Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F212 I0 R1
|
246 |
122.0 |
6097616 |
93.1% |
5676880 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,708,410 |
T→A |
100% |
intergenic (‑705/+206) |
dppA ← / ← proK |
dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,708,410 | 0 | T | A | 98.7%
| 333.7
/ ‑4.1
| 112 | intergenic (‑705/+206) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| Reads supporting (aligned to +/- strand): ref base T (0/3); new base A (56/53); total (56/56) |
| Fisher's exact test for biased strand distribution p-value = 2.43e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
GGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC > NC_000913/3708313‑3708506
|
ggCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGc < 1:795849/100‑1 (MQ=255)
gCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCa > 1:2786600/1‑100 (MQ=255)
cacaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCaa > 1:2959088/1‑100 (MQ=255)
cacaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCaa > 1:2943340/1‑100 (MQ=255)
tttGCCTGATGCGACGCTGACGCGTCTTATCAGGCTTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCaaaaaa < 2:1561942/100‑1 (MQ=255)
tttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCaaaaaa < 1:2106256/100‑1 (MQ=255)
ttGGCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTAGAGTCGAACCTCCCTGCACCCGGAGGTTCTTATCGTCATGAGCTGCAGAAGCaaaaaa < 2:2738534/99‑1 (MQ=21)
ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAg < 1:1002100/100‑1 (MQ=255)
ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAg < 1:2017955/100‑1 (MQ=255)
tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGc > 1:2944772/1‑100 (MQ=255)
gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTATGTCGAGTCGAACCTCCCTGACCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGcc < 1:504504/100‑1 (MQ=255)
gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGcc < 1:1014371/100‑1 (MQ=255)
gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGcc > 1:510072/1‑100 (MQ=255)
gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGcc < 2:1781803/100‑1 (MQ=255)
gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGcc < 2:2494259/100‑1 (MQ=255)
tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAACTGCAGAAGCAAAAAAGCCTGCt > 1:1457150/1‑98 (MQ=255)
gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCt < 2:298815/97‑1 (MQ=255)
cGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCCAAAAAGCCTGCTcaac > 2:2428065/1‑97 (MQ=255)
gACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTg > 1:1830918/1‑100 (MQ=255)
gACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTg < 2:485239/100‑1 (MQ=255)
gACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTg > 2:1096515/1‑100 (MQ=255)
gACGCTGACGCGTCTTATCAGGCATACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTg < 2:1960263/100‑1 (MQ=255)
aCGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGa < 2:2944740/100‑1 (MQ=255)
aCGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGa < 1:2561699/100‑1 (MQ=255)
aCGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGATACAGAAGAAAAAAAGCCTGCTCGTTGa < 2:2935364/100‑1 (MQ=18)
cGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGCGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAg > 2:2782269/1‑100 (MQ=255)
cGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAg < 2:2382954/100‑1 (MQ=255)
cGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGATCATTGa > 1:659200/1‑99 (MQ=255)
gCTGTCTCGTCTTATCAGGCGTACGTTGATTCGAATTTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGc < 1:1878344/100‑1 (MQ=17)
gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAg < 1:2245874/99‑1 (MQ=255)
taaCGCGTCTTATCAGGACTACGTCGAGTCGAACCTCCCTGCCCCCAGATTTTCTCACCCTCATGTGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAg < 2:2382999/95‑1 (MQ=17)
tGACGCGTCTTATCAGGCTTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAg < 1:2742689/100‑1 (MQ=255)
tGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAg < 1:2685646/100‑1 (MQ=255)
tGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAg < 1:822916/100‑1 (MQ=255)
gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTcaacgagcagg < 2:3027882/100‑11 (MQ=17)
gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAgg > 1:2175637/1‑100 (MQ=255)
cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCt > 1:793754/1‑100 (MQ=255)
gcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCt > 2:990688/1‑99 (MQ=255)
cgTTTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCttt < 1:2114710/100‑1 (MQ=255)
gTCTTATCAGGCTTACGTCGAGTCGAACCTCCCTGCCCCCGTGGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCAACGAGCAGGCttt < 2:1227938/99‑1 (MQ=14)
gTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAACAACAGAAGAAAAAAAGCCTGAACGTTGAACa > 1:936697/1‑93 (MQ=17)
tCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCAACGAGCAGGCttttt < 2:2237100/100‑2 (MQ=17)
cTTATCAGGCCTACGTCGGGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCAGGGGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCtttgc < 2:2123129/99‑3 (MQ=17)
cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCatt > 1:2207293/1‑97 (MQ=255)
cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCg > 2:1286999/1‑100 (MQ=255)
tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGaa < 2:793750/100‑1 (MQ=255)
tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCACGTTGAGCAGGCTTTTCGaa > 1:1238889/1‑100 (MQ=255)
aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAAt < 1:6622/100‑1 (MQ=255)
aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAAt > 1:2563987/1‑100 (MQ=255)
aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAAt > 2:1461034/1‑100 (MQ=255)
tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTAGTGACCTGCAGAAGAAAAAAAGCCTGCTCGTTAAGCCGGCGTGTCg > 2:113431/1‑96 (MQ=14)
tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGACGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTATCGAAtt > 2:1622065/1‑100 (MQ=255)
cAGGCCTACGTCTAGTCGAACCTACCTGCCCCCGGAAGGTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTGGTTGAGCAGGCTTTTCGAAtt > 2:1747832/1‑99 (MQ=14)
ggCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 2:1514109/1‑100 (MQ=255)
ggCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTg > 2:1422830/1‑99 (MQ=255)
ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGTCTGATCGTTGAGGAGGCGTTTCGAATTTggct > 2:903918/1‑98 (MQ=11)
tACGTCGAGTCGAACCTCCCTGCCCCCGGAGTTTCTCATACTCATGAGCTACAGAAGAAAAAAAACCTGCTCGTTGAGCAGGATTTTCGAATTTGGTCg > 1:39188/1‑99 (MQ=11)
cGTCGAGTCGAACCTCCCTAACCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGAAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg > 2:1857750/1‑100 (MQ=11)
gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGa < 1:1517192/100‑1 (MQ=11)
cccTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCg > 2:321906/1‑100 (MQ=25)
cccTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCg < 2:912593/100‑1 (MQ=25)
ccTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGc < 2:940826/100‑1 (MQ=35)
ccTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGc > 2:3044790/1‑100 (MQ=25)
gatctcccGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc < 1:2285177/95‑1 (MQ=255)
cTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc < 1:2672719/100‑1 (MQ=255)
cccccGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:844191/1‑100 (MQ=255)
ccccGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:1640603/1‑99 (MQ=255)
cccGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCagatc > 2:2285151/1‑96 (MQ=255)
cccGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTc > 2:2214497/1‑100 (MQ=255)
cccGGAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTc > 1:245428/1‑100 (MQ=255)
ccGGATGTTCTTATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCg < 1:1915033/100‑1 (MQ=255)
ggAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg < 1:2955527/100‑1 (MQ=255)
ggAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg < 2:2175614/100‑1 (MQ=255)
gAGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg < 2:1626860/100‑1 (MQ=255)
aGGTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGc < 2:241273/100‑1 (MQ=255)
ggTTCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCt > 2:2706545/1‑100 (MQ=255)
ttCTCATCCTCATGAGCTGCAGAAGTAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCg < 1:1500286/100‑1 (MQ=255)
ttCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCg < 1:1674424/100‑1 (MQ=255)
ttCTCATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCg < 1:1514126/100‑1 (MQ=255)
tctcATCCTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc < 1:2154025/100‑1 (MQ=255)
cTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCgg > 2:868723/1‑100 (MQ=255)
cTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCgg > 1:1457771/1‑100 (MQ=255)
cTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCgg > 1:974014/1‑100 (MQ=255)
cTCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTAGCCACTTCGAGGCTCGCACTgag > 1:96904/1‑97 (MQ=17)
taaTGAGCTGCAGAAGCAAAAAATTCTTCTTTTTGTGTAGGCTTTTGGAATTTGGTCGGTTATAGAGTTTTACTCGCCATTTCGTGGCTCGCCCTGCgg < 2:678907/97‑1 (MQ=255)
tCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGGTAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCggg < 2:1864501/100‑1 (MQ=255)
tCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCggg > 2:2413911/1‑100 (MQ=255)
tCATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCg > 1:1219309/1‑98 (MQ=255)
cATGAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCCTGGCTCTCCCTGccg > 2:1150985/1‑96 (MQ=17)
gAGCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCTACTACGCGGCTGGCCCATCGGGc > 2:767593/1‑97 (MQ=14)
gCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGTCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTg < 1:819351/100‑1 (MQ=255)
gCTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTg > 1:2947723/1‑100 (MQ=255)
cTGCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGc < 2:1671564/100‑1 (MQ=255)
ttcAGATGCAAAAAAGCTTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGc < 1:672053/97‑1 (MQ=255)
gCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:1829331/1‑100 (MQ=255)
gCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:1925728/1‑100 (MQ=255)
gCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:2736732/1‑100 (MQ=255)
gCAGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACGTCCTGGCTGGCCCTGCGGGACGATGCt > 2:2880015/1‑99 (MQ=17)
gCAGAAGAAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAAAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTg > 1:1587617/1‑100 (MQ=255)
aGAAGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGgc > 1:2871019/1‑100 (MQ=255)
|
GGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC > NC_000913/3708313‑3708506
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
