                                                                       gCGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGAGCAAGTATCATcac         >  2:2066753/1‑100 (MQ=255)
                                                                                        cGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATcacc        <  1:2333745/100‑1 (MQ=255)
                                                                                        cGAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATcacc        <  2:118620/100‑1 (MQ=255)
                                                                                         gAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATcacca       >  2:2965383/1‑100 (MQ=255)
                                                                                         gAACAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATcacca       >  2:1267736/1‑100 (MQ=255)
                                                                                          aaCAGTTCCAAAAGACCTTTGCCATTAACGTGTTCGCGCGGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATcacc        <  1:2891816/98‑1 (MQ=255)
                                                                                            cAGTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATCACCACtt    >  1:1759611/1‑100 (MQ=255)
                                                                                              gTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATCACCACTTCg  >  2:2861420/1‑100 (MQ=255)
                                                                                              gTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATCACCACTTCg  <  1:1322795/100‑1 (MQ=255)
                                                                                              gTTCCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATCACCACTTCg  >  1:2575611/1‑100 (MQ=255)
                                                                                                 |                                                                                                
AAGCGCACAAGGCGTTAGGCGGGCTGGATATTATGGCGCTGGTCGCCGGGAAACAGGTTGCCATTCCGGATATTGCAGACCTCACCAGCGAACAGTTTCAAAAGACCTTTGCCATTAACGTTTTCGCGCTGTTCTGGCTAACCCAGGAAGCGATCCCCCTGCTACCGAAAGGTGCAAGTATCATCACCACTTCG  >  NC_000913/3150023‑3150216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A