Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F212 I0 R1
|
246 |
122.0 |
6097616 |
93.1% |
5676880 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,168,540 |
T→A |
100% |
intergenic (+93/‑101) |
gltT → / → rrlB |
tRNA‑Glu/23S ribosomal RNA of rrnB operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,168,540 | 0 | T | A | 99.2%
| 311.1
/ ‑4.2
| 124 | intergenic (+93/‑101) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base A (65/58); total (66/58) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 |
Only 100 of 124 total aligned reads displayed.
CCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTT > NC_000913/4168445‑4168636
|
ccACTTGCTGGTTTGTGAGTGAAAGTCGTCGACCTTAATATCTCAAGTTTCATCTTTGGGTGATGTTTGAGATATTTATTATATAAAAATCTGGAACAAg < 2:664646/100‑1 (MQ=14)
ccACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGAAACAAg > 1:2860579/1‑100 (MQ=255)
cACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGc < 1:998053/100‑1 (MQ=255)
cACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGc < 1:2825156/100‑1 (MQ=255)
cTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTAGGGTGATGTTTGAGATATTTGATCTTTAAAAATCTGGAACAAGCTGaaaa > 1:1694890/1‑100 (MQ=255)
ggTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAAt > 2:3014752/1‑99 (MQ=255)
ggTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATATGGAACAAGCTGAAAAtt > 1:525547/1‑100 (MQ=255)
ggTTTGTCAGTGAAAGTCGCAGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAATTTTGCTCTTTAAAAATTTGGAACAAGCTGAAAAtt > 2:673791/1‑100 (MQ=14)
tttGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGa < 1:402387/100‑1 (MQ=255)
ttGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGaa < 2:933075/100‑1 (MQ=255)
ttGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGaa < 2:2243542/100‑1 (MQ=255)
tgtgAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATTTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGaaa < 1:2757391/100‑1 (MQ=255)
tgtgAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGaaa < 2:2361122/100‑1 (MQ=255)
tgcgtgaGAGTGGCCTACGTTGGTATTTCAAAACTCATCTTCGTGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAATCTGAAAATTGAAac < 2:2873526/96‑1 (MQ=11)
tgagtgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAaca > 2:188742/1‑100 (MQ=255)
tgagtgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAaca > 2:2885396/1‑100 (MQ=255)
gtgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTg < 2:852515/100‑1 (MQ=255)
gtgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTg > 1:2943349/1‑100 (MQ=255)
tgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGa < 1:1847822/100‑1 (MQ=255)
tgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGa > 2:1867279/1‑100 (MQ=255)
tgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGa < 1:1116729/100‑1 (MQ=255)
tgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGa < 1:1847726/100‑1 (MQ=255)
gaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGaa < 1:1410584/100‑1 (MQ=255)
aaaGTCGCCTACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGaac < 1:1481781/100‑1 (MQ=12)
aaaGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGaac < 2:503465/100‑1 (MQ=255)
aaaGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGaac > 1:730426/1‑100 (MQ=255)
aaaGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGaac < 1:1555724/100‑1 (MQ=255)
tCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACg > 2:2299564/1‑100 (MQ=255)
cGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACga > 1:2549223/1‑100 (MQ=25)
cGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACga > 1:812842/1‑100 (MQ=25)
cGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACga > 2:1748168/1‑100 (MQ=25)
ccGACCTTAATATCTCAAAACTTATCTTCGGCTGATGCTTGAGATATGTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACgaga < 2:2048128/100‑1 (MQ=11)
cGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATGTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACg < 2:2528256/96‑1 (MQ=12)
ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAgttg > 1:1831832/1‑100 (MQ=18)
ccTTAATATCTCAAAACTCATATTCGGATGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGagag > 2:1486656/1‑97 (MQ=255)
ttAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAgttgtt > 1:2584925/1‑100 (MQ=18)
aaTATCTCAAAACTCATCTTCGGGTTATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCg < 2:2653995/100‑1 (MQ=12)
aaTATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCg < 2:8275/100‑1 (MQ=18)
tatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTTCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTg < 2:133753/100‑1 (MQ=255)
tatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTg < 1:2010379/100‑1 (MQ=17)
atCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAACTCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGa > 2:2807681/1‑100 (MQ=12)
atCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGa > 2:2664881/1‑100 (MQ=17)
tctcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAg < 1:2973266/100‑1 (MQ=18)
tctcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAg < 1:2236407/100‑1 (MQ=18)
tctcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAg < 1:2236054/100‑1 (MQ=18)
ctcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGt > 1:1780792/1‑100 (MQ=17)
ctcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGt > 1:2347177/1‑100 (MQ=18)
tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAGTCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAgac > 2:919672/1‑98 (MQ=255)
tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGtc < 2:160594/100‑1 (MQ=18)
tcAAAACTCATCTTCGGGTGATGGATGAGATATTTGCTCTTAAAAAATCTGTAACAAGCTGAAAATTGAAAAACTGAACAATGAGAGTTGTTCGTGAg > 2:1070340/1‑98 (MQ=11)
cAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGtct > 2:2146510/1‑100 (MQ=18)
aaaaTCATCTTCGGGTGATGTTTGTGATATTTGCTTTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGtctct < 1:218600/100‑1 (MQ=11)
aCTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCa > 2:2640420/1‑100 (MQ=17)
tctaTCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCaa < 1:1918017/97‑1 (MQ=16)
cTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCaa < 2:1942814/100‑1 (MQ=17)
cTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCaa < 2:685863/100‑1 (MQ=18)
tCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAACATTGAAACCCTGAACAACGAGAGTTGTTCGTGAGTCTCTCaa < 1:1505732/99‑1 (MQ=255)
tCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCaaa < 2:1949306/100‑1 (MQ=18)
cATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAAt < 2:1225307/100‑1 (MQ=17)
aTCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCaaaga > 2:1917994/1‑98 (MQ=16)
aTCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAAtt < 1:1954854/100‑1 (MQ=18)
ttCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGCAACTTGAAACACTGAACAACCAGAGTTGTTCGTGAGTCTCTCAAATTTTc < 2:1805645/100‑1 (MQ=11)
ttCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTc < 1:1953522/100‑1 (MQ=18)
tccgatcttGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCg < 1:2425641/92‑1 (MQ=11)
cGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAATCTGAAAATTGAAACACTGTACAACGAGAGTTGTTCTTGAGTCTCTCAAATTTgcgc < 2:1400258/100‑1 (MQ=11)
cGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGc < 1:1224615/100‑1 (MQ=17)
ggTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCaa < 2:426681/100‑1 (MQ=18)
tGTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCgagatcgga > 2:2425612/1‑92 (MQ=11)
gTTTGAGATATTTGCTCTTTAAAAATCTGGAACGAGCTGAAAATTGAAACACTGAACAACGAGATTTGTTCGTGAGTCTCTCAAATTTTTGCAACACgat > 2:1999575/1‑100 (MQ=11)
gTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat > 2:1048791/1‑100 (MQ=18)
gTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat > 1:1382604/1‑100 (MQ=17)
gTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat > 1:468074/1‑100 (MQ=17)
gTTTGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat > 2:2033046/1‑100 (MQ=17)
ttGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTAGTGAGTCTCTCAAATTTTCGCAACACgatga > 2:2725357/1‑100 (MQ=12)
ttGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAAAAACGAGAATTGTTAGTGAGTATATCAAATTTTCGCAACACgatga > 1:954563/1‑100 (MQ=11)
tGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 2:2829544/1‑100 (MQ=18)
tGAGATATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 1:1225489/1‑100 (MQ=17)
agaTATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTTTCTCAAATTTTAGTAACACgataatta > 1:596956/1‑98 (MQ=11)
agaTATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgatn < 2:2620152/99‑2 (MQ=18)
gaTATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa > 2:122677/1‑100 (MQ=17)
gaTATTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa > 2:1184202/1‑100 (MQ=18)
atTTGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg > 2:1416221/1‑100 (MQ=17)
tttGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCga > 2:171343/1‑100 (MQ=18)
tttGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCga > 2:1155431/1‑100 (MQ=17)
tGCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaa < 1:869666/100‑1 (MQ=17)
gCTCTTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaag < 2:1953771/100‑1 (MQ=18)
ctctTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaaga > 2:2291579/1‑100 (MQ=18)
tctTTTAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGCCTCTCAAATTGTCGAAACACGATGATGAATCgaaaga > 2:2518327/1‑99 (MQ=11)
tctTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaa > 2:299989/1‑100 (MQ=17)
ntttAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaa > 2:1561575/2‑99 (MQ=17)
ctTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa > 2:2519723/1‑100 (MQ=17)
ctTTAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa > 2:1883132/1‑100 (MQ=18)
tAAAAATCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACAt > 2:1206869/1‑100 (MQ=18)
aaaaaTCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACaac > 2:1842047/1‑98 (MQ=16)
aaaaTCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCt > 2:1159143/1‑100 (MQ=18)
aTCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCg > 2:557601/1‑100 (MQ=17)
tCTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCgg < 2:2347150/100‑1 (MQ=18)
cTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCggg < 1:999751/100‑1 (MQ=17)
cTGGAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCggg < 2:1279255/100‑1 (MQ=17)
ggAACAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGtt > 1:2359038/1‑100 (MQ=18)
|
CCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTT > NC_000913/4168445‑4168636
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
